BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G55035.1 Length=1532 Score E Sequences producing significant alignments: (Bits) Value Ahg474778 jgi|Araly1|474778|fgenesh2_kg.1__4732__AT1G55035.1 1581 0.0 Ahg477986 jgi|Araly1|477986|fgenesh2_kg.3__687__AT3G06720.1 1194 0.0 > Ahg474778 jgi|Araly1|474778|fgenesh2_kg.1__4732__AT1G55035.1 Length=1159 Score = 1581 bits (856), Expect = 0.0 Identities = 1067/1168 (91%), Gaps = 18/1168 (2%) Strand=Plus/Plus Query 1 ATGTCGCTGAATCCTAATACCAAAGCGGAGGTCCGCCGGAATCAGTACAAAGTTGCGGTG 60 ||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||| Sbjct 1 ATGTCGCTGAATCCTAACACCAGAGCGGAGGTCCGCCGGAATCAGTACAAGGTTGCGGTG 60 Query 61 GATGCAGAGGAGGGACGACGGAGGAGAGAAG-AGAGCATGGTTGAGGTTCGTAAAATCAA 119 ||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||| Sbjct 61 GATGCAGAGGAGGGACGACGGAGGAGAGAAGCA-AACATGGTTGAGGTTCGTAAAATCAA 119 Query 120 ACGCGAGGAGAGTCTGATGAAGAAGAGGCGTGAAGTTCTTGATGAGTTCTCGGGTTTGGT 179 || |||||||||||||||||||||||||||||||||||| |||| |||||||||||||| Sbjct 120 GCGAGAGGAGAGTCTGATGAAGAAGAGGCGTGAAGTTCTTAATGAATTCTCGGGTTTGGT 179 Query 180 TGATACGAAGTTGGAGAGTTTGTCGGATATGGTCGCTGGGGTTTGGTCAGATGATCTTGC 239 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||| Sbjct 180 CGATACGAAGTTGGAGAGTTTGTCGGATATGGTCGCTGGGGTTTTGTCGGATGATATTGC 239 Query 240 CTTGCAGCTCAAGTACA-CTACTCAAATCAGGGCCCTTCTATCTAGGGCGAGAGATCCTC 298 |||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||| Sbjct 240 CTTGCAGCTCAAGT-CAACTACTCAAATCAGGGAGCTTCTATCTAGGGCGAGAGATCCTC 298 Query 299 TAATCGACGAAGTGATAGATTCTGGTGTTGTTCCTCGGTTTGTAGAGTTTCTTAAGAAAG 358 ||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| Sbjct 299 CAATCGACGAAGTGATAGATTCTGGTGTTGTTCCTCGGTTCGTTGAGTTTCTTAAGAAAG 358 Query 359 AAGATAACCCTAAGATTCAGTATGAGGCAGCTTGGGCTCTAACAAACATTGTATCAGGAA 418 ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| |||| Sbjct 359 AAGATAACCCTAATATTCAGTATGAGGCAGCTTGGGCTCTAACAAACATTGCATCTGGAA 418 Query 419 CTTCAAATCATACAAAGGTTGTAGTAGATCTCAATGCTGTTCCGATCTTTGTCCACCTTC 478 | ||| |||||||||||||||||||||||| |||||||||||| || |||||||| |||| Sbjct 419 CATCAGATCATACAAAGGTTGTAGTAGATCACAATGCTGTTCCAATTTTTGTCCAGCTTC 478 Query 479 TTGCTTCTTCCCCAAGCGACGATGTCCGTGAACTAGCTGTATGGGCGTTAGGTAACAT-T 537 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | | Sbjct 479 TTGCTTCTTCCCCAAGCGATGATGTCCGTGAACTAGCTGTATGGGCGTTAGGTAACGTGT 538 Query 538 GCTGGTGATTCACCGCAATTCTGTACAT-ATGTTCTTAAATGTGGGGCACTTGTTCCGCT 596 ||| ||||||| |||||| | || || |||| || | |||||| |||||||||||||| Sbjct 539 -CTGCTGATTCATCGCAATGCCGTG-ATTATGTCCTCAGATGTGGAGCACTTGTTCCGCT 596 Query 597 