BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G55030.1 Length=1269 Score E Sequences producing significant alignments: (Bits) Value Ahg474777 jgi|Araly1|474777|fgenesh2_kg.1__4731__AT1G55030.1 1744 0.0 > Ahg474777 jgi|Araly1|474777|fgenesh2_kg.1__4731__AT1G55030.1 Length=1274 Score = 1744 bits (944), Expect = 0.0 Identities = 1168/1277 (91%), Gaps = 12/1277 (1%) Strand=Plus/Plus Query 1 ATGAACAATCGAGGTGCTGTTACGGACATGATTAGTCAGTTACCTGAACCTTTGATTCTC 60 |||||||||||| ||| |||||| || | |||||||||||| |||||| |||||||||| Sbjct 1 ATGAACAATCGAAGTGTTGTTACTGATAAGATTAGTCAGTTGCCTGAAGCTTTGATTCTA 60 Query 61 CAGATATTGGGCTCACTTCCTACGAAAGTTGCCATAACCACGAGTGTTTTGTCTAAACAA 120 |||||||| ||| ||||||||| ||||||||||||||||||||||||||||| ||| || Sbjct 61 CAGATATTATGCTTACTTCCTACAAAAGTTGCCATAACCACGAGTGTTTTGTCCAAAAAA 120 Query 121 TGGCAGTCTCATTGGAAAATGATGCCCAAACTCGAGTTTGATTCTTTCCTTCGCAGACTT 180 |||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||| Sbjct 121 TGGCAGTCTCATTGGAAAATGATGCCTAAACTCAAGTTTGATTCTTTCCTTCGTAGACTT 180 Query 181 GACCTGGAGAATGTTACCAAGTGTTTGCTTTCACATAAGGCTCCGGTTCTACAAACTTTT 240 ||||| ||||||||| ||||| |||||||||||||||||||||||||||||| | |||| Sbjct 181 GACCTAGAGAATGTTTGCAAGTCTTTGCTTTCACATAAGGCTCCGGTTCTACAGAGTTTT 240 Query 241 AGTCTCAAAGTTCGTTTAGATAGACGTAATAATGCAGTGGATATTGG-TTGCTTGATTGG 299 |||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||| Sbjct 241 GGTCTCAAAGTTCGTTTAGATGGACGTAATAATGCAGTGGATATTGGAAT-CTTGATTGG 299 Query 300 AATTGCAATGACTCGCAATGTGCGTAAATTGGTACTCGAAGTTTACTTTCACAGAGGGAC 359 ||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||| | Sbjct 300 AATTGCAATGACTCGCAATTTGCGTAAGTTGGTACTAGAAGTTTACTTTCACAGAGGGTC 359 Query 360 ATTCACATTTCCTAGGAGCTTGTACCACTGTGAAACACTAGAGACTTTGGAACTCATCCT 419 ||| |||||||||| |||||||| ||||||||||||||||||||||| |||||||||| Sbjct 360 ATTTGCATTTCCTAGAAGCTTGTATAACTGTGAAACACTAGAGACTTTGAAACTCATCCT 419 Query 420 TAATGTTGTTATGGATGTCCCTCCTTCGGTTTATCTGAAATCCCTTAAAACCCTTTATCT 479 |||||||||||||||||||||| ||||||||| |||||||||||||| ||| || |||| Sbjct 420 TAATGTTGTTATGGATGTCCCTTCTTCGGTTTCTCTGAAATCCCTTAGAACTCTGCATCT 479 Query 480 TCTAGCTGTGGACTTCAAAGACGATGAATCAGTTATTAACCTTTTATCTGGCTGTCCTAA 539 |||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 480 TCTAGCTGTGGACTTCAAAGACGATGAATCCGTTATTAACCTTATATCTGGCTGTCCTAA 539 Query 540 TCTTCAAGATTTGGTAATGCGTAGAAATTCAAGTAGTAATGTGAAAACTTTCACTATTGC 599 |||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 540 TCTTGAAGATTTGGTAATGCGTAGAAATTCAAGTAGTAGTGTGAAAACTTTCACTATTGT 599 Query 600 