BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55110.1
Length=1580
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914631 jgi|Araly1|914631|Al_scaffold_0001_4885 2104 0.0
Ahg478784 jgi|Araly1|478784|fgenesh2_kg.3__1485__AT3G13810.1 641 0.0
Ahg937195 jgi|Araly1|937195|scaffold_501386.1 377 1e-103
Ahg352566 jgi|Araly1|352566|fgenesh1_pg.C_scaffold_6003159 377 1e-103
> Ahg914631 jgi|Araly1|914631|Al_scaffold_0001_4885
Length=1371
Score = 2104 bits (1139), Expect = 0.0
Identities = 1301/1377 (94%), Gaps = 19/1377 (1%)
Strand=Plus/Plus
Query 91 ATGATGATGAACAGAGACATATTATTTCATCAACAACAACAGCAAC-A-AA-TGGAAGAG 147
||||||| |||||||||||| |||||||||||||||||||| |||| | || ||||||||
Sbjct 1 ATGATGAGGAACAGAGACATGTTATTTCATCAACAACAACAACAACAACAAGTGGAAGAG 60
Query 148 AACATGTCGAATCTAACATCAGCTTCAGGAGATCAAGCAAGTGTGTCTTCAGGAAACAGA 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AACATGTCGAATCTAACATCAGCTTCAGGAGATCAAGCAAGTGTGTCTTCAGGAAACAGA 120
Query 208 ACTGAAACTAGTGGCTCTAACATTAATCAGCATCATCAAGAACAGTGTTTTGTTCCACAA 267
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 121 ACTGAAACTAGTGGCTCTAACATTAATCAGC--GA-CAAGAACAGTGTTTTGTTCCACAA 177
Query 268 TCGTCTCTTAAGAGGAAGAGAAATCAACCAGGAAATCCAGACCCAGAAGCAGAAGTGATG 327
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 TCATCTCTTAAGAGGAAGAGAAATCAACCAGGAAATCCAGACCCAGAAGCAGAAGTGATG 237
Query 328 GCCTTATCA-CCAAAGACACTAATGGCGACAAACAGATTCATATGTGAGGTCTGCAACAA 386
|| |||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 238 GCTTTATCACCCAAA-ACACTAATGGCGACAAACAGATTCATATGTGAAGTCTGCAACAA 296
Query 387 AGGTTTTCAAAGAGACCAAAACTTGCAACTTCACAAGAGAGGACATAATCTACCGTGGAA 446
||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 297 AGGTTTTCAAAGAGACCAAAACTTGCAACTTCACAAGAGAGGACACAATTTACCATGGAA 356
Query 447 GCTTAAACAAAGATCAAACAAAGATGTGGTTAGGAAGAAAGTTTATGTTTGTCCAGAGCC 506
|||||| |||||||||| |||||||||| ||||||||||||||||||| |||||||||||
Sbjct 357 GCTTAAGCAAAGATCAACCAAAGATGTGATTAGGAAGAAAGTTTATGTCTGTCCAGAGCC 416
Query 507 AGGCTGTGTCCATCACCATCCATCGAGAGCTCTTGGTGACTTAACCGGAATCAAGAAGCA 566
| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 417 AAGCTGTGTCCATCACCATCCATCAAGAGCTCTCGGTGACTTAACCGGAATCAAGAAGCA 476
Query 567 TTTCTTCAGAAAACATGGCGAGAAGAAATGGAAATGTGAAAAGTGTTCCAAGAAATATGC 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 TTTCTTCAGAAAACATGGCGAGAAGAAATGGAAATGTGAAAAGTGTTCCAAGAAATATGC 536
