BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55035.1
Length=1532
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474778 jgi|Araly1|474778|fgenesh2_kg.1__4732__AT1G55035.1 1581 0.0
Ahg477986 jgi|Araly1|477986|fgenesh2_kg.3__687__AT3G06720.1 1194 0.0
> Ahg474778 jgi|Araly1|474778|fgenesh2_kg.1__4732__AT1G55035.1
Length=1159
Score = 1581 bits (856), Expect = 0.0
Identities = 1067/1168 (91%), Gaps = 18/1168 (2%)
Strand=Plus/Plus
Query 1 ATGTCGCTGAATCCTAATACCAAAGCGGAGGTCCGCCGGAATCAGTACAAAGTTGCGGTG 60
||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGTCGCTGAATCCTAACACCAGAGCGGAGGTCCGCCGGAATCAGTACAAGGTTGCGGTG 60
Query 61 GATGCAGAGGAGGGACGACGGAGGAGAGAAG-AGAGCATGGTTGAGGTTCGTAAAATCAA 119
||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||
Sbjct 61 GATGCAGAGGAGGGACGACGGAGGAGAGAAGCA-AACATGGTTGAGGTTCGTAAAATCAA 119
Query 120 ACGCGAGGAGAGTCTGATGAAGAAGAGGCGTGAAGTTCTTGATGAGTTCTCGGGTTTGGT 179
|| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 120 GCGAGAGGAGAGTCTGATGAAGAAGAGGCGTGAAGTTCTTAATGAATTCTCGGGTTTGGT 179
Query 180 TGATACGAAGTTGGAGAGTTTGTCGGATATGGTCGCTGGGGTTTGGTCAGATGATCTTGC 239
||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||
Sbjct 180 CGATACGAAGTTGGAGAGTTTGTCGGATATGGTCGCTGGGGTTTTGTCGGATGATATTGC 239
Query 240 CTTGCAGCTCAAGTACA-CTACTCAAATCAGGGCCCTTCTATCTAGGGCGAGAGATCCTC 298
|||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||
Sbjct 240 CTTGCAGCTCAAGT-CAACTACTCAAATCAGGGAGCTTCTATCTAGGGCGAGAGATCCTC 298
Query 299 TAATCGACGAAGTGATAGATTCTGGTGTTGTTCCTCGGTTTGTAGAGTTTCTTAAGAAAG 358
||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 299 CAATCGACGAAGTGATAGATTCTGGTGTTGTTCCTCGGTTCGTTGAGTTTCTTAAGAAAG 358
Query 359 AAGATAACCCTAAGATTCAGTATGAGGCAGCTTGGGCTCTAACAAACATTGTATCAGGAA 418
||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 359 AAGATAACCCTAATATTCAGTATGAGGCAGCTTGGGCTCTAACAAACATTGCATCTGGAA 418
Query 419 CTTCAAATCATACAAAGGTTGTAGTAGATCTCAATGCTGTTCCGATCTTTGTCCACCTTC 478
| ||| |||||||||||||||||||||||| |||||||||||| || |||||||| ||||
Sbjct 419 CATCAGATCATACAAAGGTTGTAGTAGATCACAATGCTGTTCCAATTTTTGTCCAGCTTC 478
Query 479 TTGCTTCTTCCCCAAGCGACGATGTCCGTGAACTAGCTGTATGGGCGTTAGGTAACAT-T 537
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 479 TTGCTTCTTCCCCAAGCGATGATGTCCGTGAACTAGCTGTATGGGCGTTAGGTAACGTGT 538
Query 538 GCTGGTGATTCACCGCAATTCTGTACAT-ATGTTCTTAAATGTGGGGCACTTGTTCCGCT 596
||| ||||||| |||||| | || || |||| || | |||||| ||||||||||||||
Sbjct 539 -CTGCTGATTCATCGCAATGCCGTG-ATTATGTCCTCAGATGTGGAGCACTTGTTCCGCT 596
Query 597 TCTCAATCAGCTTAATTAGCATACC-AAGTTGTCTACGCTTAGAGAAGTCACATGGACTT 655
