BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55050.1
Length=3022
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474781 jgi|Araly1|474781|fgenesh2_kg.1__4735__AT1G55050.2 2146 0.0
Ahg470983 jgi|Araly1|470983|fgenesh2_kg.1__937__AT1G09040.1 544 2e-153
> Ahg474781 jgi|Araly1|474781|fgenesh2_kg.1__4735__AT1G55050.2
Length=2935
Score = 2146 bits (1162), Expect = 0.0
Identities = 1533/1705 (90%), Gaps = 53/1705 (3%)
Strand=Plus/Plus
Query 1 AAGTGAtctctctctct-ttctctcCACAAAGAACCGAAACTTGTTCGGTCTTTCGTTGC 59
||||||||||||||| | || ||||||||||||||||||||||||| |||||||| |||
Sbjct 1 AAGTGATCTCTCTCTGTCTT-TCTCCACAAAGAACCGAAACTTGTTGGGTCTTTCATTG- 58
Query 60 CTCTCCTCACTCGGAGAAATCTCACTGCCAATGCAAAGCTGAAACATCTCTTTCAGACAG 119
||||||| ||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 59 ----CCTCACTAGGAGAAATCTCACTGCCAATGCAAAGCTGAAACCTCTCTTT----CAG 110
Query 120 TTCTTATGATGGAAGAAGAAAACAGTTCTATGGAAGAGTCTTGTGATGAAGAATTCGTTT 179
||||||| ||||| || |||| || | |||||||||| ||||||||||||||||| || |
Sbjct 111 TTCTTATAATGGATGAGGAAAGCAATCCTATGGAAGATTCTTGTGATGAAGAATTTGTCT 170
Query 180 GTGGAGATCCAAAAGTTGATATTCGTGTTGGAGATGAGTATCAGGTTGAGATACCTCCTA 239
| |||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 171 GCGGAGATCCGAAAGTTGATGTTCGTGTTGGAGATGAATATCAGGTTGAGATACCTCCTA 230
Query 240 TGATGTCTGAATCCCAACGTGCAGAGCTTCTTTTGAATCCTCTGGAATTTGATTCCTCTT 299
|||| ||||||||||||||||||| ||||||||||||||||||||| | |||||||||||
Sbjct 231 TGATCTCTGAATCCCAACGTGCAGCGCTTCTTTTGAATCCTCTGGACTCTGATTCCTCTT 290
Query 300 GTTCTTTTGCTGTGGGACTACCTGTTGAAGTAATGTGGATCGAGACAAAATGTAGAGATG 359
|||| |||||||||||||||||||| |||||||||||||| || || ||||||||||||
Sbjct 291 GTTCCTTTGCTGTGGGACTACCTGTCGAAGTAATGTGGATAGACACCAAATGTAGAGATA 350
Query 360 GAGATGGACTTGGAAGTGATAACATTGACATGAACGAATCTCTCAAATCTCTTAAAAGAA 419
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||
Sbjct 351 GAGATGGACTTGGAAGTGATAACATCGACATGAACGAATCTCTCAAATCACTTAAAACAA 410
Query 420 AAAGAAGTCGCAGAGGTGGGAGTGACGGGAACTCGGGTTCTAAGCGACGTATGAATCTTG 479
||||||| |||||||||||||||||||||||| |||| |||||| || |||||||||||
Sbjct 411 AAAGAAGCCGCAGAGGTGGGAGTGACGGGAACCCGGGAGCTAAGCAACATATGAATCTTG 470
Query 480 AAGCTGTGCCTGAGAAATCGTCCAGTTCTTGGGAAGATTTGGAAGTAGATGGGTTTGTTC 539
||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 471 AAGTTGTGCCTGAGAAATCATCCAGTTCTTGGGAAGATTTGGAAGTAGATGGATTTGTTC 530
Query 540 TTGGACTGTATACATTTGGGAAGAACTTTGCTCAGGTGCAGAAGTTGTTAGAGAGCAAAG 599
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 531 TTGGGCTGTATACATTTGGGAAGAACTTTGCTCAGGTGCAGAAGTTGTTAGAGAGCAAAG 590
