BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55020.1
Length=2800
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474776 jgi|Araly1|474776|fgenesh2_kg.1__4730__AT1G55020.1 4167 0.0
> Ahg474776 jgi|Araly1|474776|fgenesh2_kg.1__4730__AT1G55020.1
Length=2687
Score = 4167 bits (2256), Expect = 0.0
Identities = 2553/2698 (95%), Gaps = 13/2698 (0%)
Strand=Plus/Plus
Query 91 ATGTTCGGAGAACTTAG-GGATCTGCTCACCGGCGGCGGAAATGAGACGACGACGAAGAA 149
||| ||||||||||| | |||||||||||||||||| |||||| || |||||||||
Sbjct 1 ATGATCGGAGAACTT-GTGGATCTGCTCACCGGCGGTGGAAAT-----GA-GACGAAGAA 53
Query 150 GGTGAAAGGAACGGTGGTTCTGATGAAGAAGAACGTCCTCGATTTCAACGATTTCAATGC 209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 54 GGTGAAAGGAACGGTGGTTCTGATGAAGAAGAACGTCCTCGATTTCAACGATTTCAACGC 113
Query 210 TTCGTTTCTCGATCGTCTTCATGAATTTCTCGGAAACAAAATCACTCTTCGTCTTGTAAG 269
|||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||
Sbjct 114 TTCGTTTCTCGATCGTCTTCATGAATTTCTTGGAAACAAAATCACTCTTCGTCTCATTAG 173
Query 270 CTCTGATGTTACTGATTCAGAAAACGGTTCTAAAGGCAAACTAGGGAAGGCTGCTCACTT 329
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 174 CTCTGATGTTACTGATTCTGAAAACGGTTCTAAAGGCAAACTAGGGAAGGCTGCTCACTT 233
Query 330 GGAGGATTGGATCACAACAATCACGTCGTTAACCGCAGGCGAATCCGCTTTCAAGGTCAC 389
||||||||||||||| |||||||| |||||||||||||||||||| || |||||||||||
Sbjct 234 GGAGGATTGGATCACCACAATCACATCGTTAACCGCAGGCGAATCGGCCTTCAAGGTCAC 293
Query 390 GTTCGATTACGAAACCGATTTCGGTTACCCTGGAGCATTCTTGATCAGAAACAGCCATTT 449
|||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 294 GTTCGATTACGACAGCGATTTCGGTTACCCTGGAGCATTCTTGATCAAAAACAGCCATTT 353
Query 450 CAGTGAGTTTCTTCTCAAAAGTCTCACACTTGAAGACGTTCCAGGCCATGGCAGAGTCCA 509
||| |||||| |||||| |||||| ||||||||||| || ||||||||||||||||||||
Sbjct 354 CAGCGAGTTTTTTCTCAGAAGTCTTACACTTGAAGATGTCCCAGGCCATGGCAGAGTCCA 413
Query 510 TTACATCTGTAATTCTTGGATTTACCCTGCTAAACACTACACTACAGACCGAGTCTTCTT 569
||||||||| |||||||||||||||||||||||||||||||| | ||||||||| |||||
Sbjct 414 TTACATCTGCAATTCTTGGATTTACCCTGCTAAACACTACACCAAAGACCGAGTTTTCTT 473
Query 570 CTCCAACAAGACTTATCTTCCACATGAAACACCAGCGACGCTGCTCAAGTATAGAGAAGA 629
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 474 CTCCAACAAGACTTATCTTCCACATGAAACACCAGCGACGCTACTCAAGTATAGAGAAGA 533
Query 630 AGAGCTAGTGAGTTTGAGAGGAACCGGCGAAGGAGAGCTTAAGGAATGGGACAGAGTATA 689
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 534 AGAGCTAGTGAGTTTGAGAGGAACCGGCGAAGGAGAGCTCAAGGAATGGGACAGAGTATA 593
