BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55040.1
Length=2783
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474779 jgi|Araly1|474779|fgenesh2_kg.1__4733__AT1G55040.1 4167 0.0
> Ahg474779 jgi|Araly1|474779|fgenesh2_kg.1__4733__AT1G55040.1
Length=2658
Score = 4167 bits (2256), Expect = 0.0
Identities = 2541/2677 (95%), Gaps = 25/2677 (1%)
Strand=Plus/Plus
Query 1 GGCTGCTTCTGCAACCTAAAAATGGCTGCTTCAATCTCTCTTCTTCTCATCAAACGCATC 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1 GGCTGCTTCTGCAACCTAAAAATGGCTTCTTCAATCTCTCTTCTTCTCATCAAACGCATC 60
Query 61 TCTCACTTGCACATAAACCCTAAAAGCCACCGACTTTTTCAACCATTTCTCACTAAATCA 120
|||||||| ||||||||||||||||||| ||||||||| |||| ||||||||| ||||||
Sbjct 61 TCTCACTTCCACATAAACCCTAAAAGCCGCCGACTTTTCCAACAATTTCTCACAAAATCA 120
Query 121 CTCTCTACTTCTCCACAAAGCAACACTGAATCAACCCATGAACCTAATCACAAACCCTCT 180
||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||||||||
Sbjct 121 CTCTCTACTTCTCCACAAAGCAACACTGATTCAACCCTTGAACCTAACCACAAACCCTCT 180
Query 181 TCTCTATCTTCTCGTCTTAGCTTCGTTTTCGATCAAATCGATGCTATTGAGAAACGTCAC 240
||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 181 TCTCTCTCTTCTCGTCTTAGCTTCGTATTCGATCAAATTGATGCTATTGAGAAACGTCAC 240
Query 241 TCTGAGAAAGACGAAACCCTTGAGCGTATTCGTGCTTGGCGTCAATCTAAACAGACGCAT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 241 TCTGAGAAAGACGAAACCCTTGAGCGTATTCGTGCTTGGCGTCAATCTAAACAAACCCAT 300
Query 301 CAGTTAAAAACTCC-TCCTTCTGCT-C-C-ACAACAAGATCCGGATCTTAGAGAAGTCGA 356
|||| |||||| || | |||||||| | | ||||||||||||||||| ||||||||| ||
Sbjct 301 CAGTCAAAAACACCAT-CTTCTGCTCCACAACAACAAGATCCGGATCATAGAGAAGTTGA 359
Query 357 ATCCGTTGTGTCTAATGATAAATTGGATTCTTGTGTTGTGCTTGAGCCGATTCAGATTGA 416
||| || ||||||||||| |||||||||||||||||||| ||||| ||| |||| ||||
Sbjct 360 ATCTGTAGTGTCTAATGAGGAATTGGATTCTTGTGTTGTGGTTGAGTCGAGTCAGGTTGA 419
Query 417 TTCTGGTGAGTTGAGTAAGGAGAAAGGTGTTATTGAGTTGGTCCATCCATGGCCGGAGTG 476
|||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||
Sbjct 420 TTCTGGTGAGTTGAGTAAGGAGAAGGGTGTGGTTGAGTTGGTGCATCCATGGCCGGAGTG 479
Query 477 GATGGAGTTGATGGAGAGATTGGTGAAGCAGAATTACTTTGATCATAGGAGAGAAAGAGA 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 480 GATGGAGTTGATGGAGAGATTGGTGAAGCAGAATTACTTTGATCATAGGAGAGAAAGAGA 539
Query 537 TGATGATGATATGGTGAATAGTTTGGGGATTGATGTGTCTAGTGTTGGATTAGGTGAAGA 596
||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 540 TGATGATGAGATGGTGAATAGTTTGGGGATTGATGTGTCTAATGTTGGATTAGGTGAAGA 599
Query 597 TGAGAATGTTGGAGTTGCTTTGTTTCAGGATTTTAGAGCTGTTCAAAATGCTTGTAGCAA 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 600 AGAGAATGTTGGAGTTGCTTTGTTTCAGGATTTTAGAGCTGTTCAAAATGCTTGTATCAA 659
Query 657 TTTTGGTAAAGACCGTTTCGATATTCTAAGGTCATTGTCGAGAAATGACATTCAAATCCT 716
||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 TTTCGGAAAAGACCGGTTCGATATTCTAAGGTCATTGTCGAGAAATGACATTCAAATCCT 719
Query 717 AGTCGGTCATGGATGTCCAGCGACTGATAGAAAAGTGGTTTTCTCAGGAAAACTACTGAG 776
||| ||||||||||| || || ||||||||||| ||||||||||| ||||||||||||||
Sbjct 720 AGTGGGTCATGGATGCCCTGCAACTGATAGAAAGGTGGTTTTCTCTGGAAAACTACTGAG 779
Query 777 GAAGCGTGTTCATCTTGATGAAGGAGATGTCTGCAGTTCCTGCAGCTTGAGGAACTCATG 836
||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 GAAGCGTGTCCATCTCGATGAAGGAGATGTCTGCAGTTCCTGCAGCTTGAGGAACTCATG 839