Query 600 CAACAGGAGAGATACTTTTGTTTTACTATGGAAAGTTTTATGGTTCTGCTAAATACAAAA 659
||||||||| ||||||||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 591 AAACAGGAGATATACTTTTGTTTTACTACGGAAAGTTTTACGAATCTGCTAAATACAAAA 650
Query 660 CTTGGTCTAATTATCTTAAGAAGCGGAGTACGAGATGTATACAAGGGAAGAAGCTCTATT 719
||||||||||| ||||||||||||||| | |||||| ||||||||||||||||||||||
Sbjct 651 TTTGGTCTAATTCTCTTAAGAAGCGGAGCAGGAGATGCATACAAGGGAAGAAGCTCTATT 710
Query 720 CAGATTGGAGGCTACAGCTGTTGTTGTCCCGTTTAATTCGCAGCATTACCGATGAA-TCG 778
||||||||||||||||| |||||||||||||||||||||||| |||| |||||||| | |
Sbjct 711 CAGATTGGAGGCTACAGTTGTTGTTGTCCCGTTTAATTCGCAACATTCCCGATGAACT-G 769
Query 779 AAAGAACAGAAGCTAGTGGATGTCTCAAAGTCATTTGCTGAAGGGAAGAAATCTCTGGAG 838
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 770 AAAGAACAGAAGCTTGTGGATGTCTCAAAGTCATTTGCTGAAGGGAAGAAGTCTCTGGAG 829
Query 839 GAATACATCAACGCGGTTAAGAAACTAGTGGGTCTTCGGTGTCTTGTAGAGGCTGTAGCA 898
||||||||||||||||||||| ||||||||||||| |||| |||| ||||||||||||||
Sbjct 830 GAATACATCAACGCGGTTAAGGAACTAGTGGGTCTCCGGTATCTTTTAGAGGCTGTAGCA 889
Query 899 ATCGGTAAAGATAAGGAAGATCTGACAGTCCTTACAACAAAACCCGTAGATGTAGAACAA 958
|| ||||||||||||||||||||||||||||| |||| | |||||| | ||| | |||||
Sbjct 890 ATTGGTAAAGATAAGGAAGATCTGACAGTCCTCACAATAGAACCCGAAAATGCAAAACAA 949
Query 959 TGGTTTAGAGTTTCTTCTGCGGTACCTGCTGGTTTAGGGGAATACAATTCACTCACAGTT 1018
||||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||
Sbjct 950 TGGTTTACAGTTTCTTCTGCGGTTCCTGCTGGTTTAGGGGAATACAGTTCACTCACAGTT 1009
Query 1019 GAAGGTATAATCGAAAAATTGTCTGGTGGTTCCCGTGTGAGCAAAGCTCGTTGCAATGAT 1078
||||||||||||||||||||| ||||| |||||||| ||| |||| ||||| |||||||
Sbjct 1010 GAAGGTATAATCGAAAAATTGACTGGTTGTTCCCGTCTGATAAAAGGTCGTTACAATGAT 1069
Query 1079 ATCTTCTGGGATGCTGTATGGCCGCGTTTGCTACATAGGGGTTGGCGTTCTGAGCTGCCA 1138
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 1070 ATCTTCTGGGACGCTGTATGGCCGCGTTTGCTACATAGGGGGTGGCGTTCTGAGCAGCCA 1129
Query 1139 AAGGACC-AAGGTTACATCAAGTCTAAAGAACACATTGTCTTCCTCGTCCCTGGGGTAAA 1197
||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1130 AAGGACCGAAG-TTACATCAAGTCTAAAGACCACATTGTCTTCCTCGTCCCTGGGGTAAA 1188
Query 1198 GAAGTTTTCAAGAAAGAAACTTGTGAAACGTGATCATTACTTTGATTCTATCAGTGACAT 1257
||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1189 GAAGTTTTCAAGACGGAAACTTGTGAAACATGATCATTACTTTGATTCTATCAGTGACAT 1248
Query 1258 TCTCAAAAAGGTTGTTTCAGAGCCTGAGCTTCTTGAGGAGACAGCaga-ag-a-ag---- 1310
|||||||||||||||||| ||||||||||||||||||||||||||||| | | ||
