BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55030.1
Length=1269
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474777 jgi|Araly1|474777|fgenesh2_kg.1__4731__AT1G55030.1 1744 0.0
> Ahg474777 jgi|Araly1|474777|fgenesh2_kg.1__4731__AT1G55030.1
Length=1274
Score = 1744 bits (944), Expect = 0.0
Identities = 1168/1277 (91%), Gaps = 12/1277 (1%)
Strand=Plus/Plus
Query 1 ATGAACAATCGAGGTGCTGTTACGGACATGATTAGTCAGTTACCTGAACCTTTGATTCTC 60
|||||||||||| ||| |||||| || | |||||||||||| |||||| ||||||||||
Sbjct 1 ATGAACAATCGAAGTGTTGTTACTGATAAGATTAGTCAGTTGCCTGAAGCTTTGATTCTA 60
Query 61 CAGATATTGGGCTCACTTCCTACGAAAGTTGCCATAACCACGAGTGTTTTGTCTAAACAA 120
|||||||| ||| ||||||||| ||||||||||||||||||||||||||||| ||| ||
Sbjct 61 CAGATATTATGCTTACTTCCTACAAAAGTTGCCATAACCACGAGTGTTTTGTCCAAAAAA 120
Query 121 TGGCAGTCTCATTGGAAAATGATGCCCAAACTCGAGTTTGATTCTTTCCTTCGCAGACTT 180
|||||||||||||||||||||||||| |||||| ||||||||||||||||||| ||||||
Sbjct 121 TGGCAGTCTCATTGGAAAATGATGCCTAAACTCAAGTTTGATTCTTTCCTTCGTAGACTT 180
Query 181 GACCTGGAGAATGTTACCAAGTGTTTGCTTTCACATAAGGCTCCGGTTCTACAAACTTTT 240
||||| ||||||||| ||||| |||||||||||||||||||||||||||||| | ||||
Sbjct 181 GACCTAGAGAATGTTTGCAAGTCTTTGCTTTCACATAAGGCTCCGGTTCTACAGAGTTTT 240
Query 241 AGTCTCAAAGTTCGTTTAGATAGACGTAATAATGCAGTGGATATTGG-TTGCTTGATTGG 299
|||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||
Sbjct 241 GGTCTCAAAGTTCGTTTAGATGGACGTAATAATGCAGTGGATATTGGAAT-CTTGATTGG 299
Query 300 AATTGCAATGACTCGCAATGTGCGTAAATTGGTACTCGAAGTTTACTTTCACAGAGGGAC 359
||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| |
Sbjct 300 AATTGCAATGACTCGCAATTTGCGTAAGTTGGTACTAGAAGTTTACTTTCACAGAGGGTC 359
Query 360 ATTCACATTTCCTAGGAGCTTGTACCACTGTGAAACACTAGAGACTTTGGAACTCATCCT 419
||| |||||||||| |||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 360 ATTTGCATTTCCTAGAAGCTTGTATAACTGTGAAACACTAGAGACTTTGAAACTCATCCT 419
Query 420 TAATGTTGTTATGGATGTCCCTCCTTCGGTTTATCTGAAATCCCTTAAAACCCTTTATCT 479
|||||||||||||||||||||| ||||||||| |||||||||||||| ||| || ||||
Sbjct 420 TAATGTTGTTATGGATGTCCCTTCTTCGGTTTCTCTGAAATCCCTTAGAACTCTGCATCT 479
Query 480 TCTAGCTGTGGACTTCAAAGACGATGAATCAGTTATTAACCTTTTATCTGGCTGTCCTAA 539
|||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 480 TCTAGCTGTGGACTTCAAAGACGATGAATCCGTTATTAACCTTATATCTGGCTGTCCTAA 539
Query 540 TCTTCAAGATTTGGTAATGCGTAGAAATTCAAGTAGTAATGTGAAAACTTTCACTATTGC 599
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 540 TCTTGAAGATTTGGTAATGCGTAGAAATTCAAGTAGTAGTGTGAAAACTTTCACTATTGT 599