Query 837 CGAAAAGGCATTTTTGTTGACAAACAAAGAGGATGAGGCTCGAACCATTGACCTTATGCG 896
||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 840 CGAAAAGGCGTTTTTGCTGACAAACAAAGAGGATGAGGCTCGAACCATTGACCTGATGCG 899
Query 897 CATTTTGTTCACCTATGGTTTTGACCCATTGAATGGA-ACAGTGGCCAACAAAAGTCTCC 955
|||||||||||||||||||||||| ||||||||| || |||||||||||||||| |||||
Sbjct 900 CATTTTGTTCACCTATGGTTTTGATCCATTGAAT-GATACAGTGGCCAACAAAAATCTCC 958
Query 956 TGAAGAAAAAGTCTGTTAAGTCTGTGGTGCGTAAACTGCTGCATGAGATTGTCAAGTTAA 1015
|||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 959 TGAAGAAAAAGTCTGTTAAGACTGTGGTGCGTAAACTGCTGCATGAGATTGTCAAATTAA 1018
Query 1016 GCGCTGTACCAATAGATCCTAATCTCACTCCACCAGTTATCAAAAGAGCGCCCCCTAAAG 1075
||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 1019 GCGCTGTACCAATAGATCCTAATCTTACTCCACCAATTATCAAGAGAGCGCCCCCTAAAG 1078
Query 1076 TCAAGCAGCCACCGCCAACTCCTAAACGACGTGTTGGCCGTGATGATGTTGAGATGAAGA 1135
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 1079 TCAAGCAGCCACCGCCACCTCCTAAACGACGTGTTGGCCGTGATGACGTTGAGATGAAGA 1138
Query 1136 AAGGAGATTGGCTATGCCCAAAGTGCGATTTCATGAACTTTGCAAAGAACACGATTTGCT 1195
||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1139 AAGGAGATTGGCTGTGCCCAAAGTGCGATTTCATGAACTTCGCAAAGAACACGATTTGCT 1198
Query 1196 TACAGTGTGATGCAAAGAGGCCAAAGAGACAGCTCCTTCCAGGAGAATGGGAATGCCCTG 1255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TACAGTGTGATGCAAAGAGGCCAAAGAGACAGCTCCTTCCAGGAGAATGGGAATGCCCTG 1258
Query 1256 AATGCAACTTCTTAAACTATAGAAGAAACATGGCATGTTTTCATTGTGATTGCAAGCGTC 1315
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1259 AATGCAACTTCTTAAACTATAGGAGAAACATGGCATGTTTTCATTGTGATTGCAAGCGTC 1318
Query 1316 CAGCTGATGCTATCCTAGAGAACAAACCACAAGAAACTTATCGCTTCACTGAAGCACAAA 1375
|||| ||||||||||||||||||||| || |||| ||| |||||||||||||||||||||
Sbjct 1319 CAGCGGATGCTATCCTAGAGAACAAAACAGAAGATACTCATCGCTTCACTGAAGCACAAA 1378
Query 1376 CAGACAGGGTTGTGAAACGGGATGATGTTTCCAATGCATGGAACTTTGATTTTGATGACG 1435
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CCGACAGGGTTGTGAAGCGGGATGATGTTTCCAATGCATGGAACTTTGATTTTGATGACG 1438
Query 1436 ATGAATCAGACGGAGCAGAAGTTGCTGCTTTTGAATATGCGGATTCCAGTAAAAAGAATG 1495
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1439 ATGAATCAGATGGAGCAGAAGTTGCTGCGTTTGAATATGCGGATTCCAGTAAAAAGAATG 1498
Query 1496 AAAACCTTCTCCGGGAGGGTTTGAGAGATCCTGAAGAAGAATTTGGTAATCTTCCTCCAG 1555
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 AAAACGTACTCCGGGAGGGTTTGAGAGATCCTGAAGAAGAATTTGGTAATCTTCCTCCAG 1558
Query 1556 GAGCCCGAGAAAGTTCTGAGTTTGGCAGAAGCAGAAGACCTGGAGTTGGGTTTGATGATT 1615
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 GAGCCCGAGAAAGTTCTGAGTTTGGCAGAAGCAGAAGACCTGGAGTTGGGTTTGATGATT 1618
Query 1616 TTGACGATGAAGATGACATTGATAGCTATGAAATAGACGAATCTAAAGAGAGAGATGTCC 1675
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1619 TTGACGATGAAGATGACATTGATAGCTATGAAATAGACGAATCTGGAGAGAGAGAGGTCC 1678
Query 1676 CAGTGGAAGGAGCTCGATCTTCTTTTGCTTCTGACGAGTTCTCAGAGGATGAAAAGTTTC 1735
||||||||||||| ||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 1679 CAGTGGAAGGAGCCCGACCTTCTTTTCCTTCTGACGAGTTCTCAGAGGATGAAAAGTTTC 1738
Query 1736 CAGAATCAAAGTCTGGTTTTAATGCACACAGAGGAGGAAGTTCAAACTTTCACAACAGT- 1794
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1739 TGGAATCAAAGGCTGGTTTTAATGCACACAGAGGAGGAAGTTCAAACCTTCACAACAGTA 1798
