BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55080.1
Length=925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474562 jgi|Araly1|474562|fgenesh2_kg.1__4516__AT1G55080.1 1033 0.0
> Ahg474562 jgi|Araly1|474562|fgenesh2_kg.1__4516__AT1G55080.1
Length=818
Score = 1033 bits (559), Expect = 0.0
Identities = 656/699 (94%), Gaps = 21/699 (3%)
Strand=Plus/Plus
Query 225 caacaacagtttcatcttcaacaacaacaacagacgcagcagcaacaacaacaattccag 284
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 136 CAACAACAGTTTCATCTT---CAACAACAACAGACGCAGCAGCAACAACAACAATCCCAG 192
Query 285 ccacaacaacaacaagagatgcaacaatat-cagcaattccaacaacagcaacacttcat 343
| | ||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 193 -C-C-ACAACAACAAGAGATGCAACAAT-TCCAGCAATTCCAACAACAGCAACACTTCAT 248
Query 344 ccaacaacagcaattccaacaacaacaacGGTTGTTACAATCTCCTCCTCTTCAGCCACA 403
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 249 TCAACAACAGCAATTCCAACAACAACAACGGTTGTTACAATCTCCTCCTCTTCAGACACA 308
Query 404 GTCGTTACAATCACCTCCGCCGCAACAGACGATGGTTCACACGCCTCAATCTATGATGCA 463
|||||| |||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 309 GTCGTTGCAATCACCTCCGCCGCAACAGACGGTGGTTCATACGCCTCAATCTATGATGCA 368
Query 464 TACACCGCAGCAACAACAACAGTTGGTTCAAACTCCGGTGCAGACTCCTCAACAGCATCA 523
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 369 TACACCGCAGCAACAACAACAGTTGGTTCAAACTCCGGTGCAGACTCCGCAACAGCATCA 428
Query 524 GTCTTTAGCTTCTCATTTCCATCTCTATCCGATGGTGGAGAAATTAGCTGATGTGATCGA 583
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 429 GTCTTTAGCTTCTCATTTCCATCTCTATCCGATGGTGGAGAAATTAGCCGATGTGATCGA 488
Query 584 AAATGGAACACGAGATCAGAATTCTGACGCCCTGGTGAATGAATTGAATAGCCATTTCGA 643
||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||
Sbjct 489 AAATGGAACACGAGATCAGAATTCTGATGCACTGGTGACTGAATTGAATAGCCATTTCGA 548
Query 644 CAAGTGTCAACAGTTGCTGAATTCGATTTCAGGATCACTAGGATCTAAAACTATGACTGT 703
||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 549 TAAGTGTCAACAGTTGTTAAATTCGATTTCAGGATCACTAGGATCTAAAACTATGACTGT 608
Query 704 TGATGGCCAAAAGAGAAATGTTGAAGAAAGTGAGCAATTGCTTCAACAGAGAAGGGATTT 763
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 609 TGATGGCCAAAAGAGAAATGTTGAAGAAAGTGAGCAATTGCTTCAACAAAGAAGGGATTT 668
Query 764 GATTGTGGAGTATAGGAAATCTATTGAAGAGATTGTGACA-ATGGAGCATTAGTTTCTCA 822
|||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| |
Sbjct 669 GATTGTGGAGTATAGGAAATCTATTGAAGAGATTGTGA-AGATGGAGCCTTAGTTTCTAA 727
Query 823 TAT-TTT-GATTCAGCAACTGTTT-AGCTACTTAAGACCAATAATTGTTATCAATAAACC 879
|| ||| |||||||||| ||||| |||||||| |||||||||||||||||||| |
Sbjct 728 GATGTTTTGATTCAGCAATTGTTTTAGCTACTTGGGACCAATAATTGTTATCAAT---C- 783
Query 880 AATCTTGATTCACATAATAAAGAGAATGTGGTTTTCTTC 918
| | |||||||||||||| ||||||||||||||||||
Sbjct 784 --T-T-GATTCACATAATAAGGAGAATGTGGTTTTCTTC 818
Score = 257 bits (139), Expect = 8e-68
Identities = 232/274 (85%), Gaps = 18/274 (7%)
Strand=Plus/Plus
Query 69 GAAGGAGAAAAAATGGATCAATTCTCAGGAGGAGGAGGTAATTGGTCGATGATCCCAAAC 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 16 GAAGGAGAAAAAATGGATCAATTCTCAGGAGGAGGAGGTAATTGGTCGATGATCCCAAAC 75
Query 129 GTGCAGGCGCAAGGTAACTTCGGTACACCGACGAATCATGACCAGCAACTATTCCTCCAG 188
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 76 GTGCAGGCGCAGGGTAACTTCGGTACACCGACCAATCATGACCAGCAACTATTCCTCCAG 135
Query 189 caacaacaattacaacaacaacaacaaca-ac--a--a-caacaacaacagtttcatctt 242
|||||||| || || | ||||||||||| || | | ||||||||||| | || |
Sbjct 136 CAACAACAGTTTCATCTTCAACAACAACAGACGCAGCAGCAACAACAACAATCCCAGC-- 193
Query 243 caacaacaacaacagacgcagcagcaacaacaacaattccagccacaacaacaacaagag 302
|| ||||||||| ||| ||| | ||| || |||||||| |||||| |||||
Sbjct 194 CA-CAACAACAAGAGATGCA--A-CAATTCCAGCAATTCCA---ACAACAGCAACACTTC 246
Query 303 atgcaacaatatcagcaattccaacaacagcaac 336
|| |||||| ||||||||||||||||| ||||
Sbjct 247 ATTCAACAA---CAGCAATTCCAACAACAACAAC 277
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34310625300
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5