BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55090.1
Length=2762
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474563 jgi|Araly1|474563|fgenesh2_kg.1__4517__AT1G55090.1 3657 0.0
Ahg925505 jgi|Araly1|925505|scaffold_201066.1 124 3e-27
Ahg907875 jgi|Araly1|907875|Al_scaffold_0002_956 124 3e-27
Ahg475601 jgi|Araly1|475601|fgenesh2_kg.2__731__ATCG00480.1 113 6e-24
> Ahg474563 jgi|Araly1|474563|fgenesh2_kg.1__4517__AT1G55090.1
Length=2419
Score = 3657 bits (1980), Expect = 0.0
Identities = 2190/2291 (96%), Gaps = 15/2291 (1%)
Strand=Plus/Plus
Query 173 TTTTCAATTTTCACGATCTCCGAATTTCACGACTTTGATAC-T-TGGTTTCTT-TGCACA 229
|||||||||||||||||||| || ||||||||||||||| | | ||| ||||| | ||||
Sbjct 138 TTTTCAATTTTCACGATCTCTGAGTTTCACGACTTTGATTCTTCTGGGTTCTTCT-CACA 196
Query 230 TTCACGCGACGAAGATGAGGCTGTTGAAGGTTGCTACGTGTAACTTGAACCAATGGGCCA 289
|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 197 TTCA--CGACGAAGATGAGGCTGTTGAAGGTCGCTACGTGTAACTTGAACCAATGGGCCA 254
Query 290 TGGATTTCGAGAGCAACATGAAGAACATCAAGGCTTCGATCGCTGAGGCAAAGGCTGCTG 349
|||| |||||||||||||||||||| |||||| |||| |||||||||||||| || || |
Sbjct 255 TGGAATTCGAGAGCAACATGAAGAATATCAAGACTTCCATCGCTGAGGCAAAAGCCGCCG 314
Query 350 GTGCTGTTATCAGGCTTGGACCCGAGCTCGAGGTCACTGGCTATGGTTGCGAGGATCACT 409
||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||
Sbjct 315 GTGCTGTCATCAGGCTTGGACCTGAGCTCGAGGTCACTGGCTATGGCTGCGAGGATCACT 374
Query 410 TCTTGGAACTCGACACTGTCACTCATGCGTGGGAGTGTTTGAAGGAATTGCTGCTTGGTG 469
||||||| |||||||| ||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 375 TCTTGGAGCTCGACACCGTCACTCATTCGTGGGAGTGTTTGAAGGAATTGCTGGTTGGTG 434
Query 470 ATTGGACGGAT-GATATTTTGTGCAGCATAGGAATGCCTGTGATTAAAGGAGCAGAGCGT 528
||||||||||| || || || |||||||||||||||||||| ||||||||||| |||||
Sbjct 435 ATTGGACGGATGGA-ATATTATGCAGCATAGGAATGCCTGTTATTAAAGGAGCTGAGCGG 493
Query 529 TATAACTGCCAGGTTCTCTGTATGAACAGAAGAATCATCATGATTCGACCGAAAATGTGG 588
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 TATAATTGTCAGGTTCTCTGTATGAACAGAAGAATCATCATGATTCGACCGAAAATGTGG 553
Query 589 CTCGCAAACGATGGAAACTATAGGGAGCTACGGTGGTTCACAGCTTGGAAGCAGAGAGAA 648
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 554 CTTGCAAACGATGGAAACTATAGGGAGCTACGGTGGTTCACGGCTTGGAAGCAGAGAGAA 613
Query 649 GAGCTAGAGGAATTTCAGCTCCCCATTGAAATTTCAGAGGCTTTGGAGCAGAAATCAGTC 708
|||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 614 AAGCTAGAGGACTTTCAGCTCCCAATTGAAATTTCAGAGGCTTTGGATCAGAAATCAGTC 673
Query 709 CCTTTTGGTTATGGTTACATCCAGTTTATCGACACGGCTGTTGCAGCTGAAGTCTGTGAG 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 674 CCTTTTGGTTATGGTTACATCCAGTTTATCGACACGGCTGTTGCAGCTGAAGTCTGTGAG 733
Query 769 GAACTGTTTAGTCCACTTCCTCCTCATGCCGAGCTCGCATTGAATGGTGTTGAAGTATTT 828