Query 1795 GGAAAGAAGCATGGAAACAGTAAGGGAGGTTTCTCTAGGGATGATGAGCTCGGTTTTAGT 1854
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1799 GGAA-GAAGCATGGAAACAGTAAGGGAGGTTTCTCTAGGGATGATGAGCTCGGTTTCAGT 1857
Query 1855 TCAGATGATGAGGTTTCCGCCAATCCCAGGTGGAAGTCAAGCCATGTGGCTTCGACCCAG 1914
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1858 TCAGATGATGAGGTTTCCGCCAATCCCAGGTGGAAATCAAGCCATGTTGCTTCGACCCAG 1917
Query 1915 AGAGGTCCACCTTCGAGAAAACTTACTTTTGGGTCAGACGAAGAATTTGGGCTCGATTCT 1974
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1918 AGAGGTCCACCTTCGAGAAAACTTACTTTTGGGTCGGACGAAGAATTTGGGCTCGATTCT 1977
Query 1975 GATATGGAGGATGATAGTCCCAGGTCCGGTTTGAGGCGTGGACAAAGAAACAACGGTGCG 2034
||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1978 GATCTGGAGGACGATAGTCCAAGGTCCGGTTTGAGGCGTGGACAAAGAAACAACGGTGCT 2037
Query 2035 AGAGGAGGGTTCAAGGGAAAACGAAGCTCCTATTCAGCTTCAGAATCTGATGATGACATG 2094
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2038 AGAGG-G--TTCAAGGGAAAACGAAGCTCCTATTCAGCTTCAGAATCTGATGATGACATG 2094
Query 2095 GATGATCAAGAGTACAGAGGGTCAAGTTTCTCTGGTAATAGATCGAGAGGAAGTAGAGGA 2154
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2095 GATGATCAAAAGTACAGAGGGTCAAGTTTCTCTGGTAATAGATCGAGAGGAAGCAGAGGA 2154
Query 2155 AGAATGAGAGGTGGAGGACGAGGTGGTTTCAATGATAATTTTGCCTCTGATAGCTACAGG 2214
||||||||||| |||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct 2155 AGAATGAGAGGCGGAGGACGGGGTGGTTTCGGTGATAATTTTGCCTCTGATAGCTACAGG 2214
Query 2215 GGATCAAATGGCTCCTCGGCTAATAGATCAAGAGGGAGAGGAGGAAGAATAGGAAGCAGA 2274
||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 2215 GGATCAAGTGGCTCCTCGGCTAATAGATCAAGAGGGAGAGGAGGAAGAACAGGAACCAGA 2274
Query 2275 AGGAGTAGTTTTGATAGTGACGATGAAGATTACAGAGGGTCAAGTTCCTCAGCTAGTAGA 2334
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2275 AGGAGTAGTTTTGATAGTGACGATGAAGATTACAGAGGGTCAAGTTCCTCAGCCAGTAGA 2334
Query 2335 TCAAGAGGTAACAGAGAAGATAGTGGCGGGGTTGGGGGAAGAATGGGAAGCAGAAGAGGC 2394
|||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 2335 TCAAGAGGGAACAGAGAAGATAGTGGCGGGTTTGGGGGAAGAATGGGAAGCAGAAGAGGC 2394
Query 2395 GGTTTTGATGATGAGTTTGATAGAAAGAGTAGCCGAGGACGCGGTTCAGGTAGTTTCAGG 2454
||||||||||| | |||||||||||| |||||||||||||||| |||||||||||||||
Sbjct 2395 GGTTTTGATGA-G--TTTGATAGAAAGGGTAGCCGAGGACGCGGCTCAGGTAGTTTCAGG 2451
Query 2455 GGATCTAACAgaggaggaagaggaggaggaggaggaggaAACCGGCATGGGCATAGTGAT 2514
||||| |||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 2452 GGATCAAACAGAGGAGGAAGAGGAGGAGGA--A--A-----CCGGCATGGGCATAGTGAT 2502
Query 2515 GGTAAAGACACAGACGTTGGTGATTTCAGAAACAGTCGAAGAGTTATCGAGAGATAGAGA 2574
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2503 GGTAAAGACACAGACGTTGGAGATTTCAGAAACAGTCGAAGAGTTATCGAGAGATAGAGA 2562
Query 2575 TGTAAACTGGTCTCATCAGATATTTACTTTATACTTTTATCCAGTATCCAATTGGCTATA 2634
||||||||| | |||||||||||| ||| ||||||| |||||||||||||||||||||||
Sbjct 2563 TGTAAACTGATATCATCAGATATT-ACTCTATACTTCTATCCAGTATCCAATTGGCTATA 2621
Query 2635 GTGCATTAGTTCAGTCATAATATCAATTTCTGTTATT 2671
||||||||||||| ||||||||||| |||||||||||
Sbjct 2622 GTGCATTAGTTCACTCATAATATCATTTTCTGTTATT 2658
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105014805465
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5