Query 600 AGTGCCATCTTTACA-AAGACTAGCCATTCATAATGGCAGTGGTACACCACAACATTGTG 658
||||||||||||||| || |||||| ||||||||||||||||||| || ||||||||| |
Sbjct 600 AGTGCCATCTTTACAGAA-ACTAGCAATTCATAATGGCAGTGGTAGACAACAACATTGGG 658
Query 659 GATATACCATAAATACTCCTTCTTTGAAATACTTGAAACTTGAAGGGTCTAAGGCTTTTG 718
| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 659 GCTATGTGATAAATACTCCTTCTTTGAAATACTTGAAGCTTGAAGGGTCTAAGGCTTTTG 718
Query 719 AGTCTTTTATGGTTGAGAACGTATCGGAGCTGATAGAGGTAAATATTACTGATGTCTCTG 778
||||||||||| ||||||||||| ||||||| || |||||| ||||||| ||||||||||
Sbjct 719 AGTCTTTTATGATTGAGAACGTACCGGAGCTTATGGAGGTACATATTACCGATGTCTCTG 778
Query 779 AGATAATCGACGAGAAGCTTCGGGTATTTCTTACTTCAGTTACACGTCTTTCCTTGGCTT 838
|||||||||||||||| |||| ||||||||| ||||| |||| |||||||||||||||||
Sbjct 779 AGATAATCGACGAGAAACTTCTGGTATTTCTCACTTCGGTTAAACGTCTTTCCTTGGCTT 838
Query 839 TATCA-CCATCGGTGTTTACGTTTCCTACCGGTATCATCTTCAACCAGTTAGTATATTTG 897
|| || ||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 839 TAACACCCA-CGGTGTTTACGTTTCCTACCGGTATCATCTTCAACCAGTTAGTATATTTG 897
Query 898 GAGATATGTACAAATAAAACATCATGGTGGAAACTACTTCCCCTCATGCTCCATAGTTCT 957
||| ||| ||||||||||| | |||||||||||||||||||||| ||||||||||||||
Sbjct 898 GAGGTATATACAAATAAAAAAGAATGGTGGAAACTACTTCCCCTCGTGCTCCATAGTTCT 957
Query 958 CCTAAACTCCAAGTCCTCAAGCTCATCGATGACACAGATGGGATGAACTATGTTGAGGCT 1017
|||||||| ||||||||||||||||||||||||| |||| ||||||||| ||||||||||
Sbjct 958 CCTAAACTGCAAGTCCTCAAGCTCATCGATGACATAGATTGGATGAACTTTGTTGAGGCT 1017
Query 1018 AGTGGAGAATGGAATCAACCAAAAAATGTTCCTGAATGTTTGCAC---CATCTTGAGAAA 1074
||||||||||||||||||||||| ||||| |||||||||||| |||||||||| |
Sbjct 1018 AGTGGAGAATGGAATCAACCAAAGAATGTACCTGAATGTTTGTTGTTTCATCTTGAGACA 1077
Query 1075 TTCATTTGGGAAGGCTACAAATGGAAACGTGAAGAG-A--TAGAAGTGGCGAAATACATT 1131
||||| ||||||||||||||||||||||| |||||| | ||||||||||||||||||||
Sbjct 1078 TTCATGTGGGAAGGCTACAAATGGAAACGAGAAGAGGAGGTAGAAGTGGCGAAATACATT 1137
Query 1132 CTAAAGAACACGAATCGTTTGAAGAGAGCTATTTTCTCCCTAAAAGGTATTAGTTCTGAA 1191
||||||||||||| |||||||||| |||||| |||||||||||| |||| |||||||||
Sbjct 1138 TTAAAGAACACGAACCGTTTGAAGAAAGCTATGTTCTCCCTAAAATGTATCAGTTCTGAA 1197
Query 1192 GATAGGCTTGTGGTGGTTGAAGATTTGAAAAGTGTTGTCATGGCTACAACAAATTCATGC 1251
|| |||||||| |||||| |||||||||||| |||||||| |||||||||||||||||||
Sbjct 1198 GAGAGGCTTGTAGTGGTTAAAGATTTGAAAAATGTTGTCAGGGCTACAACAAATTCATGC 1257
Query 1252 CAGTTTCAATTCATATG 1268
|||||||||||||||||
Sbjct 1258 CAGTTTCAATTCATATG 1274
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47424908748
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5