BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G55090.1 Length=2762 Score E Sequences producing significant alignments: (Bits) Value Ahg474563 jgi|Araly1|474563|fgenesh2_kg.1__4517__AT1G55090.1 3657 0.0 Ahg925505 jgi|Araly1|925505|scaffold_201066.1 124 3e-27 Ahg907875 jgi|Araly1|907875|Al_scaffold_0002_956 124 3e-27 Ahg475601 jgi|Araly1|475601|fgenesh2_kg.2__731__ATCG00480.1 113 6e-24 > Ahg474563 jgi|Araly1|474563|fgenesh2_kg.1__4517__AT1G55090.1 Length=2419 Score = 3657 bits (1980), Expect = 0.0 Identities = 2190/2291 (96%), Gaps = 15/2291 (1%) Strand=Plus/Plus Query 173 TTTTCAATTTTCACGATCTCCGAATTTCACGACTTTGATAC-T-TGGTTTCTT-TGCACA 229 |||||||||||||||||||| || ||||||||||||||| | | ||| ||||| | |||| Sbjct 138 TTTTCAATTTTCACGATCTCTGAGTTTCACGACTTTGATTCTTCTGGGTTCTTCT-CACA 196 Query 230 TTCACGCGACGAAGATGAGGCTGTTGAAGGTTGCTACGTGTAACTTGAACCAATGGGCCA 289 |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 197 TTCA--CGACGAAGATGAGGCTGTTGAAGGTCGCTACGTGTAACTTGAACCAATGGGCCA 254 Query 290 TGGATTTCGAGAGCAACATGAAGAACATCAAGGCTTCGATCGCTGAGGCAAAGGCTGCTG 349 |||| |||||||||||||||||||| |||||| |||| |||||||||||||| || || | Sbjct 255 TGGAATTCGAGAGCAACATGAAGAATATCAAGACTTCCATCGCTGAGGCAAAAGCCGCCG 314 Query 350 GTGCTGTTATCAGGCTTGGACCCGAGCTCGAGGTCACTGGCTATGGTTGCGAGGATCACT 409 ||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| Sbjct 315 GTGCTGTCATCAGGCTTGGACCTGAGCTCGAGGTCACTGGCTATGGCTGCGAGGATCACT 374 Query 410 TCTTGGAACTCGACACTGTCACTCATGCGTGGGAGTGTTTGAAGGAATTGCTGCTTGGTG 469 ||||||| |||||||| ||||||||| |||||||||||||||||||||||||| |||||| Sbjct 375 TCTTGGAGCTCGACACCGTCACTCATTCGTGGGAGTGTTTGAAGGAATTGCTGGTTGGTG 434 Query 470 ATTGGACGGAT-GATATTTTGTGCAGCATAGGAATGCCTGTGATTAAAGGAGCAGAGCGT 528 ||||||||||| || || || |||||||||||||||||||| ||||||||||| ||||| Sbjct 435 ATTGGACGGATGGA-ATATTATGCAGCATAGGAATGCCTGTTATTAAAGGAGCTGAGCGG 493 Query 529 TATAACTGCCAGGTTCTCTGTATGAACAGAAGAATCATCATGATTCGACCGAAAATGTGG 588 ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 494 TATAATTGTCAGGTTCTCTGTATGAACAGAAGAATCATCATGATTCGACCGAAAATGTGG 553 Query 589 CTCGCAAACGATGGAAACTATAGGGAGCTACGGTGGTTCACAGCTTGGAAGCAGAGAGAA 648 || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 554 CTTGCAAACGATGGAAACTATAGGGAGCTACGGTGGTTCACGGCTTGGAAGCAGAGAGAA 613 Query 649 GAGCTAGAGGAATTTCAGCTCCCCATTGAAATTTCAGAGGCTTTGGAGCAGAAATCAGTC 708 |||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct 614 AAGCTAGAGGACTTTCAGCTCCCAATTGAAATTTCAGAGGCTTTGGATCAGAAATCAGTC 673 Query 709 CCTTTTGGTTATGGTTACATCCAGTTTATCGACACGGCTGTTGCAGCTGAAGTCTGTGAG 768 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 674 CCTTTTGGTTATGGTTACATCCAGTTTATCGACACGGCTGTTGCAGCTGAAGTCTGTGAG 733 Query 769 GAACTGTTTAGTCCACTTCCTCCTCATGCCGAGCTCGCATTGAATGGTGTTGAAGTATTT 828 ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 