Query 627 GGTGCAATCAGATTGGAAGGCTCATGCTAAGACTTGTGGCACTAAAGAATACAAATGCGA 686
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 537 GGTGCAATCAGATTGGAAGGCTCATGCTAAGACTTGTGGCACTAAAGAATACAGATGCGA 596
Query 687 CTGTGGAACTCTCTTTTCTAGGAGGGATAGTTTCATAACTCATAGAGCATTTTGCGATGC 746
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 CTGTGGAACTCTCTTTTCTAGGAGGGATAGTTTCATAACTCATAGAGCATTTTGCGATGC 656
Query 747 ATTAGCAGAAGAGAGTGCAAGAGCCATGCCAAACCCTATTATGATCCAAGCTTCAAATTC 806
||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||
Sbjct 657 ATTAGCAGAAGAGAGTGCAAGAGCCTTACCAAACCCTATTATGATCCAAGCTTCAGATTC 716
Query 807 TCCtcatcatc---atcatcatcaaacacaacaaaacatcggtttctc---ttcgtcatc 860
||||||||||| |||||||||||||||||||||||||| ||||||| ||| |||||
Sbjct 717 TCCTCATCATCTTCATCATCATCAAACACAACAAAACATCAGTTTCTCAGCTTCTTCATC 776
Query 861 ccaaaacatcatcaGCAACAGCAATCTCCATGGTCCTATGAAGCAAGAAGAATCACAGCA 920
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 777 CCAAAACATCACCAGCAACAGCAATCTCCGTGGTCCTATGAAGCAAGAAGAATCACATCA 836
Query 921 TCACTATC-AAAATATCCCTCCTTGGCTTATCTCATCAAACCCTAACCCTAATGGCAACA 979
||||| || |||| ||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct 837 TCACT-TCCAAAACATCCCTCCTTGGCTTGTCTCATCAAACCCTAACCCTAATGGCAATA 895
Query 980 ATGGTAATTTGTTCCCTCCTGTTGCTTCTTCTGTGAATACCGGGAGGTCCAGCTTTCCCC 1039
|||||||||||||||||||| |||||||||||| || || ||| |||||||||||| ||
Sbjct 896 ATGGTAATTTGTTCCCTCCTCTTGCTTCTTCTGCAAACACTGGGCGGTCCAGCTTTCACC 955
Query 1040 ACCCATCGCCGGCTATGTCAGCCACAGCTTTGCTCCAGAAAGCAGCTCAAATGGGTTCTA 1099
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 956 AGCCATCGCCGGCTATGTCAGCCACAGCTTTGCTCCAGAAAGCAGCTCAAATGGGTTCCA 1015
Query 1100 CGAAGTCAACAACTCCAGAGGAAGAAGAGAGGTCTTCGAGGTCAAGCTATAATAACTTGA 1159
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1016 CGAAGTCAACAACTCCAGAGGAAGAAGAGAGGTCGTCAAGGTCAAGCTATAATAACTTGA 1075
Query 1160 TCACGACTACAATGGCTGCTATGATGACTTCACCACCAGAACCTGGCTTCGGATTTCAAG 1219
||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||||||||
Sbjct 1076 TCACGACTACAATGGCTGCGATGATGACCTCACCACCTGAACCTGGCTTTGGATTTCAAG 1135
Query 1220 ACTATTACATGATGAATCATCAACATCACGGTGGAGGAGAAGCTTTCAACGGTGGTTTTG 1279
||||||||||||||||||||||||||||||| |||||||||||||||||| | | |||||
Sbjct 1136 ACTATTACATGATGAATCATCAACATCACGGCGGAGGAGAAGCTTTCAACAGCGCTTTTG 1195
Query 1280 TCCCCGGAGAAGAGAAGAACGACGTCGTGGACGACGGTGGAGGAGAGACGAGAGATTTCT 1339