|||||||||||||||| |||||||| || ||||||| |||||||||||||||||||||||
Sbjct 597 TCTCAATCAGCTTAATGAGCATACCGAA-TTGTCTATGCTTAGAGAAGTCACATGGACTT 655
Query 656 TGTCAAACTTGTGTCGTGGTGGACA-GGCGAATCCCGCAGCGTTTCAAGCCCTTGAACGA 714
||||| |||||||| ||| ||| || |||||||||||||||| |||||||||||||||||
Sbjct 656 TGTCACACTTGTGTGGTGATGG-CAAGGCGAATCCCGCAGCGCTTCAAGCCCTTGAACGA 714
Query 715 TTAATTCATTCTACTGATGAACAAGTCTTGGAAAAA-GCTTGTTGGGCTCTCAAGTATCT 773
||||||||||||||||||||||||||||| | ||| ||||||||||||||||| | ||
Sbjct 715 GTAATTCATTCTACTGATGAACAAGTCTTG-ACAAATGCTTGTTGGGCTCTCAAATCCCT 773
Query 774 ATCTAAAGGAACCGATGACAAAATCCAGATTGTTATCGAGGCTGGTGTTGTACCAAGACT 833
||| || || ||||||||||||||| ||| |||||||| |||||||||||||||||
Sbjct 774 CTCTGGTGGGACTAATGACAAAATCCAGAATGTCATCGAGGCCGGTGTTGTACCAAGACT 833
Query 834 CGTTGAACTTCTGCTCCATCCTTCTATA-CATGTGCTAATTCCTGCGCTTCTCACTGTTG 892
||||||||||| ||||||||||||||| | |||| ||||||||||||||| ||| ||||
Sbjct 834 TGTTGAACTTCTCCTCCATCCTTCTATATC-TGTGGTAATTCCTGCGCTTCGCACAGTTG 892
Query 893 GAAATATAGTTACTGGAAATGATCTACAAACGCAGTGTGTGATCGACAGTGGTGCTTTAC 952
||||||||||||||||| ||||||||||||||||||||||||| || |||||||||||||
Sbjct 893 GAAATATAGTTACTGGAGATGATCTACAAACGCAGTGTGTGATAGATAGTGGTGCTTTAC 952
Query 953 CTTGTTTTCTCAACATTCTAACTCACAACTATAAGAAAGATATTAAGAAGGATGCTTGTT 1012
|||||||| ||||| |||||||||| |||||||||||| ||||||||||||| |||||||
Sbjct 953 CTTGTTTTGTCAACCTTCTAACTCAAAACTATAAGAAAAATATTAAGAAGGAAGCTTGTT 1012
Query 1013 GGACGATTTCAAACATCACTGCAGGAACACAAGAACAGATCCAGATGGTAATAGAGGCTA 1072
|||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| |||
Sbjct 1013 GGACGATTTCGAACATCACAGCAGGAACACATGAACAGATCCAGATGGTAATAGAGTCTA 1072
Query 1073 ATTTGATTGATCCGTTGGTTCATCTGCT-TCAATATGCTGAATTTGACATTAAGAAAGAA 1131
||||||||| || || ||| ||||| | |||||||||||||||||||||||||||||||
Sbjct 1073 ATTTGATTGCCCCCTTAGTTAATCTG-TGTCAATATGCTGAATTTGACATTAAGAAAGAA 1131
Query 1132 GCAGCATGGGCAATTTACAATGTAACTT 1159
|| ||||||||||||| ||||||| |||
Sbjct 1132 GCTGCATGGGCAATTTCCAATGTAGCTT 1159
> Ahg477986 jgi|Araly1|477986|fgenesh2_kg.3__687__AT3G06720.1
Length=2193
Score = 1194 bits (646), Expect = 0.0
Identities = 1256/1537 (82%), Gaps = 95/1537 (6%)
Strand=Plus/Plus
Query 1 ATGTCGCTGA-ATCCTAATACCAAAG-CGGAGGTCCGCCGGAATCA-GTACAAAGTTGCG 57
|||||||||| | || || || | | ||||||| |||||||| || ||||||||||||
Sbjct 236 ATGTCGCTGAGA-CCCAACGCC-AGGACGGAGGTTCGCCGGAA-CAGGTACAAAGTTGCT 292
Query 58 GTGGATGCAGAGGAGGGACGACGGAGGAGAGAAGAGAGCATGGTTGAGGTTCGTAAAA-T 116
|||||||| ||||| ||||||||||||||||| || | |||||||||| | ||||||| |
Sbjct 293 GTGGATGCGGAGGAAGGACGACGGAGGAGAGAGGACAACATGGTTGAGATCCGTAAAAGT 352