Query 690 TGACTATGCTTACTACAATGATTTAGGCGTCCCACCAAAGAACCCACGGCCTGTACTTGG 749
||| ||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||
Sbjct 594 TGATTATGCTTACTACAATGATTTAGGCGCCCCACCAAAAAACCCACGACCTGTACTTGG 653
Query 750 AGGGACACAGGAGTATCCTTACCCAAGAAGAGGAAGAACCGGGCGGAAACCAACTAAAGA 809
||||||||| |||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 654 AGGGACACAAGAGTATCCTTACCCAAGAAGGGGAAGAACCGGGCGGAAACCGACGAAAGA 713
Query 810 AGATCCTCAAACCGAGAGCAGGCTACCGATCACATCGAGCCTAGACATATATGTTCCACG 869
|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 714 AGATCCTCAAACCGAGAGCAGGTTACCGATCACATCGAGCCTAGATATATATGTTCCACG 773
Query 870 AGATGAGAGATTTGGACACTTGAAGATGTCTGATTTCCTTGCTTATGCTCTAAAAGCGAT 929
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 774 AGATGAGAGATTTGGACACTTGAAGATGTCTGATTTCCTTGCTTATGCTCTGAAAGCAAT 833
Query 930 TGCTCAGTTCATCCAACCTGCACTTGAGGCTGTATTCGACGATACTCCTAAAGAGTTTGA 989
||||||||| ||||| ||||| |||||||| || |||||||| |||||||||||||||||
Sbjct 834 TGCTCAGTTTATCCAGCCTGCGCTTGAGGCCGTCTTCGACGACACTCCTAAAGAGTTTGA 893
Query 990 TTCTTTTGAAGATGTTCTTAAGATCTATGAAGAAGGAATCGATCTACCAAACCAAGCTTT 1049
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 TTCTTTTGAAGATGTTCTTAAGATCTATGAAGAAGGAATCGATCTACCAAACCAAGCTTT 953
Query 1050 GATTGATAGTATCGTTAAGAATATACCGCTTGAGATGTTAAAGGAGATATTCAGAACAGA 1109
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 954 GATTGATAGTATCGTTAAGAATATACCGCTTGAGATGTTAAAAGAGATATTCAGAACAGA 1013
Query 1110 TGGCCAGAAATTCCTTAAGTTTCCAGTGCCTCAGGTCATCAAAGAGGACAAAACTGCATG 1169
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 CGGCCAGAAATTCCTTAAGTTTCCAGTGCCTCAGGTCATCAAAGAGGACAAAACTGCATG 1073
Query 1170 GAGAACAGATGAGGAATTTGCTAGAGAAATGTTGGCTGGACTAAACCCTGTTGTTATTCA 1229
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1074 GAGAACTGATGAGGAATTTGCTAGAGAAATGTTGGCTGGACTTAACCCTGTTGTTATTCA 1133
Query 1230 ACTTCTTAAGGAGTTTCCTCCAAAGAGTAAGCTTGACAGTGAATCATACGGTAACCAGAA 1289
||||||| ||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1134 ACTTCTTCAGGAGTTTCCTCCAAAGAGCAAGCTTGACAGCAAATCATACGGTAACCAGAA 1193
Query 1290 CAGTACAATCACTAAAAGCCACATAGAACACAATTTGGATGGACTCACTGTTGAAGAGGC 1349
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 1194 CAGTACAATCACTAAAAGCCACATAGAACACAACTTAGATGGACTCACTGTTGAAGAGGC 1253
Query 1350 TCTGGAGAAGGAGAGGTTGTTTATATTAGACCACCATGACACACTGATGCCATACTTGGG 1409
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1254 TCTGGAGAAGGAGAGGTTGTTCATATTAGACCACCATGACACACTGATGCCATACTTGGG 1313