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 TCCCCGGAGAAGACAAGAACGACGTCGTGGACGACGGTGGAGGAGAGACGAGAGATTTCT 1255
Query 1340 TGGGGCTAAGGTCGTTAATGTCGCATAACGAGATTCTAAGTTTCGCGAATAATCTTGGCA 1399
|||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 1256 TGGGGCTAAGGTCGTTAATGTCGCATAACGAGATTCTAAGCTTCGCTAATAATCTTGGAA 1315
Query 1400 ACTGTCTCAACACTTCTGCTACAGAGcaacaacaacaacaacaTAGCCACCAAGATT 1456
|||||||||||||||| ||| |||||||| |||| ||||| ||||| ||||||||
Sbjct 1316 ACTGTCTCAACACTTCGGCTTCAGAGCAAGAACAGCAACA---TAGCCTCCAAGATT 1369
> Ahg478784 jgi|Araly1|478784|fgenesh2_kg.3__1485__AT3G13810.1
Length=2064
Score = 641 bits (347), Expect = 0.0
Identities = 589/702 (84%), Gaps = 31/702 (4%)
Strand=Plus/Plus
Query 92 TGATGATGAACAGAGACATATTATTTCATCAACAACAACAGCAACAA-ATGGAAGAGAAC 150
|||||||||||| |||||| ||| |||| || || || || | |||| | || |||||
Sbjct 434 TGATGATGAACAAAGACATGTTACTTCACCAGCATCATCAACCACAACA-AGACGAGAAT 492
Query 151 ATGTCGAATCTAACATCAGCTTCAGGAGATCAAGCAAGTGTGTCTTCAGGAAACAGAACT 210
||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |||
Sbjct 493 ATGTCGAATCTAACATCAGCTTCTGGGGATCAAGCAAGTGTCTCTTCAGGAAACATAACC 552
Query 211 GAAACTAGTGGCTCT-A--ACAT---T-A--ATCAGC-A--TC-ATCA-AG-AACAG-TG 254
||| | ||||| ||| | || | | | |||||| | || | | || ||||| |
Sbjct 553 GAAGCAAGTGGTTCTAATTACTTCCCTCATCATCAGCAACTTCAAGAACAGCAACAGCAG 612
Query 255 -T-TTTGTTCCACAAT--C-GTCTCTTAAGAGGAAGAGAAATCAACCAGGAAATCCAGAC 309
| ||||||||| | | | | ||| |||| || |||||| |||||||| |||||||||
Sbjct 613 TTCTTTGTTCCAGATTCGCAGCCTCAAAAGAAGAGGAGAAACCAACCAGGGAATCCAGAC 672
Query 310 CCAGAAGCAGAAGTGATGGCCTTATCACCAAAGACACTAATGGCGACAAACAGATTCATA 369
|||||| |||||||||| || ||||||||||| ||||||||||| |||||||||||| |
Sbjct 673 CCAGAATCAGAAGTGATAGCTTTATCACCAAAAACACTAATGGCAACAAACAGATTCGTG 732
Query 370 TGTGAGGTCTGCAACAAAGGTTTTCAAAGAGACCA-AAACTTGCAACTTCACAAG-AGAG 427
|||||| |||||||||||||||| ||||||||||| || | | || ||||| || ||||
Sbjct 733 TGTGAGATCTGCAACAAAGGTTTCCAAAGAGACCAGAATC-TACAGCTTCA-TAGAAGAG 790
Query 428 GACATAATCTACCGTGGAAGCTTAAACAAAGATCAAACAAAGATGTGGTTAGGAAGAAAG 487
| || ||||| || |||||||| ||||||||||| |||||||| ||| | ||||||||||
Sbjct 791 GTCACAATCTGCCATGGAAGCTGAAACAAAGATCCAACAAAGAAGTGATAAGGAAGAAAG 850
Query 488 TTTATGTTTGTCCAG-AGCCAGGCTGTGTCCATCACCATCCATCGAGAGCTCTTGGTGAC 546
| ||||| ||||||| || || | |||||||| || ||||||| |||||||| ||||||
Sbjct 851 TGTATGTATGTCCAGAAG-CAAGTTGTGTCCACCATGATCCATCTAGAGCTCTCGGTGAC 909