734 GAACTTTTTAGTCCACTTCCTCCTCATGCCGAGCTCGCATTGAATGGGGTTGAAGTATTT 793 Query 829 ATGAATGCAAGTGGGAGTCATCACCAACTTAGGAAACTAGATATTCGTCTGAATGCTTTT 888 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 794 ATGAATGCAAGTGGGAGTCATCACCAACTTAGGAAACTAGATATTCGTCTGAATGCTTTC 853 Query 889 ATGGGGGCTACTCATGCTCGTGGTGGGGTGTATATGTACAGTAATCAACAAGGATGCGAT 948 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 854 ATGGGGGCTACTCATGCTCGTGGTGGGGTGTATATGTACAGTAATCAACAGGGATGTGAT 913 Query 949 GGTAGCCGCTTATACTACGATGGATGTGCATGTATTGTTGTAAACGG-GAATGTTGTTGC 1007 |||||||||||||| ||||||||||||||||| |||||||||||||| | ||||||| || Sbjct 914 GGTAGCCGCTTATATTACGATGGATGTGCATGCATTGTTGTAAACGGTG-ATGTTGTCGC 972 Query 1008 TCAAGGCTCACAATTCTCGTTGAGAGACGTTGAGGTCATCATTTCACAAGTGGATCTTGA 1067 |||||||||||||||||| ||||| |||||||||||||||||||| ||| | |||||||| Sbjct 973 TCAAGGCTCACAATTCTCATTGAGGGACGTTGAGGTCATCATTTCCCAAATAGATCTTGA 1032 Query 1068 TGCGGTTGCTAGCCTTCGTGGATCTATAAGTAGCTTTCAGGAACAAGCAAGCTGCAAGGT 1127 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1033 TGCGGTTGCTAGTCTTCGTGGATCTATAAGTAGCTTTCAGGAACAAGCAAGCTGCAAGGT 1092 Query 1128 TAAAGTATCTTCAGTAGCTGTGCCCTGTAGACTTACACAGTCCTTCAACCTGAAAATGAC 1187 |||||| ||||||||||| || || ||||| || ||||| |||||||||||||||||||| Sbjct 1093 TAAAGTGTCTTCAGTAGCCGTACCATGTAGGCTAACACAATCCTTCAACCTGAAAATGAC 1152 Query 1188 ACTAAGCAGTCCGAAGAAGATCATTTACCACTCTCCACAAGAAGAAATAGCCTTTGGTCC 1247 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1153 ACTAAGCAGTCCGAAGAAGATCATTTACCACTCTCCACAAGAAGAAATAGCCTTTGGTCC 1212 Query 1248 CGCTTGCTGGATGTGGGACTATTTGAGAAGAAGTGGCGCTTCAGGATTTTTGCTTCCTCT 1307 |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 1213 CGCTTGCTGGATGTGGGACTATTTGAGAAGAAGTGGTGCTTCAGGATTTCTGCTTCCTCT 1272 Query 1308 TTCTGGCGGAGCAGACAGCTCCTCCGTGGCAGCTATTGTTGGCTGCATGTGCCAACTTGT 1367 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1273 TTCTGGCGGAGCAGACAGCTCCTCCGTGGCAGCTATTGTTGGCTGCATGTGCCAACTTGT 1332 Query 1368 TGTTAAAGAGATTGCAAAGGGAGATGAGCAAGTAAAAGCTGATGCGAA-CCGAATTGGGA 1426 ||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| Sbjct 1333 TGTTAAAGAGATTGCAAAGGGAGATGAGCAAGTAAAAGCTGATGC-AAGCCGAATTGGGA 1391 Query 1427 ATTATGCTAATGGGCAGTTTCCTACTGATAGCAAAGAGTTTGCCAAACGAATATTTTACA 1486 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1392 ATTATGCTAATGGACAGTTTCCTACTGATAGCAAAGAGTTTGCCAAACGAATATTTTACA 1451 Query 1487 CTGTCTTTATGGGTTCTGAAAACAGTTCTGAGGAGACAAAAAGGCGTTCAAAGCAGCTGG 1546 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1452 CTGTCTTTATGGGTTCTGAAAACAGTTCTGAGGAGACAAAAAGGCGTGCAAAGCAGCTGG 1511 Query 1547 CAGACGAGATTGGTGCTTGGCATCTTGATGTTTGCATAGATGGTGTTGTCTCTGCAGTTT 1606 |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 1512 CAGATGAGATCGGTGCTTGGCATCTTGATGTTTGCATAGATGGTGTTGTCTCTGCGGTTC 