TCTCAATCAGCTTAATTAGCATACC-AAGTTGTCTACGCTTAGAGAAGTCACATGGACTT 655 |||||||||||||||| |||||||| || ||||||| ||||||||||||||||||||||| Sbjct 597 TCTCAATCAGCTTAATGAGCATACCGAA-TTGTCTATGCTTAGAGAAGTCACATGGACTT 655 Query 656 TGTCAAACTTGTGTCGTGGTGGACA-GGCGAATCCCGCAGCGTTTCAAGCCCTTGAACGA 714 ||||| |||||||| ||| ||| || |||||||||||||||| ||||||||||||||||| Sbjct 656 TGTCACACTTGTGTGGTGATGG-CAAGGCGAATCCCGCAGCGCTTCAAGCCCTTGAACGA 714 Query 715 TTAATTCATTCTACTGATGAACAAGTCTTGGAAAAA-GCTTGTTGGGCTCTCAAGTATCT 773 ||||||||||||||||||||||||||||| | ||| ||||||||||||||||| | || Sbjct 715 GTAATTCATTCTACTGATGAACAAGTCTTG-ACAAATGCTTGTTGGGCTCTCAAATCCCT 773 Query 774 ATCTAAAGGAACCGATGACAAAATCCAGATTGTTATCGAGGCTGGTGTTGTACCAAGACT 833 ||| || || ||||||||||||||| ||| |||||||| ||||||||||||||||| Sbjct 774 CTCTGGTGGGACTAATGACAAAATCCAGAATGTCATCGAGGCCGGTGTTGTACCAAGACT 833 Query 834 CGTTGAACTTCTGCTCCATCCTTCTATA-CATGTGCTAATTCCTGCGCTTCTCACTGTTG 892 ||||||||||| ||||||||||||||| | |||| ||||||||||||||| ||| |||| Sbjct 834 TGTTGAACTTCTCCTCCATCCTTCTATATC-TGTGGTAATTCCTGCGCTTCGCACAGTTG 892 Query 893 GAAATATAGTTACTGGAAATGATCTACAAACGCAGTGTGTGATCGACAGTGGTGCTTTAC 952 ||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| Sbjct 893 GAAATATAGTTACTGGAGATGATCTACAAACGCAGTGTGTGATAGATAGTGGTGCTTTAC 952 Query 953 CTTGTTTTCTCAACATTCTAACTCACAACTATAAGAAAGATATTAAGAAGGATGCTTGTT 1012 |||||||| ||||| |||||||||| |||||||||||| ||||||||||||| ||||||| Sbjct 953 CTTGTTTTGTCAACCTTCTAACTCAAAACTATAAGAAAAATATTAAGAAGGAAGCTTGTT 1012 Query 1013 GGACGATTTCAAACATCACTGCAGGAACACAAGAACAGATCCAGATGGTAATAGAGGCTA 1072 |||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| ||| Sbjct 1013 GGACGATTTCGAACATCACAGCAGGAACACATGAACAGATCCAGATGGTAATAGAGTCTA 1072 Query 1073 ATTTGATTGATCCGTTGGTTCATCTGCT-TCAATATGCTGAATTTGACATTAAGAAAGAA 1131 ||||||||| || || ||| ||||| | ||||||||||||||||||||||||||||||| Sbjct 1073 ATTTGATTGCCCCCTTAGTTAATCTG-TGTCAATATGCTGAATTTGACATTAAGAAAGAA 1131 Query 1132 GCAGCATGGGCAATTTACAATGTAACTT 1159 || ||||||||||||| ||||||| ||| Sbjct 1132 GCTGCATGGGCAATTTCCAATGTAGCTT 1159 > Ahg477986 jgi|Araly1|477986|fgenesh2_kg.3__687__AT3G06720.1 Length=2193 Score = 1194 bits (646), Expect = 0.0 Identities = 1256/1537 (82%), Gaps = 95/1537 (6%) Strand=Plus/Plus Query 1 ATGTCGCTGA-ATCCTAATACCAAAG-CGGAGGTCCGCCGGAATCA-GTACAAAGTTGCG 57 |||||||||| | || || || | | ||||||| |||||||| || |||||||||||| Sbjct 236 ATGTCGCTGAGA-CCCAACGCC-AGGACGGAGGTTCGCCGGAA-CAGGTACAAAGTTGCT 292 Query 58 GTGGATGCAGAGGAGGGACGACGGAGGAGAGAAGAGAGCATGGTTGAGGTTCGTAAAA-T 116 |||||||| ||||| ||||||||||||||||| || | |||||||||| | ||||||| | Sbjct 293 GTGGATGCGGAGGAAGGACGACGGAGGAGAGAGGACAACATGGTTGAGATCCGTAAAAGT 