Sbjct 1249 TCTCAAAAAGGTTGTTTCTGAGCCTGAGCTTCTTGAGGAGACAGCAGAGATCAGAGCTCC 1308
Query 1311 --a---aag-ag--aagagaaCACTTACAACCAATCAAAACAGGAGAAACACTGTTACCT 1362
| || | |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1309 TGATGGAATCATCCAAGAGAACACTTGCAACCAATCAAAACAGGAGAAACACTGTTACCT 1368
Query 1363 CAGGTCTCCAAGCTCTTCTTCTACTCATATGAAGTTCACTGTTGTGGACACTAGTCGTTT 1422
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 GAGGTCTCCAAACTCTTCTTCTACTCATATGAAGTTCACTGTTGTGGACACTAGTCGTTT 1428
Query 1423 TGCTTCAAGAGGAAAGTTGTACGAATTTCGGGAGTTGAGGATTCCAA-----G--T-T-T 1473
|||||| ||||||| |||| | ||| ||||||||||||||||||| | | | |
Sbjct 1429 GGCTTCAGGAGGAAATTTGTTCAAATGCCGGGAGTTGAGGATTCCAAATCCAGAATATCT 1488
Query 1474 AGCTTCTCAATCAAAGGCTTGTCGAGGGGATAACAACTCTTCTGTGGAAAGATTC-AAGT 1532
|||||||||||| | ||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 1489 AGCTTCTCAATCGATGGCTTGTCGAGGGGATAACAATTCTTCTGTGGAAAGATTCCAAAC 1548
Query 1533 T-TGC--T-G-ATG-A-AC--G--TAAGTGTAAAAGGAAGCAAAAGATGGAAGTGGTGGA 1581
||| | | | | | || | |||||| ||||| || ||||||| || ||||||
Sbjct 1549 AATGCCGTTGGAAGTACACAAGCGTAAGTGGGAAAGGCCGCGAAAGATGAAACAGGTGGA 1608
Query 1582 TGAACCGATGACATTCTTGATTCTGGATACAAGTGTGGA-CAAAGGTGGGCATACATCTG 1640
||||||||||| |||| |||||||||||||||||||||| ||| ||||||||| |||| |
Sbjct 1609 TGAACCGATGAAATTCATGATTCTGGATACAAGTGTGGAGCAA-GGTGGGCATTCATCCG 1667
Query 1641 GGATAAGAAGACGGAGACATTTGCC 1665
|||||||||||||||||||||||||
Sbjct 1668 GGATAAGAAGACGGAGACATTTGCC 1692
Score = 859 bits (465), Expect = 0.0
Identities = 642/725 (89%), Gaps = 21/725 (3%)
Strand=Plus/Plus
Query 2172 ATGAACCAATTTCACTAGCACAACAACAAGAACCAAATGGGTTATATTCATCAAAAGAAC 2231
|||||| || ||||| |||||||||| |||||||||||||||||| | ||||| || |
Sbjct 2124 ATGAACTAAGTTCACCAGCACAACAAAAAGAACCAAATGGGTTAT-GT--TCAAAGGACC 2180
Query 2232 AAGGAGCTTTTCATGAACACAGTTCAACAGAACAACAACAAGACGAATCAAATCGGTTGT 2291
|||||| | | ||||||| ||||||| ||||||||||||||||||||||||||||||||
Sbjct 2181 AAGGAGGTCTGCATGAACTCAGTTCATCAGAACAACAACAAGACGAATCAAATCGGTTGG 2240
Query 2292 GTTTGGACAAAATATGCTCTTCCAAGGATCTGGGAACTGCTCAAAAAGAAGAGCAACCGA 2351
|||| ||||||| |||||||||||||||||| | |||||| |||||| ||||||||||||
Sbjct 2241 GTTTAGACAAAAAATGCTCTTCCAAGGATCTTGAAACTGCCCAAAAACAAGAGCAACCGA 2300
Query 2352 TTCAGTTGCCTCCTAAGTCAGCCTCAGACAAGAATTCTCCGTCCAGAGATCATGGAACTA 2411
||||||||||||| || | | ||||||||||||| |||| |||||||||||||
Sbjct 2301 TTCAGTTGCCTCCCAA---A-----A-ACAAGAATTCTCCATCCACTGATCATGGAACTA 2351
Query 2412 CTGAAGAACGTGCATCATTAGAACAACAAGAAGAAGAGCATAAACAACAGGCCAACACGG 2471