Query 117 CAAACGCGAGGAGAGTCTGATGAAGAAGAGGCGTGAA-G--T------TCTTGATGAGTT 167
|| || ||||||||| ||||||||||||| |||||| | | |||| | || ||
Sbjct 353 -AAGCGTGAGGAGAGTTTGATGAAGAAGAGACGTGAAGGTATGCAAGCTCTTCAGGATTT 411
Query 168 --C-TCGGGTT-TG--G--T---T-GATACGAAGTTGGAGAGTTTGTC-GGATATGGTCG 214
| || | || | | | | |||| |||||||||||||||| | |||||||||||
Sbjct 412 CCCTTCAGCTTCCGCCGCCTCCGTCGATAAGAAGTTGGAGAGTTTG-CAGGATATGGTCG 470
Query 215 CTGGGGTTTGGTCAGATGATCTTGCCTTGCAGCTCAAGTACACTACTCAAATCAGGGCCC 274
||||||||| ||| ||||||| |||||||||||| ||| ||||||||| ||||| |
Sbjct 471 CTGGGGTTTTGTCCGATGATCCTGCCTTGCAGCTTGAGTCCACTACTCAGTTCAGGAAGC 530
Query 275 TTCTATCTAGGGCGAG-AGATCCTCTAATCGACGAAGTGATAGATTCTGGTGTTGTTCCT 333
|||| |||| | ||| || ||||| |||||| |||||||||| | ||||||||||||||
Sbjct 531 TTCTCTCTATTGAGAGAAG-TCCTCCAATCGAGGAAGTGATAGCTGCTGGTGTTGTTCCT 589
Query 334 CGGTTTGTAGAGTTTCTTAAGAAAGAAGATAACCCTAAGATTCAGTATGAGGCAGCTTGG 393
|||||||| ||||||||||||||||||||| |||| |||||||| |||||||||||||
Sbjct 590 CGGTTTGTTGAGTTTCTTAAGAAAGAAGATTACCCCGCGATTCAGTTTGAGGCAGCTTGG 649
Query 394 GCTCTAACAAACATTGTATCAGGAACTTCAAATCATACAAAGGTTGTAGTAGATCTCAAT 453
||||| |||||||||| ||| ||||| || |||| || ||||||||| | |||| ||||
Sbjct 650 GCTCTGACAAACATTGCATCTGGAACATCCGATCACACTAAGGTTGTAATCGATCACAAT 709
Query 454 GCTGTTCCGA-TCTTTGTCCACCTTCTTGCTTCTTCCCCAAGCGACGATGTCCGTGAACT 512
|||||||| | ||||||| || ||||||| ||||||| ||||| ||||||||||| |
Sbjct 710 GCTGTTCC-AGTCTTTGTACAGCTTCTTG---CTTCCCCTAGCGATGATGTCCGTGAGC- 764
Query 513 A-GCTGTATGGGCGTTAGGTAACATTGCTGGTGATTCACCGCAATTCTGTACAT-ATGTT 570
| ||||||||||| || |||||| |||||||||||||||| | | | || || ||||
Sbjct 765 AGGCTGTATGGGCTTTGGGTAACGTTGCTGGTGATTCACCACGGTGCCGT-GATCTTGTT 823
Query 571 CTTAAATGTGGGGCACTTG-TTCCGCTTCTCAATCAGCTTAATTAGCATACCAAGTTGTC 629
||| |||| |||||| || ||||||| ||||||||||||||| ||||| |||| |||||
Sbjct 824 CTTGGATGTAGGGCAC-TGCTTCCGCTGCTCAATCAGCTTAATGAGCATGCCAAATTGTC 882
Query 630 TACGCTTAGAGAA-GTCACATGGACTTTGTCAAACTTGTGTCGTGG--TG-GACAGGC-G 684
| |||| || || | ||||||||| ||||||||||| |||||||| | ||| |
Sbjct 883 CATGCTTCGA-AATGCCACATGGACCTTGTCAAACTTCTGTCGTGGCAAGCCTCAGCCTC 941
Query 685 A--AT--CC---CG-CAGC-G-T-TTCAAGCCCTTGAACGATTAATTCATTCTACTGATG 733
| | || | | | | | ||| |||||||||||| |||||||||| | |||||
Sbjct 942 ACTTTGACCAGGTGAAACCTGCTCTTCCGGCCCTTGAACGACTAATTCATTCAAATGATG 1001
Query 734 AACAAGTCTTGGA-AAAAGCTTGTTGGGCTCTC-AAGTATCTATCTAAAGGAACCGATGA 791
|| ||||||| || | | || |||||||||||| | || || ||| | || ||| ||||
Sbjct 1002 AAGAAGTCTT-GACAGATGCCTGTTGGGCTCTCTCA-TACCTCTCTGATGGGACCAATGA 1059
Query 792 CAAAATCCAGATTGTTATCGAGGCTGGTGTTGTACCAAGACTCGTTGAACTTCTGCTCCA 851