Query 547 TTAACCGGAATCAAGAAGCATTTCT-TCAGAAAACATGGCGAGAAGAAATGGAAATGTGA 605
||||||||||||||||||||||||| | ||||||||||| |||||||| |||||||||||
Sbjct 910 TTAACCGGAATCAAGAAGCATTTCTGT-AGAAAACATGGAGAGAAGAAGTGGAAATGTGA 968
Query 606 AAAGTGTTCCAAGAAATATGCGGTGCAATCAGATTGGAAGGCTCATGCTAAGACTTGTGG 665
|||||||| ||||||||||| || |||||||| || ||||||||| |||||||||||||
Sbjct 969 TAAGTGTTCAAAGAAATATGCTGTTCAATCAGACTGCAAGGCTCATTCTAAGACTTGTGG 1028
Query 666 CACTAAAGAATACAAATGCGACTGTGGAACTCTCTTTTCTAGGAGGGATAGTTTCATAAC 725
||| |||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 1029 CACCAAAGAATACAGATGTGACTGTGGCACTCTCTTTTCTAGGAGGGATAGTTTCATAAC 1088
Query 726 TCATAGAGCATTTTGCGATGCATTAGCAGAAGAGAGTGCAAG 767
||||||||||||||| || ||||| || ||||||| ||||||
Sbjct 1089 TCATAGAGCATTTTGTGAAGCATTGGCTGAAGAGACTGCAAG 1130
> Ahg937195 jgi|Araly1|937195|scaffold_501386.1
Length=1393
Score = 377 bits (204), Expect = 1e-103
Identities = 407/503 (81%), Gaps = 22/503 (4%)
Strand=Plus/Plus
Query 277 AAGAGGAAGAGAAATCAACCAGGAAATCCAGACCCAGAAGCAGAAGTGATGGCCT-TATC 335
|||||||||||||||| || ||||||||||| ||||| |||||||| || | || ||||
Sbjct 135 AAGAGGAAGAGAAATCTCCCGGGAAATCCAGATCCAGATGCAGAAGTCATCG-CTCTATC 193
Query 336 ACCAAAGACACTAATGGCGACAAA-CAGATTCATATGTGAGGTCTGCAACAAAGGTTTTC 394
||||| | || ||||||||||| | |||||||||| ||| | ||||||||||| |||
Sbjct 194 GCCAAACTCCCTCATGGCGACAAATC-GATTCATATGCGAGATTTGCAACAAAGGGTTT- 251
Query 395 AA-AGAGACCA-AAACTTGCAACTTCACAAGAGAGGACATAATCTACCGTGGAAGCTTAA 452
|| |||||||| || ||| || |||||| |||||| ||||| || || ||||||| |||
Sbjct 252 AAGAGAGACCAGAACCTT-CAGCTTCACCGGAGAGGCCATAACCTTCCATGGAAGC-TAA 309
Query 453 A-CAAA-GATCAAACAAAGATG-TGGTTAGGAAGAAAGTTTATGTTTGTCCAGAGCCAG- 508
| |||| || ||||||| || | || | ||| ||||| || | ||||||||| ||
Sbjct 310 AGCAAAGGA-CAAACAAGGA-GCAAGTGAAGAAAAAAGTGTACATCTGTCCAGAG-AAGA 366
Query 509 GCTGTGTCCATCACCATCCATCGAGAGCTCTTGGTGACTTAACCGGAATCAAGAAGCATT 568
|||| || || || | || | |||| || ||||||||||||||||||||||||||||
Sbjct 367 GCTGCGTACACCATGACCCGGCCCGAGCCCTCGGTGACTTAACCGGAATCAAGAAGCATT 426
Query 569 TCTTCAGAAAACATGGCGAGAAGAAA-TGGAAATGTGAAAAGTGTTCCAAGAAATATGCG 627
|| |||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct 427 TCAGCAGAAAACATGGTGAGAA-AAAGTGGAAATGTGACAAGTGTTCCAAGAAATATGCT 485
Query 628 GTGCAA-TCAGATTGGAAGGCTCAT-GCTAAGACTTGTGGCACTAAAGAATACAAATGCG 685
|| || || |||||||| |||||| || |||| |||||| |||| |||||||| ||| |
