BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55010.1
Length=243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914880 jgi|Araly1|914880|Al_scaffold_0001_5134 377 2e-104
> Ahg914880 jgi|Araly1|914880|Al_scaffold_0001_5134
Length=243
Score = 377 bits (204), Expect = 2e-104
Identities = 230/243 (95%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 1 ATGGCTAAGTTTTGTACCACCATTACCCTTATTTTGGTTGCTCTTGTTCTCTTTGCTGAT 60
||||||||||||| | ||| ||| |||||||| || | ||||||||||||||||||||||
Sbjct 1 ATGGCTAAGTTTTCTTCCATCATCACCCTTATCTTCGCTGCTCTTGTTCTCTTTGCTGAT 60
Query 61 TTTGAAGCACCGACAATTGTGAAAGCAGAGCTTTGCAAAAGGGAAAGTGAGACATGGTCA 120
|| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TTAGAAGCACCGGTAATTGTGAAAGCAGAGCTTTGCAAAAGGGAAAGTGAGACATGGTCA 120
Query 121 GGACGTTGTGTAAACGATTATCAGTGCAGAGATCATTGCATTAACAATGATAGAGGAAAT 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 GGACGTTGTGTAAACGATTATCAGTGCAGGGATCATTGCATTAACAATGATAGAGGAAAT 180
Query 181 GATGGATATTGCGCTGGTGGCTACCCATGGTACAGATCATGTTTCTGTTTCTTCTCTTGC 240
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 GATGGATATTGCGCTGGTGGCTACCCATGGTACAGAGGATGTTTCTGTTTCTTCTCTTGC 240
Query 241 TAA 243
|||
Sbjct 241 TAA 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8401417420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5