352 Query 117 CAAACGCGAGGAGAGTCTGATGAAGAAGAGGCGTGAA-G--T------TCTTGATGAGTT 167 || || ||||||||| ||||||||||||| |||||| | | |||| | || || Sbjct 353 -AAGCGTGAGGAGAGTTTGATGAAGAAGAGACGTGAAGGTATGCAAGCTCTTCAGGATTT 411 Query 168 --C-TCGGGTT-TG--G--T---T-GATACGAAGTTGGAGAGTTTGTC-GGATATGGTCG 214 | || | || | | | | |||| |||||||||||||||| | ||||||||||| Sbjct 412 CCCTTCAGCTTCCGCCGCCTCCGTCGATAAGAAGTTGGAGAGTTTG-CAGGATATGGTCG 470 Query 215 CTGGGGTTTGGTCAGATGATCTTGCCTTGCAGCTCAAGTACACTACTCAAATCAGGGCCC 274 ||||||||| ||| ||||||| |||||||||||| ||| ||||||||| ||||| | Sbjct 471 CTGGGGTTTTGTCCGATGATCCTGCCTTGCAGCTTGAGTCCACTACTCAGTTCAGGAAGC 530 Query 275 TTCTATCTAGGGCGAG-AGATCCTCTAATCGACGAAGTGATAGATTCTGGTGTTGTTCCT 333 |||| |||| | ||| || ||||| |||||| |||||||||| | |||||||||||||| Sbjct 531 TTCTCTCTATTGAGAGAAG-TCCTCCAATCGAGGAAGTGATAGCTGCTGGTGTTGTTCCT 589 Query 334 CGGTTTGTAGAGTTTCTTAAGAAAGAAGATAACCCTAAGATTCAGTATGAGGCAGCTTGG 393 |||||||| ||||||||||||||||||||| |||| |||||||| ||||||||||||| Sbjct 590 CGGTTTGTTGAGTTTCTTAAGAAAGAAGATTACCCCGCGATTCAGTTTGAGGCAGCTTGG 649 Query 394 GCTCTAACAAACATTGTATCAGGAACTTCAAATCATACAAAGGTTGTAGTAGATCTCAAT 453 ||||| |||||||||| ||| ||||| || |||| || ||||||||| | |||| |||| Sbjct 650 GCTCTGACAAACATTGCATCTGGAACATCCGATCACACTAAGGTTGTAATCGATCACAAT 709 Query 454 GCTGTTCCGA-TCTTTGTCCACCTTCTTGCTTCTTCCCCAAGCGACGATGTCCGTGAACT 512 |||||||| | ||||||| || ||||||| ||||||| ||||| ||||||||||| | Sbjct 710 GCTGTTCC-AGTCTTTGTACAGCTTCTTG---CTTCCCCTAGCGATGATGTCCGTGAGC- 764 Query 513 A-GCTGTATGGGCGTTAGGTAACATTGCTGGTGATTCACCGCAATTCTGTACAT-ATGTT 570 | ||||||||||| || |||||| |||||||||||||||| | | | || || |||| Sbjct 765 AGGCTGTATGGGCTTTGGGTAACGTTGCTGGTGATTCACCACGGTGCCGT-GATCTTGTT 823 Query 571 CTTAAATGTGGGGCACTTG-TTCCGCTTCTCAATCAGCTTAATTAGCATACCAAGTTGTC 629 ||| |||| |||||| || ||||||| ||||||||||||||| ||||| |||| ||||| Sbjct 824 CTTGGATGTAGGGCAC-TGCTTCCGCTGCTCAATCAGCTTAATGAGCATGCCAAATTGTC 882 Query 630 TACGCTTAGAGAA-GTCACATGGACTTTGTCAAACTTGTGTCGTGG--TG-GACAGGC-G 684 | |||| || || | ||||||||| ||||||||||| |||||||| | ||| | Sbjct 883 CATGCTTCGA-AATGCCACATGGACCTTGTCAAACTTCTGTCGTGGCAAGCCTCAGCCTC 941 Query 685 A--AT--CC---CG-CAGC-G-T-TTCAAGCCCTTGAACGATTAATTCATTCTACTGATG 733 | | || | | | | | ||| |||||||||||| |||||||||| | ||||| Sbjct 942 ACTTTGACCAGGTGAAACCTGCTCTTCCGGCCCTTGAACGACTAATTCATTCAAATGATG 1001 Query 734 AACAAGTCTTGGA-AAAAGCTTGTTGGGCTCTC-AAGTATCTATCTAAAGGAACCGATGA 791 || ||||||| || | | || |||||||||||| | || || ||| | || ||| |||| Sbjct 1002 AAGAAGTCTT-GACAGATGCCTGTTGGGCTCTCTCA-TACCTCTCTGATGGGACCAATGA 1059 Query 792 CAAAATCCAGATTGTTATCGAGGCTGGTGTTGTACCAAGACTCGTTGAACTTCTGCTCCA 