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 734 GAACTTTTTAGTCCACTTCCTCCTCATGCCGAGCTCGCATTGAATGGGGTTGAAGTATTT 793
Query 829 ATGAATGCAAGTGGGAGTCATCACCAACTTAGGAAACTAGATATTCGTCTGAATGCTTTT 888
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 ATGAATGCAAGTGGGAGTCATCACCAACTTAGGAAACTAGATATTCGTCTGAATGCTTTC 853
Query 889 ATGGGGGCTACTCATGCTCGTGGTGGGGTGTATATGTACAGTAATCAACAAGGATGCGAT 948
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 854 ATGGGGGCTACTCATGCTCGTGGTGGGGTGTATATGTACAGTAATCAACAGGGATGTGAT 913
Query 949 GGTAGCCGCTTATACTACGATGGATGTGCATGTATTGTTGTAAACGG-GAATGTTGTTGC 1007
|||||||||||||| ||||||||||||||||| |||||||||||||| | ||||||| ||
Sbjct 914 GGTAGCCGCTTATATTACGATGGATGTGCATGCATTGTTGTAAACGGTG-ATGTTGTCGC 972
Query 1008 TCAAGGCTCACAATTCTCGTTGAGAGACGTTGAGGTCATCATTTCACAAGTGGATCTTGA 1067
|||||||||||||||||| ||||| |||||||||||||||||||| ||| | ||||||||
Sbjct 973 TCAAGGCTCACAATTCTCATTGAGGGACGTTGAGGTCATCATTTCCCAAATAGATCTTGA 1032
Query 1068 TGCGGTTGCTAGCCTTCGTGGATCTATAAGTAGCTTTCAGGAACAAGCAAGCTGCAAGGT 1127
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1033 TGCGGTTGCTAGTCTTCGTGGATCTATAAGTAGCTTTCAGGAACAAGCAAGCTGCAAGGT 1092
Query 1128 TAAAGTATCTTCAGTAGCTGTGCCCTGTAGACTTACACAGTCCTTCAACCTGAAAATGAC 1187
|||||| ||||||||||| || || ||||| || ||||| ||||||||||||||||||||
Sbjct 1093 TAAAGTGTCTTCAGTAGCCGTACCATGTAGGCTAACACAATCCTTCAACCTGAAAATGAC 1152
Query 1188 ACTAAGCAGTCCGAAGAAGATCATTTACCACTCTCCACAAGAAGAAATAGCCTTTGGTCC 1247
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1153 ACTAAGCAGTCCGAAGAAGATCATTTACCACTCTCCACAAGAAGAAATAGCCTTTGGTCC 1212
Query 1248 CGCTTGCTGGATGTGGGACTATTTGAGAAGAAGTGGCGCTTCAGGATTTTTGCTTCCTCT 1307
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 1213 CGCTTGCTGGATGTGGGACTATTTGAGAAGAAGTGGTGCTTCAGGATTTCTGCTTCCTCT 1272
Query 1308 TTCTGGCGGAGCAGACAGCTCCTCCGTGGCAGCTATTGTTGGCTGCATGTGCCAACTTGT 1367
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1273 TTCTGGCGGAGCAGACAGCTCCTCCGTGGCAGCTATTGTTGGCTGCATGTGCCAACTTGT 1332
Query 1368 TGTTAAAGAGATTGCAAAGGGAGATGAGCAAGTAAAAGCTGATGCGAA-CCGAATTGGGA 1426
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1333 TGTTAAAGAGATTGCAAAGGGAGATGAGCAAGTAAAAGCTGATGC-AAGCCGAATTGGGA 1391
Query 1427 ATTATGCTAATGGGCAGTTTCCTACTGATAGCAAAGAGTTTGCCAAACGAATATTTTACA 1486
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1392 ATTATGCTAATGGACAGTTTCCTACTGATAGCAAAGAGTTTGCCAAACGAATATTTTACA 1451
Query 1487 CTGTCTTTATGGGTTCTGAAAACAGTTCTGAGGAGACAAAAAGGCGTTCAAAGCAGCTGG 1546
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1452 CTGTCTTTATGGGTTCTGAAAACAGTTCTGAGGAGACAAAAAGGCGTGCAAAGCAGCTGG 1511
Query 1547 CAGACGAGATTGGTGCTTGGCATCTTGATGTTTGCATAGATGGTGTTGTCTCTGCAGTTT 1606
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1512 CAGATGAGATCGGTGCTTGGCATCTTGATGTTTGCATAGATGGTGTTGTCTCTGCGGTTC 1571