Query 1410 ACGCGTAAACACCACCACGACCAAGACTTATGCAAGCAGGACACTTCTGTTCTTGAAAGA 1469
||| ||||||| ||| ||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1314 ACGTATAAACACTACCCCGACCAAGACTTATGCAAGTAGGACACTTCTGTTCCTGAAAGA 1373
Query 1470 TGATGGGACCTTGAAGCCGTTGGTGATAGAGCTGAGCTTGCCTCATCCTAATGGAGACAA 1529
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TGATGGGACCTTGAAGCCATTGGTGATAGAGCTGAGCTTGCCTCATCCTAATGGAGACAA 1433
Query 1530 ATTTGGAGCAGTGAGTGAAGTATATACGCCTGGTGAAGGTGTCTACGACTCGCTATGGCA 1589
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1434 ATTTGGAGCAGTGAGTGAAGTATATACGCCTGGTGAAGGCGTCTACGACTCGCTATGGCA 1493
Query 1590 GTTGGCTAAGGCTTTTGTCGGTGTAAATGACTCCGGAAATCATCAGCTTATTAGCCACTG 1649
|||||| ||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct 1494 GTTGGCAAAGGCTTTTGTGGGTGTAAATGACTCTGGAAATCATCAGCTTATTAGCCACTG 1553
Query 1650 GATGCAAACACACGCATCGATTGAACCGTTTGTGATTGCCACAAACAGACAGCTGAGTGT 1709
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 1554 GATGCAAACACACGCATCGATTGAACCTTTTGTGATTGCCACGAACAGACAGCTGAGTGT 1613
Query 1710 TCTTCACCCGGTCTTTAAGCTCCTTGAACCTCACTTCCGTGATACGATGAATATCAATGC 1769
||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1614 TCTCCACCCGGTCTTTAAGCTCCTTGAACCTCATTTCCGTGATACGATGAATATCAATGC 1673
Query 1770 ACTTGCTAGGCAAATCTTGATCAATGGTGGTGGTATATTTGAAATCACTGTGTTTCCTTC 1829
||||||||||||||| | ||||||||||||||||| ||||| | ||||||||| |||||
Sbjct 1674 GCTTGCTAGGCAAATCCTCATCAATGGTGGTGGTATCTTTGAGACCACTGTGTTCCCTTC 1733
Query 1830 TAAATACGCCATGGAGATGTCATCTTTCATTTACAAAAACCACTGGACCTTCCCTGACCA 1889
|||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 1734 TAAATATGCCATGGAGATGTCATCTTTCATCTACAAGAACCACTGGACCTTCCCTGACCA 1793
Query 1890 AGCATTACCAGCAGAACTTAAAAAGAGAGGGATGGCCGTTGAGGATCCAGAAGCACCACA 1949
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 AGCGTTGCCAGCAGAACTTAAAAAGAGAGGGATGGCCGTTGAGGATCCAGAAGCACCACA 1853
Query 1950 CGGATTACGTCTGAGGATAAAAGACTATCCTTACGCAGTGGATGGGCTTGAGGTTTGGTA 2009
||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 1854 TGGATTACGTCTGAGGATAAAAGACTATCCTTTCGCTGTGGATGGACTTGAGGTTTGGTA 1913
Query 2010 TGCTATTGAATCATGGGTCCGAGACTACATTTTCTTGTTCTACAAGATAGAGGAGGATAT 2069
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1914 TGCTATTGAATCATGGGTCCGAGACTACATTTCCTTGTACTACAAGACAGAGGAGGATAT 1973
Query 2070 CCAAACCGACACAGAGCTCCAAGCCTGGTGGAAGGAGGTGCGCGAGGAAGGTCATGGAGA 2129
||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1974 CCAAAGCGACACCGAGCTCCAAGCCTGGTGGAAGGAGGTGCGCGAGGAAGGTCACGGAGA 2033