|| |||||||||||||||||||||||||||||||||||||||| |||||| || |||| |
Sbjct 2352 CTCAAGAACGTGCATCATTAGAACAACAAGAAGAAGAGCATAACCAACAGACCGACACAG 2411
Query 2472 ACATTCCAAGAAGACAAAGCACAAGAAAGCGGCCGTTGACTACTCGTGCTCTGGAAGCTC 2531
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2412 ACATTCCAAGAAGACAAAGCACAAGAAAGCGGCCATTGACTACTCGTGCTCTGGAAGCTC 2471
Query 2532 TAGAATCGGACTTTTTTACACCAAAAAGCAAGAAAACTACTACATCTAAACCGAGAAACC 2591
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 2472 TAGAATCGGGCTTTTTTACACCAAAAAGCATGAAAACTACTACATCTAAACCGAGAAAAC 2531
Query 2592 GCGAACGTTCTGCAAGGATCAAGCACTCAGCCAATGCGAATAACAAAACTCCAGGCGAGT 2651
|| |||| ||||||| |||||||| ||||||||||||| ||||||||||||| ||||||
Sbjct 2532 GCAAACGGTCTGCAAATATCAAGCATTCAGCCAATGCGAGTAACAAAACTCCACGCGAGT 2591
Query 2652 CAGACAATAGTTTTCATGTAAAGGAGGCGATAACAAGTAAACCG-TC-A---G-ACCAAA 2705
|||||||| | | || ||||||||| |||| ||||| ||||||| | | | ||||||
Sbjct 2592 CAGACAATGGATATCTTGTAAAGGAAGCGACAACAAATAAACCGCTGGACCTGGACCAAA 2651
Query 2706 TAAAGGATTCCGAACCGAGCTTTCTTGTGGATAAAGTAACGGTGACAAGTAGTAAGCATG 2765
|||||||||| ||||| |||||||||||||||||||||||| ||||| | ||||||||
Sbjct 2652 TAAAGGATTCTGAACCAAGCTTTCTTGTGGATAAAGTAACGACGACAA--A-TAAGCATG 2708
Query 2766 TGGAACAAATAAAGGATTCGGAGAAGGTGACTACCGAGTTCCCTAAACTTCCTCCAATTG 2825
||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 2709 TGGAAGAAATAGAGGATTCGAAGAAGGTGACTACCGAGTTCCCTAAACTTCCTCCAATTG 2768
Query 2826 TTTTGAAACTTCCCTTTAGGCGTGGCTCAAGAAGCAATGAAGACTGAAGTCTGAATCATT 2885
|||||||||||||||||| | ||| || |||| || |||| ||||||||||||||||||
Sbjct 2769 TTTTGAAACTTCCCTTTAAGTGTGACTGAAGATGCGGTGAATACTGAAGTCTGAATCATT 2828
Query 2886 TTTTG 2890
|||||
Sbjct 2829 TTTTG 2833
Score = 324 bits (175), Expect = 3e-87
Identities = 251/286 (88%), Gaps = 11/286 (4%)
Strand=Plus/Plus
Query 1667 AAAGAGGCATTTGGTGAATCATCACAGAACCAATCTGGCACTAGTAAAGATGTGAACTGC 1726
|||||||||||||||||||||||||||||||||||| ||| || ||||| |||||| ||
Sbjct 1733 AAAGAGGCATTTGGTGAATCATCACAGAACCAATCTCGCAGTAATAAAGGTGTGAAGGGC 1792
Query 1727 GAGTATCTTAAGGGGACTGATCCTGGTGTAGAGGAAGAGACTTTGGAGAATGTCCAACAA 1786
|| ||| || |||||||||| ||||| ||| ||| ||||||||||||||||||||||||
Sbjct 1793 AAGCATCCTATGGGGACTGATTCTGGTCTAGGGGAGGAGACTTTGGAGAATGTCCAACAA 1852
Query 1787 GGTCGGTCAAAGAAGATTAAGCAGAAGT-TTGCCCTATTATCAGAATCTAATAAACGTCA 1845
||||||||||||||||| ||||||| || || ||| | |||||||||||||||| | |||
Sbjct 1853 GGTCGGTCAAAGAAGATCAAGCAGAGGTATT-CCCGAATATCAGAATCTAATAACCATCA 1911
Query 1846 TTTGGTTGGTTCTCTTCCCTTGCGAAAACGTAGGCGGCTCAGTACTTGTGTAAGGAAAGA 1905