1571 Query 1607 TATCATTATTTCAAACAGTTACAGGCAAGCGACCAAGGTATAAGGTTGATGGAGGATCAA 1666 |||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||| Sbjct 1572 TATCTTTATTTCAAACGGTTACAGGGAAGCGACCTCGGTATAAGGTTGATGGAGGATCAA 1631 Query 1667 ATGCTGAGAACCTTGGGTTGCAGAACATTCAAGCCCGGATGAGAATGGTGTTAGCATTTA 1726 | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1632 ACGCTGAGAACCTTGGGTTGCAGAACATTCAAGCCCGGATGAGAATGGTTTTAGCATTTA 1691 Query 1727 TGTTAGCGTCTCTCTTGCCTTGGGTTCATAGCAAACCAGGCTTTTACCTTGTTCTAGGCA 1786 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1692 TGTTAGCGTCTCTCTTGCCTTGGGTTCATAGCAAACCAGGCTTTTACCTTGTTCTAGGCA 1751 Query 1787 GCTCCAACGTTGATGAAGGACTTCGTGGTTACCTGACAAAGTATGATTGCAGCTCAGCAG 1846 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1752 GCTCCAACGTCGATGAAGGACTTCGTGGTTACCTGACAAAGTATGATTGCAGCTCAGCAG 1811 Query 1847 ACATAAATCCTATAGGAAGTATCAGTAAAATGGATTTGAGGTTGTTCTTAAAATGGGCTG 1906 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1812 ACATAAATCCCATAGGAAGTATCAGTAAAATGGATTTGAGGTTGTTCTTAAAATGGGCTG 1871 Query 1907 CAACGAATCTCGGATATCCATCCTTGGCAGAGATAGAAGCTGCTCCACCAACAGCTGAGC 1966 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1872 CAACGAATCTCGGATATCCATCCTTGGCAGAGATAGAAGCTGCTCCACCAACAGCTGAGC 1931 Query 1967 TTGAGCCCATTCGTTCTGACTATTCTCAGCTCGATGAAGTCGACATGGGAATGACATATG 2026 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 1932 TTGAGCCCATTCGTTCTGACTATTCTCAGCTAGATGAAGTCGACATGGGAATGACATATG 1991 Query 2027 AAGAGCTTTCAGTCTATGGAAGGATGAGGAAGATATTCCGTTGTGGACCAGTATCTATGT 2086 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 1992 AAGAGCTTTCAGTCTATGGAAGGATGAGGAAGATATTCCGTTGTGGACCAGTTTCTATGT 2051 Query 2087 TCAAGAATCTATGTTACAAGTGGGGAACAAAGCTAAGCCCAGCAGAAGTAGCTGAGAAAG 2146 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2052 TCAAGAATCTATGTTACAAGTGGGGAACAAAGCTAAGCCCAGCAGAAGTAGCTGAGAAAG 2111 Query 2147 TGAAGTATTTCTTCAAATATTATTCGATCAATCGACACAAAATGACTGTCCTCACACCGT 2206 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2112 TGAAGTATTTCTTCAAATATTATTCGATCAATCGACACAAAATGACTGTCCTCACACCGT 2171 Query 2207 CTTATCACGCTGAGAGTTACTCCCCAGAGGACAACAGATTCGATCTGAGGCAGTTTCTGT 2266 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 2172 CTTATCACGCTGAGAGTTACTCTCCAGAGGACAACAGATTCGATCTGAGGCAGTTTCTGT 2231 Query 2267 ACAACAGCAAGTGGCCATACCAGTTTAAGAAGATTGACGAGATTGTTGACAGCTTAAATG 2326 ||||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||| Sbjct 2232 ACAACAGCAAGTGGCCATACCAGTTTAAGAAGATTGACGAGATGGTAGACGGCTTAAATG 2291 Query 2327 GTGACTCAGTTGCTTTCCCGGAAGAAGAAGCAAACTCCAACAAAGAAATTGGAGTTGTAG 2386 | |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 2292 GCGACTCAGTTGCTTTCCCGGAGGAAGAAGCAAACTCCAACAGAGAAATTGGAGTTGTAG 2351 Query 2387 CAGCAAACTCCGGAGACCCAAGTGCGGGTCTCTGATGAACATCATCCCTAAACCCTCTCT 