AGTGCCATCTTTACA-AAGACTAGCCATTCATAATGGCAGTGGTACACCACAACATTGTG 658 ||||||||||||||| || |||||| ||||||||||||||||||| || ||||||||| | Sbjct 600 AGTGCCATCTTTACAGAA-ACTAGCAATTCATAATGGCAGTGGTAGACAACAACATTGGG 658 Query 659 GATATACCATAAATACTCCTTCTTTGAAATACTTGAAACTTGAAGGGTCTAAGGCTTTTG 718 | ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 659 GCTATGTGATAAATACTCCTTCTTTGAAATACTTGAAGCTTGAAGGGTCTAAGGCTTTTG 718 Query 719 AGTCTTTTATGGTTGAGAACGTATCGGAGCTGATAGAGGTAAATATTACTGATGTCTCTG 778 ||||||||||| ||||||||||| ||||||| || |||||| ||||||| |||||||||| Sbjct 719 AGTCTTTTATGATTGAGAACGTACCGGAGCTTATGGAGGTACATATTACCGATGTCTCTG 778 Query 779 AGATAATCGACGAGAAGCTTCGGGTATTTCTTACTTCAGTTACACGTCTTTCCTTGGCTT 838 |||||||||||||||| |||| ||||||||| ||||| |||| ||||||||||||||||| Sbjct 779 AGATAATCGACGAGAAACTTCTGGTATTTCTCACTTCGGTTAAACGTCTTTCCTTGGCTT 838 Query 839 TATCA-CCATCGGTGTTTACGTTTCCTACCGGTATCATCTTCAACCAGTTAGTATATTTG 897 || || ||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 839 TAACACCCA-CGGTGTTTACGTTTCCTACCGGTATCATCTTCAACCAGTTAGTATATTTG 897 Query 898 GAGATATGTACAAATAAAACATCATGGTGGAAACTACTTCCCCTCATGCTCCATAGTTCT 957 ||| ||| ||||||||||| | |||||||||||||||||||||| |||||||||||||| Sbjct 898 GAGGTATATACAAATAAAAAAGAATGGTGGAAACTACTTCCCCTCGTGCTCCATAGTTCT 957 Query 958 CCTAAACTCCAAGTCCTCAAGCTCATCGATGACACAGATGGGATGAACTATGTTGAGGCT 1017 |||||||| ||||||||||||||||||||||||| |||| ||||||||| |||||||||| Sbjct 958 CCTAAACTGCAAGTCCTCAAGCTCATCGATGACATAGATTGGATGAACTTTGTTGAGGCT 1017 Query 1018 AGTGGAGAATGGAATCAACCAAAAAATGTTCCTGAATGTTTGCAC---CATCTTGAGAAA 1074 ||||||||||||||||||||||| ||||| |||||||||||| |||||||||| | Sbjct 1018 AGTGGAGAATGGAATCAACCAAAGAATGTACCTGAATGTTTGTTGTTTCATCTTGAGACA 1077 Query 1075 TTCATTTGGGAAGGCTACAAATGGAAACGTGAAGAG-A--TAGAAGTGGCGAAATACATT 1131 ||||| ||||||||||||||||||||||| |||||| | |||||||||||||||||||| Sbjct 1078 TTCATGTGGGAAGGCTACAAATGGAAACGAGAAGAGGAGGTAGAAGTGGCGAAATACATT 1137 Query 1132 CTAAAGAACACGAATCGTTTGAAGAGAGCTATTTTCTCCCTAAAAGGTATTAGTTCTGAA 1191 ||||||||||||| |||||||||| |||||| |||||||||||| |||| ||||||||| Sbjct 1138 TTAAAGAACACGAACCGTTTGAAGAAAGCTATGTTCTCCCTAAAATGTATCAGTTCTGAA 1197 Query 1192 GATAGGCTTGTGGTGGTTGAAGATTTGAAAAGTGTTGTCATGGCTACAACAAATTCATGC 1251 || |||||||| |||||| |||||||||||| |||||||| ||||||||||||||||||| Sbjct 1198 GAGAGGCTTGTAGTGGTTAAAGATTTGAAAAATGTTGTCAGGGCTACAACAAATTCATGC 1257 Query 1252 CAGTTTCAATTCATATG 1268 ||||||||||||||||| Sbjct 1258 CAGTTTCAATTCATATG 1274 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47424908748 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5