Query 1607 TATCATTATTTCAAACAGTTACAGGCAAGCGACCAAGGTATAAGGTTGATGGAGGATCAA 1666
|||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||
Sbjct 1572 TATCTTTATTTCAAACGGTTACAGGGAAGCGACCTCGGTATAAGGTTGATGGAGGATCAA 1631
Query 1667 ATGCTGAGAACCTTGGGTTGCAGAACATTCAAGCCCGGATGAGAATGGTGTTAGCATTTA 1726
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1632 ACGCTGAGAACCTTGGGTTGCAGAACATTCAAGCCCGGATGAGAATGGTTTTAGCATTTA 1691
Query 1727 TGTTAGCGTCTCTCTTGCCTTGGGTTCATAGCAAACCAGGCTTTTACCTTGTTCTAGGCA 1786
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1692 TGTTAGCGTCTCTCTTGCCTTGGGTTCATAGCAAACCAGGCTTTTACCTTGTTCTAGGCA 1751
Query 1787 GCTCCAACGTTGATGAAGGACTTCGTGGTTACCTGACAAAGTATGATTGCAGCTCAGCAG 1846
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1752 GCTCCAACGTCGATGAAGGACTTCGTGGTTACCTGACAAAGTATGATTGCAGCTCAGCAG 1811
Query 1847 ACATAAATCCTATAGGAAGTATCAGTAAAATGGATTTGAGGTTGTTCTTAAAATGGGCTG 1906
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1812 ACATAAATCCCATAGGAAGTATCAGTAAAATGGATTTGAGGTTGTTCTTAAAATGGGCTG 1871
Query 1907 CAACGAATCTCGGATATCCATCCTTGGCAGAGATAGAAGCTGCTCCACCAACAGCTGAGC 1966
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1872 CAACGAATCTCGGATATCCATCCTTGGCAGAGATAGAAGCTGCTCCACCAACAGCTGAGC 1931
Query 1967 TTGAGCCCATTCGTTCTGACTATTCTCAGCTCGATGAAGTCGACATGGGAATGACATATG 2026
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1932 TTGAGCCCATTCGTTCTGACTATTCTCAGCTAGATGAAGTCGACATGGGAATGACATATG 1991
Query 2027 AAGAGCTTTCAGTCTATGGAAGGATGAGGAAGATATTCCGTTGTGGACCAGTATCTATGT 2086
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1992 AAGAGCTTTCAGTCTATGGAAGGATGAGGAAGATATTCCGTTGTGGACCAGTTTCTATGT 2051
Query 2087 TCAAGAATCTATGTTACAAGTGGGGAACAAAGCTAAGCCCAGCAGAAGTAGCTGAGAAAG 2146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2052 TCAAGAATCTATGTTACAAGTGGGGAACAAAGCTAAGCCCAGCAGAAGTAGCTGAGAAAG 2111
Query 2147 TGAAGTATTTCTTCAAATATTATTCGATCAATCGACACAAAATGACTGTCCTCACACCGT 2206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2112 TGAAGTATTTCTTCAAATATTATTCGATCAATCGACACAAAATGACTGTCCTCACACCGT 2171
Query 2207 CTTATCACGCTGAGAGTTACTCCCCAGAGGACAACAGATTCGATCTGAGGCAGTTTCTGT 2266
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2172 CTTATCACGCTGAGAGTTACTCTCCAGAGGACAACAGATTCGATCTGAGGCAGTTTCTGT 2231
Query 2267 ACAACAGCAAGTGGCCATACCAGTTTAAGAAGATTGACGAGATTGTTGACAGCTTAAATG 2326
||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||
Sbjct 2232 ACAACAGCAAGTGGCCATACCAGTTTAAGAAGATTGACGAGATGGTAGACGGCTTAAATG 2291
Query 2327 GTGACTCAGTTGCTTTCCCGGAAGAAGAAGCAAACTCCAACAAAGAAATTGGAGTTGTAG 2386
| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 2292 GCGACTCAGTTGCTTTCCCGGAGGAAGAAGCAAACTCCAACAGAGAAATTGGAGTTGTAG 2351
Query 2387 CAGCAAACTCCGGAGACCCAAGTGCGGGTCTCTGATGAACATCATCCCTAAACCCTCTCT 2446