851 ||||||||||| ||| |||||||| |||||||| |||||||| ||||||||||| ||||| Sbjct 1060 CAAAATCCAGACTGTCATCGAGGCCGGTGTTGTCCCAAGACTTGTTGAACTTCTCCTCCA 1119 Query 852 TCCTTCT--ATACATGTGCTAATTCCTGCGCTTCTCACTGTTGGAAATATAGTTACTGGA 909 ||||||| || | ||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 1120 TCCTTCTCCAT-C-TGTGCTAATTCCTGCACTTCGCACTGTTGGAAATATAGTTACTGGA 1177 Query 910 AATGATCTACAAACGCAGTGTGTGATCGACAGTGGTGCTTTACCTTGT-TTTCTCAACAT 968 ||||| ||||||| ||||| |||||| | ||||||||| |||||||| || | |||| | Sbjct 1178 GATGATTTACAAACACAGTGGGTGATCAATAGTGGTGCTCTACCTTGTCTTGC-CAAC-T 1235 Query 969 T-CTAACTCACAACTATAAG-AAAGATATTAAGAAGGATGCTTGTTGGACGATTTCAAAC 1026 | || ||||| ||||||||| |||| || |||||||| ||||| ||||||||||||||| Sbjct 1236 TGCTCACTCAAAACTATAAGAAAAG-CATAAAGAAGGAAGCTTGCTGGACGATTTCAAAC 1294 Query 1027 ATCACTGCAGG-AACACAAGAACAGATCCAGATGGTAATAGAGGCTAATTTGATTGATCC 1085 ||||| ||||| |||| |||| |||||||||| |||| | |||||||||||||||| || Sbjct 1295 ATCACAGCAGGCAACA-AAGATCAGATCCAGACGGTAGTTGAGGCTAATTTGATTGCCCC 1353 Query 1086 GTTGGTTCA-TCTGCTTCAATATGCTGAATTTGACATTAAGAAAGAAGCAGCATGGGCAA 1144 | ||| | | |||||||||| |||||||||||||||||||||||||||| |||||||||| Sbjct 1354 GCTGG-TGAGTCTGCTTCAAAATGCTGAATTTGACATTAAGAAAGAAGCTGCATGGGCAA 1412 Query 1145 TTTACAA-TGTAACTTCAGGTTGT-C--ATGATCAAGTCAAGTACCTTGTGGAGCAAGGA 1200 ||| ||| || |||||||||| || | |||||||| |||| |||| |||||||||||| Sbjct 1413 TTT-CAAATGCAACTTCAGGTGGTTCTCATGATCAAATCAAACACCTGGTGGAGCAAGGA 1471 Query 1201 TGCATAACACCGTTATGCGATCTTTT-GTTATGTGCAGATCCAAAAATCATAATTATCTG 1259 ||||||| ||| |||||||| || | || ||| ||||||||| |||||||| | || Sbjct 1472 TGCATAAAACCATTATGCGACCTCCTAGT-ATGCCCAGATCCAAGAATCATAACGGTGTG 1530 Query 1260 CCTTAAAGGATTAGAAAACATTTTGAAAGTGGGAGAGGCAGAGAAGAACTTAGGTAATAC 1319 |||| ||||||| |||||||||||||| ||||||||||||||||||||||| ||||| || Sbjct 1531 CCTTGAAGGATTGGAAAACATTTTGAAGGTGGGAGAGGCAGAGAAGAACTTGGGTAACAC 1590 Query 1320 AGGGGACATGAACTATTACACGTACCTGATTGATGATGCAGGAGGGCTAGAAAATAT-GA 1378 ||| ||||||||||||||| | | |||||||||||||||| |||||||||||| || || Sbjct 1591 AGGAGACATGAACTATTACGCACAGCTGATTGATGATGCAGAAGGGCTAGAAAAGATTGA 1650 Query 1379 TGGAAC-TTCAG-GACCATGACAACAGTGAGATCTATGAAAAAGCTGT-AAAAGTTATGG 1435 | ||| ||||| | ||||||||||| |||||||||||| || ||||| |||| || ||| Sbjct 1651 -G-AACCTTCAGAG-CCATGACAACAATGAGATCTATGAGAAGGCTGTTAAAA-TTCTGG 1706 Query 1436 AGACATATTGGGT-GTAGAAGAAGCTGACGAGACACA 1471 ||||||| ||| | | ||| |||| ||| |||||||| Sbjct 1707 AGACATACTGGCTTGAAGAGGAAGATGATGAGACACA 1743 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 57363908970 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5