|| |||| | | | |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1912 TTCGGTT----C-C--C--TTGCCAAAACGTAGGCGGCTCAGTACTTGTGTAAGGAAAGA 1962
Query 1906 TAGAAAACGTTCTGGTGAAAGTTCAGTGTTGAAGCCACCTCCATTA 1951
|| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1963 TATAAAACGTTCTGGTGAAAGTTCAGTGTTGAAGCCACCTGCATTA 2008
> Ahg470983 jgi|Araly1|470983|fgenesh2_kg.1__937__AT1G09040.1
Length=3057
Score = 544 bits (294), Expect = 2e-153
Identities = 927/1220 (76%), Gaps = 94/1220 (8%)
Strand=Plus/Plus
Query 134 GAAGAAAACAG-T-TCTATGGAAGAGTCTTGTGATGAAGAATTCGTTTGTGGAGATCCAA 191
|||| |||||| | | ||| ||||| || | |||||| ||||| | || |||||||||
Sbjct 201 GAAG-AAACAGCTGT-TATCGAAGATTCATATGATGATGAATTTGCCTGCGGAGATCCAC 258
Query 192 AAGTTGATATTCGTGTTGGAGATGAGTATCAGGTTGAGATACCTCCTATGATGTCTGAAT 251
||||||| ||||||||||||||| | ||| || ||||| |||||||||||||||| ||
Sbjct 259 AAGTTGAGCCTCGTGTTGGAGATGAATTTCAAGTCGAGATTCCTCCTATGATGTCTGCAT 318
Query 252 CCCAA-CGTGCAGAGCTTCTTTTGAATCCTCTGGAATT---TGATTCCTCTTGTTCTTTT 307
|||| ||||| | | |||||| || |||| | | || |||||| || | |||||||
Sbjct 319 -CCAAGCGTGCTGTGTTTCTTTCGACTCCTGTTGCTTTGGATGATTCTTCGTATTCTTTT 377
Query 308 GCT-GTGGGACTACCTGTTGAAGTAATGTGGATCGAGACAAAATGTAG-AGATGGAGATG 365
|| || |||||||||||| |||| |||||||| |||| ||| ||| ||| ||| | |
Sbjct 378 -CTCGTTGGACTACCTGTTCAAGTGATGTGGAT--AGAC-AAACATAGAAGA-GGACAAG 432
Query 366 GACTTGGAAG-TGATAACATTGACATGAACGAATCTCTCAAATCTCTTAA-A---AGAAA 420
|| ||| || |||||| ||||||||||| ||||| | |||||| |||| | | |||
Sbjct 433 GAAATGG-AGATGATAATGTTGACATGAACCAATCTTTGAAATCT-TTAAGAGCCAAAAA 490
Query 421 AA---GAAG-TC-G-------CAGAGGTGGGAGTGACGGGAACTCGGGTTCTAAG---CG 465
|| | | || | |||||| ||||||| ||| |||| | ||| |
Sbjct 491 AAGCCGTTGCTCTGCCAATATCAGAGGAAAGAGTGACAAGAATTCGGCCCCCAAGAATCA 550
Query 466 ACGTA-TGAATCTTGAAGCTGTGCCTGAGAAATCGTCCAGTTCTTGGGAAGATTTGGAAG 524
| | | |||||||||| ||||| |||| || | | |||||||| |||||||||||||| |
Sbjct 551 AAG-ATTGAATCTTGAGGCTGTTCCTGCGATACCATCCAGTTCCTGGGAAGATTTGGAGG 609
Query 525 TAGATGGGTTTGTTCTTGGACTGTATACATTTGGGAAGAACTTTGCTCAGGTGCAGAAGT 584
| | | | ||||||||||| |||||||||||||||||||||||| |||||||| |||| |
Sbjct 610 TGGCTAGCTTTGTTCTTGGTCTGTATACATTTGGGAAGAACTTTACTCAGGTGAAGAATT 669
Query 585 TGTTAGAGAGCAAAGCAACAGGAGAGATACT-TTTGTTTTACTATGGAAAGTTTTATGGT 643
| | |||| ||||| || ||||||| || | ||| ||||||||||| ||||| || |
Sbjct 670 TCATGGAGAACAAAGGAATAGGAGAGGTAATGTTT-TTTTACTATGGGAAGTTCTACAAT 728
Query 644 TCTGCTAAA-TACAAAACTTGGTCT-AATTATCTTAAGAAGCGGAGTA-C-GAGATGTAT 699