Query 2130 CAAAAAGTCAGAACCATGGTGGCCTAAAATGCAAACCCGTGAAGAACTTGTTGAGTCTTG 2189
||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2034 CAAAAAGTCAGAACCTTGGTGGCCTAAAATGCAAACCCGTGAAGAACTTGTGGAGTCTTG 2093
Query 2190 CACCATCATTATTTGGGTGGCTTCTGCTCTTCATGCAGCTGTTAACTTCGGACAGTATCC 2249
|||||| |||||||||||||||||||||||||| || || |||||||||||||| |||||
Sbjct 2094 CACCATAATTATTTGGGTGGCTTCTGCTCTTCACGCGGCCGTTAACTTCGGACAATATCC 2153
Query 2250 AGTTGCTGGGTACCTCCCAAACAGACCGACTATAAGCCGTCAGTACATGCCAAAGGAAAA 2309
|||||| ||||||||||| |||||||| || || ||||||||||||||||||||||||||
Sbjct 2154 AGTTGCCGGGTACCTCCCGAACAGACCAACCATTAGCCGTCAGTACATGCCAAAGGAAAA 2213
Query 2310 CACTCCAGAGTTTGAAGAACTTGAGAAGAATCCTGATAAAGTGTTTTTGAAGACCATCAC 2369
||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||
Sbjct 2214 CACTCCAGAGTTTGAAGAACTTGAGAAGAATCCGGACAAAGTGTTTTTGAAGACAATCAC 2273
Query 2370 AGCTCAGCTTCAGACACTTCTAGGGATATCTCTGATTGAGATTCTCTCTACTCATTCTAG 2429
|||||||||||| || |||||||| |||||||||||||||||||||||||| ||||| ||
Sbjct 2274 AGCTCAGCTTCAAACGCTTCTAGGTATATCTCTGATTGAGATTCTCTCTACACATTCGAG 2333
Query 2430 CGACGAGGTCTATTTGGGACAGAGAGATTCTAAAGAATGGGCGGCTGAGAAAGAAGCGTT 2489
||| || || ||||||||||||||||||||||| ||||||||||| |||||||| |||||
Sbjct 2334 CGATGAAGTGTATTTGGGACAGAGAGATTCTAAGGAATGGGCGGCCGAGAAAGAGGCGTT 2393
Query 2490 GGAGGCGTTCGAGAAGTTTGGAGAGAAAGTAAAGGAGATTGAGAAGAACATTGATGAGAG 2549
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2394 GGAGGCGTTCGCGAAGTTTGGAGAGAAAGTAAAGGAGATTGAGAAGAACATTGATGAGAG 2453
Query 2550 GAACGACGACGAGACTCTCAAGAACAGGACTGGTTTGGTTAAGATGCCATACACTTTATT 2609
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2454 GAACGACGACGAGACTCTCAAGAACAGGACTGGTTTGGTTAAGATGCCGTACACTTTATT 2513
Query 2610 GTTTCCGAGCAGTGAAGGCGGAGTCACCGGCAGGGGAATTCCAAATAGCGTCTCTATCTG 2669
|||||||| ||||||||| |||||||||||||||||||||||||| || ||||| ||||
Sbjct 2514 GTTTCCGACCAGTGAAGGTGGAGTCACCGGCAGGGGAATTCCAAACAGTGTCTCCATCTA 2573
Query 2670 AAACAACTCTCGCTTCAGAATTGTGTCAGAGTCACGTGT-TGTTCTATATCCCATGGTTT 2728
|||||| |||| |||||| |||||||| | ||| || | ||||||||||||||||||||
Sbjct 2574 AAACAAGTCTCACTTCAGGATTGTGTC-G--TCA-GTTTGTGTTCTATATCCCATGGTTT 2629
Query 2729 ACTTGTTCTACAAGTTATAAACTTTGATTATTGTTATAATAAACATCAGAATAAAGCA 2786
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2630 ACTTGTTCTACAAGTTATAAACTTTGATTCTTGTTATAATAAACATCAGAATAAAGCA 2687
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105662339630
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5