|||||||||| | ||||||||| |||||||| |||||| |||||||| | |||||| |
Sbjct 2352 CAGCAAACTCTGAAGACCCAAGCGCGGGTCTGTGATGACCATCATCCAT---CCCTCTTT 2408
Query 2447 GTTTCAACCCA 2457
|||||||||||
Sbjct 2409 GTTTCAACCCA 2419
Score = 106 bits (57), Expect = 1e-21
Identities = 86/99 (87%), Gaps = 5/99 (5%)
Strand=Plus/Plus
Query 13 AATCGTAAAACGCCGTCGTTTCA-GTATCAAtctcttcttcttcttcttcCTCTCAAACC 71
|||||||||||| ||||||||| | |||| || |||| || || |||||||||||||
Sbjct 1 AATCGTAAAACGAAGTCGTTTCACG-CTCAA--TC-TCTTATTATTGTTCCTCTCAAACC 56
Query 72 GAATGTTCTTCTTGGTCGGTCACAATCTGTTCTGCACGA 110
|||||||||||||||||||||| |||||||||||| |||
Sbjct 57 GAATGTTCTTCTTGGTCGGTCAGAATCTGTTCTGCCCGA 95
> Ahg925505 jgi|Araly1|925505|scaffold_201066.1
Length=1867
Score = 124 bits (67), Expect = 3e-27
Identities = 111/130 (85%), Gaps = 12/130 (9%)
Strand=Plus/Minus
Query 2469 AGTACCCATTTCTGTACTAAGGGTGGGTTGATAACCCACATCACAAGGCATTCCACCCAA 2528
|||||||||||| ||||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct 944 AGTACCCATTTCGGTACTAAGGGTGGGTTGATAACCCACAGCAGAAGGCATTCTACCCAA 885
Query 2529 T-------A-A--TCGGATCCTGCTTGTACGAAACGGAAGATATTGTCTATGACTGTAGA 2578
| | | ||||||||||||||||||||||||||||||||||| || | | |||
Sbjct 884 TAAGGCGGATACCTCGGATCCTGCTTGTACGAAACGGAAGATATTGTCGATAAAT--AGA 827
Query 2579 AGTACGTCTT 2588
||||||||||
Sbjct 826 AGTACGTCTT 817
> Ahg907875 jgi|Araly1|907875|Al_scaffold_0002_956
Length=1497
Score = 124 bits (67), Expect = 3e-27
Identities = 111/130 (85%), Gaps = 12/130 (9%)
Strand=Plus/Minus
Query 2469 AGTACCCATTTCTGTACTAAGGGTGGGTTGATAACCCACATCACAAGGCATTCCACCCAA 2528
|||||||||||| ||||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct 924 AGTACCCATTTCGGTACTAAGGGTGGGTTGATAACCCACAGCAGAAGGCATTCTACCCAA 865
Query 2529 T-------A-A--TCGGATCCTGCTTGTACGAAACGGAAGATATTGTCTATGACTGTAGA 2578
| | | ||||||||||||||||||||||||||||||||||| || | | |||
Sbjct 864 TAAGGCGGATACCTCGGATCCTGCTTGTACGAAACGGAAGATATTGTCGATAAAT--AGA 807
Query 2579 AGTACGTCTT 2588
||||||||||
Sbjct 806 AGTACGTCTT 797
> Ahg475601 jgi|Araly1|475601|fgenesh2_kg.2__731__ATCG00480.1
Length=1496
Score = 113 bits (61), Expect = 6e-24
Identities = 110/131 (84%), Gaps = 14/131 (11%)
Strand=Plus/Minus
Query 2469 AGTACCCATTTCTGTACTAAGGGTGGGTTGATAACCCACATCACAAGGCATTCCACCCAA 2528
|||||||||||| ||||||||||||||||||||||||||| || ||||||||| ||||||
Sbjct 924 AGTACCCATTTCGGTACTAAGGGTGGGTTGATAACCCACAGCAGAAGGCATTCTACCCAA 865
Query 2529 T-------A-A--TCGGATCCTGCTTGTACGAAACGGAAGATATTGTCT-ATGACTGTAG 2577
| | | || ||||||||||||||||||||||||||||||| | || | | ||
Sbjct 864 TAAGGCGGATACCTCAGATCCTGCTTGTACGAAACGGAAGATATTGT-TGATAAAT--AG 808
Query 2578 AAGTACGTCTT 2588
|||||||||||
Sbjct 807 AAGTACGTCTT 797
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104214910320
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5