2446 |||||||||| | ||||||||| |||||||| |||||| |||||||| | |||||| | Sbjct 2352 CAGCAAACTCTGAAGACCCAAGCGCGGGTCTGTGATGACCATCATCCAT---CCCTCTTT 2408 Query 2447 GTTTCAACCCA 2457 ||||||||||| Sbjct 2409 GTTTCAACCCA 2419 Score = 106 bits (57), Expect = 1e-21 Identities = 86/99 (87%), Gaps = 5/99 (5%) Strand=Plus/Plus Query 13 AATCGTAAAACGCCGTCGTTTCA-GTATCAAtctcttcttcttcttcttcCTCTCAAACC 71 |||||||||||| ||||||||| | |||| || |||| || || ||||||||||||| Sbjct 1 AATCGTAAAACGAAGTCGTTTCACG-CTCAA--TC-TCTTATTATTGTTCCTCTCAAACC 56 Query 72 GAATGTTCTTCTTGGTCGGTCACAATCTGTTCTGCACGA 110 |||||||||||||||||||||| |||||||||||| ||| Sbjct 57 GAATGTTCTTCTTGGTCGGTCAGAATCTGTTCTGCCCGA 95 > Ahg925505 jgi|Araly1|925505|scaffold_201066.1 Length=1867 Score = 124 bits (67), Expect = 3e-27 Identities = 111/130 (85%), Gaps = 12/130 (9%) Strand=Plus/Minus Query 2469 AGTACCCATTTCTGTACTAAGGGTGGGTTGATAACCCACATCACAAGGCATTCCACCCAA 2528 |||||||||||| ||||||||||||||||||||||||||| || ||||||||| |||||| Sbjct 944 AGTACCCATTTCGGTACTAAGGGTGGGTTGATAACCCACAGCAGAAGGCATTCTACCCAA 885 Query 2529 T-------A-A--TCGGATCCTGCTTGTACGAAACGGAAGATATTGTCTATGACTGTAGA 2578 | | | ||||||||||||||||||||||||||||||||||| || | | ||| Sbjct 884 TAAGGCGGATACCTCGGATCCTGCTTGTACGAAACGGAAGATATTGTCGATAAAT--AGA 827 Query 2579 AGTACGTCTT 2588 |||||||||| Sbjct 826 AGTACGTCTT 817 > Ahg907875 jgi|Araly1|907875|Al_scaffold_0002_956 Length=1497 Score = 124 bits (67), Expect = 3e-27 Identities = 111/130 (85%), Gaps = 12/130 (9%) Strand=Plus/Minus Query 2469 AGTACCCATTTCTGTACTAAGGGTGGGTTGATAACCCACATCACAAGGCATTCCACCCAA 2528 |||||||||||| ||||||||||||||||||||||||||| || ||||||||| |||||| Sbjct 924 AGTACCCATTTCGGTACTAAGGGTGGGTTGATAACCCACAGCAGAAGGCATTCTACCCAA 865 Query 2529 T-------A-A--TCGGATCCTGCTTGTACGAAACGGAAGATATTGTCTATGACTGTAGA 2578 | | | ||||||||||||||||||||||||||||||||||| || | | ||| Sbjct 864 TAAGGCGGATACCTCGGATCCTGCTTGTACGAAACGGAAGATATTGTCGATAAAT--AGA 807 Query 2579 AGTACGTCTT 2588 |||||||||| Sbjct 806 AGTACGTCTT 797 > Ahg475601 jgi|Araly1|475601|fgenesh2_kg.2__731__ATCG00480.1 Length=1496 Score = 113 bits (61), Expect = 6e-24 Identities = 110/131 (84%), Gaps = 14/131 (11%) Strand=Plus/Minus Query 2469 AGTACCCATTTCTGTACTAAGGGTGGGTTGATAACCCACATCACAAGGCATTCCACCCAA 2528 |||||||||||| ||||||||||||||||||||||||||| || ||||||||| |||||| Sbjct 924 AGTACCCATTTCGGTACTAAGGGTGGGTTGATAACCCACAGCAGAAGGCATTCTACCCAA 865 Query 2529 T-------A-A--TCGGATCCTGCTTGTACGAAACGGAAGATATTGTCT-ATGACTGTAG 2577 | | | || ||||||||||||||||||||||||||||||| | || | | || Sbjct 864 TAAGGCGGATACCTCAGATCCTGCTTGTACGAAACGGAAGATATTGT-TGATAAAT--AG 808 Query 2578 AAGTACGTCTT 2588 ||||||||||| Sbjct 807 AAGTACGTCTT 797 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 104214910320 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5