Sbjct 486 GT-CATGTCCGATTGGAAAGCTCATAGC-AAGATTTGTGGTACTAGAGAATACAGATGTG 543
Query 686 ACTGTGGAACTCTCTTTTCTAGGAGGGATAGTTTCATAACTCATAGAGCATTTTGCGATG 745
||||||| || |||||||| |||| ||||||||||| || ||||||||||| || || |
Sbjct 544 ACTGTGGTACCCTCTTTTCCAGGAAAGATAGTTTCATCACACATAGAGCATTCTGTGACG 603
Query 746 CATTAGCAGAAGAGAGTGCAAGA 768
| ||||| ||||||| ||| |||
Sbjct 604 CCTTAGCTGAAGAGAATGCTAGA 626
> Ahg352566 jgi|Araly1|352566|fgenesh1_pg.C_scaffold_6003159
Length=1218
Score = 377 bits (204), Expect = 1e-103
Identities = 389/478 (81%), Gaps = 14/478 (3%)
Strand=Plus/Plus
Query 298 GGAAATCCAGACCCAGAAGCAGAAGTGATGGCCTTATCACCAAAGACACTAATGGCGACA 357
|||||||| || ||||| ||||| ||||| || ||||||||||||||||| | || |||
Sbjct 184 GGAAATCCTGATCCAGATGCAGAGGTGATCGCATTATCACCAAAGACACTTCTTGCAACA 243
Query 358 AACAGATTCATATGTGAGGTCTGCAACAAAGGTTTTCAAAGAGACCA-AAACTTGCAACT 416
||||||||| | |||||| | ||||||||||| || |||||||| || || | | || ||
Sbjct 244 AACAGATTCGTTTGTGAGATATGCAACAAAGGGTTCCAAAGAGATCAGAATC-TACAGCT 302
Query 417 TCACAAGAGAGGACATAATCTACCGTGGAAGCTTAAACA-AAGATCAAACAAAGATGTGG 475
||||| |||||| || ||||| || |||||||| ||||| |||| | | ||||||
Sbjct 303 TCACAGGAGAGGCCACAATCTTCCATGGAAGCTGAAACAGAAGAAC-AGCAAAGAACAAC 361
Query 476 TTAGGAAGAAAGTTTATGTTTGTCCAGAGCCAGGCTGTGTCCATCACCATCCATCGAGAG 535
| ||||||||||||||| || |||||| || |||||| ||||| |||||||| ||||
Sbjct 362 AAAAGAAGAAAGTTTATGTGTGCCCAGAGACAAACTGTGTTCATCATCATCCATCTAGAG 421
Query 536 CTCTTGGTGACT-TAACCGGAATCAAGAAGCA-TTTCTTCAGAAAACATGGCGAGAAGAA 593
|||||||||| | | || || |||||||| || ||| | ||| |||||||| ||||||||
Sbjct 422 CTCTTGGTGA-TCTCACAGGGATCAAGAAACACTTT-TGCAGGAAACATGGAGAGAAGAA 479
Query 594 ATGGAAATGTGAAAAGTGTTCCAAGAAATATGCGGTGCAATCAGATTGGAAGGCTCATGC 653
||||||||||||||||||||| ||| ||||| || ||||| |||||||| |||||| |
Sbjct 480 ATGGAAATGTGAAAAGTGTTCAAAGTTCTATGCTGTTCAATCTGATTGGAAAGCTCATAC 539
Query 654 TAAGA-CTTGTGGCACTAA-AGAATACAAATGCGACTGTGGAACTCTCTTT-TCTAGGAG 710
|||| || |||| || || ||| || | ||| |||||||| ||||| ||| || ||||
Sbjct 540 CAAGATCT-GTGGTAC-AAGAGATTATAGATGTGACTGTGGCACTCT-TTTCTCGAGGAA 596
Query 711 GGATAGTTTCATAACTCATAGAGCATTTTGCGATGCATTAGCAGAAGAGAGTGCAAGA 768
|| ||||||||||| |||||||| ||||| ||||||||||||||||| |||||||||
Sbjct 597 AGACAGTTTCATAACGCATAGAGCGTTTTGTGATGCATTAGCAGAAGAAAGTGCAAGA 654
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59192240730
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5