BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G55070.1

Length=1182
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924005 jgi|Araly1|924005|scaffold_105286.1                        121    1e-26


> Ahg924005 jgi|Araly1|924005|scaffold_105286.1
Length=301

 Score =  121 bits (65),  Expect = 1e-26
 Identities = 121/145 (83%), Gaps = 15/145 (10%)
 Strand=Plus/Plus

Query  677  GACATTATTATACCCACCGTTATCATAAGGGGATATGCATCAAAGGTGTTTTGTATTA--  734
            |||||||||||   |||||||||| ||||||||||||| |||| ||||||||||||||  
Sbjct  124  GACATTATTATGTTCACCGTTATCTTAAGGGGATATGCGTCAATGGTGTTTTGTATTATG  183

Query  735  -TGCAGCAACCTCTATGAAACCTATGTTGGGACCTATGATCGTTTGCTTTGACGTTAGGT  793
             |||||||| |||||||    | |       |||| ||||||||||||||||||||||||
Sbjct  184  CTGCAGCAAGCTCTATG----C-A-------ACCTGTGATCGTTTGCTTTGACGTTAGGT  231

Query  794  CTGAGAAATTTGGTTTTATTACTTG  818
            |||||||||||| ||||||||||||
Sbjct  232  CTGAGAAATTTGATTTTATTACTTG  256



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 44108214969


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5