||||||||||| ||| |||||||| |||||||| |||||||| ||||||||||| |||||
Sbjct 1060 CAAAATCCAGACTGTCATCGAGGCCGGTGTTGTCCCAAGACTTGTTGAACTTCTCCTCCA 1119
Query 852 TCCTTCT--ATACATGTGCTAATTCCTGCGCTTCTCACTGTTGGAAATATAGTTACTGGA 909
||||||| || | ||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1120 TCCTTCTCCAT-C-TGTGCTAATTCCTGCACTTCGCACTGTTGGAAATATAGTTACTGGA 1177
Query 910 AATGATCTACAAACGCAGTGTGTGATCGACAGTGGTGCTTTACCTTGT-TTTCTCAACAT 968
||||| ||||||| ||||| |||||| | ||||||||| |||||||| || | |||| |
Sbjct 1178 GATGATTTACAAACACAGTGGGTGATCAATAGTGGTGCTCTACCTTGTCTTGC-CAAC-T 1235
Query 969 T-CTAACTCACAACTATAAG-AAAGATATTAAGAAGGATGCTTGTTGGACGATTTCAAAC 1026
| || ||||| ||||||||| |||| || |||||||| ||||| |||||||||||||||
Sbjct 1236 TGCTCACTCAAAACTATAAGAAAAG-CATAAAGAAGGAAGCTTGCTGGACGATTTCAAAC 1294
Query 1027 ATCACTGCAGG-AACACAAGAACAGATCCAGATGGTAATAGAGGCTAATTTGATTGATCC 1085
||||| ||||| |||| |||| |||||||||| |||| | |||||||||||||||| ||
Sbjct 1295 ATCACAGCAGGCAACA-AAGATCAGATCCAGACGGTAGTTGAGGCTAATTTGATTGCCCC 1353
Query 1086 GTTGGTTCA-TCTGCTTCAATATGCTGAATTTGACATTAAGAAAGAAGCAGCATGGGCAA 1144
| ||| | | |||||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 1354 GCTGG-TGAGTCTGCTTCAAAATGCTGAATTTGACATTAAGAAAGAAGCTGCATGGGCAA 1412
Query 1145 TTTACAA-TGTAACTTCAGGTTGT-C--ATGATCAAGTCAAGTACCTTGTGGAGCAAGGA 1200
||| ||| || |||||||||| || | |||||||| |||| |||| ||||||||||||
Sbjct 1413 TTT-CAAATGCAACTTCAGGTGGTTCTCATGATCAAATCAAACACCTGGTGGAGCAAGGA 1471
Query 1201 TGCATAACACCGTTATGCGATCTTTT-GTTATGTGCAGATCCAAAAATCATAATTATCTG 1259
||||||| ||| |||||||| || | || ||| ||||||||| |||||||| | ||
Sbjct 1472 TGCATAAAACCATTATGCGACCTCCTAGT-ATGCCCAGATCCAAGAATCATAACGGTGTG 1530
Query 1260 CCTTAAAGGATTAGAAAACATTTTGAAAGTGGGAGAGGCAGAGAAGAACTTAGGTAATAC 1319
|||| ||||||| |||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 1531 CCTTGAAGGATTGGAAAACATTTTGAAGGTGGGAGAGGCAGAGAAGAACTTGGGTAACAC 1590
Query 1320 AGGGGACATGAACTATTACACGTACCTGATTGATGATGCAGGAGGGCTAGAAAATAT-GA 1378
||| ||||||||||||||| | | |||||||||||||||| |||||||||||| || ||
Sbjct 1591 AGGAGACATGAACTATTACGCACAGCTGATTGATGATGCAGAAGGGCTAGAAAAGATTGA 1650
Query 1379 TGGAAC-TTCAG-GACCATGACAACAGTGAGATCTATGAAAAAGCTGT-AAAAGTTATGG 1435
| ||| ||||| | ||||||||||| |||||||||||| || ||||| |||| || |||
Sbjct 1651 -G-AACCTTCAGAG-CCATGACAACAATGAGATCTATGAGAAGGCTGTTAAAA-TTCTGG 1706
Query 1436 AGACATATTGGGT-GTAGAAGAAGCTGACGAGACACA 1471
||||||| ||| | | ||| |||| ||| ||||||||
Sbjct 1707 AGACATACTGGCTTGAAGAGGAAGATGATGAGACACA 1743
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57363908970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5