||||| ||| ||| | | ||||||| || | | |||||||| | | | || |||| |
Sbjct 729 TCTGC-AAAGTACCACAGTTGGTCTGAA-TCCCGCAAGAAGCGCA--ACCGGAAATGTGT 784
Query 700 ACAAGGGAAG-AAGCTCTATTCAGATTGGAGGCTACAGCTGTTGTTGTCCCGTTTAATTC 758
| | ||||| ||||||||||||| |||||||| ||| | |||||| ||||||| || |
Sbjct 785 A-TATGGAAGAAAGCTCTATTCAGGTTGGAGGCAACAACAGTTGTTAACCCGTTTGATGC 843
Query 759 GCAGC-ATTACC-GATGAATCGAAAG-AACAGAAGCTAGTGGATGTCTCAAAGTCATTTG 815
| | ||| || |||||| | || |||||| ||| ||||||||||||||||||||||
Sbjct 844 -CTTCTATT-CCTGATGAA-CCTCAGAAACAGATGCTCGTGGATGTCTCAAAGTCATTTG 900
Query 816 CTGAAGGGAAGAA-ATCTCTGGAGGAATACATCAA-CGCGGTTAAGAAACTAGTGGGTCT 873
||||||| || | | |||||||| ||||| | || ||| || ||||| || ||||||||
Sbjct 901 CTGAAGGTAATATCA-CTCTGGAGAAATACGT-AAGCGCAGTGAAGAATCTTGTGGGTCT 958
Query 874 TC-GG-TGTCTTGTAGAGGCTGTAGCAATCGGTAAAGATAAGGAAGATCTGACAGT-CCT 930
| || | ||| ||||| ||||| || || |||||||| || |||||||| || || |||
Sbjct 959 -CAGGCT-TCTGGTAGACGCTGTGGCGATTGGTAAAGAAAAAGAAGATCTCACGGTTCCT 1016
Query 931 TACAACAAAACCCGTAGATGTAG-AA-CAATGGTTTAGAGTTTCTTCTG--CGGTACCT- 985
||| || ||| | || | | || | |||||| | |||||||| | | | |
Sbjct 1017 -ACATCAGCACCAAT-GAAG-ACCAAACCATGGTTCACTGTTTCTTCAAAACCTT-CTTC 1072
Query 986 GCT---GGTT-TAGGGGAATACAATTCACTCACAGTT-GAAGGTATAATCGAAA--AATT 1038
| | || ||||||| ||||||||||||||| | | || ||||| ||| ||||
Sbjct 1073 GGTCCCGGGAGTAGGGGATTACAATTCACTCACA-TCCGCTGGCATAAT--AAATCAATT 1129
Query 1039 GTCTGG-TGGTTCCCGTGTGAGCAAAGCTCGTTGCAATGATATCTTCTGGGATGCTGTAT 1097
|||| || ||| ||| |||||||||| |||||||||||||| |||||||| ||| |||
Sbjct 1130 AACTGGCTG-TTCACGTCTGAGCAAAGCCCGTTGCAATGATATATTCTGGGACGCTATAT 1188
Query 1098 GGCCGCGTTTGCTA-CATAGGGGTTGGCGTTCTGAGCTGCCAAAGGACCAAGGTTACATC 1156
|||||||||||||| | || || |||||||| ||| ||| |||||| || || ||
Sbjct 1189 GGCCGCGTTTGCTAGCC-AGAGGATGGCGTTCACAGCAGCCCGAGGACCGTGGCTATTTC 1247
Query 1157 AAGTCTAAAGAACACATTGTCTTCCTCGTCCCTGGGGT-AAAGAAGTTTTCAAGAAAGAA 1215
|| ||||| || | ||||| ||| | |||||||| || ||| |||||||||||| ||||
Sbjct 1248 AAATCTAAGGATTATATTGTTTTCATTGTCCCTGGCGTGAAA-AAGTTTTCAAGACAGAA 1306
Query 1216 ACTTGTGAAACGTGATCATTACTTTGATTCTATCAGTGACATTCTCAA-AAAGGTTGTTT 1274
||||| ||| | || ||||||||||||||| ||||||| ||||| || ||||||||| |
Sbjct 1307 GCTTGTCAAAGGCGAACATTACTTTGATTCTGTCAGTGATATTCT-AACAAAGGTTGTGT 1365
Query 1275 CAGAGCCTGAGCTTCTTGAG 1294
| |||||||| |||||||||
Sbjct 1366 CGGAGCCTGAACTTCTTGAG 1385
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114118374020
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5