BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55120.1
Length=1925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474565 jgi|Araly1|474565|fgenesh2_kg.1__4519__AT1G55120.1 2754 0.0
Ahg478781 jgi|Araly1|478781|fgenesh2_kg.3__1482__AT3G13790.1 662 0.0
> Ahg474565 jgi|Araly1|474565|fgenesh2_kg.1__4519__AT1G55120.1
Length=1824
Score = 2754 bits (1491), Expect = 0.0
Identities = 1721/1833 (94%), Gaps = 12/1833 (1%)
Strand=Plus/Plus
Query 1 CAAAAGAAACAGAACAACAATGGCGAAATTAAATCGTTCCAACATTGGTCTCTCACTGTT 60
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 CAACAGAAACAGAACAACAATGGCAAAATTAAATCGTTCCAACATTGGTCTCTCACTGTT 60
Query 61 ACTATCTATGTTCCTCGCAAACTTTATCA-CCGATCTTGAAGCTTCTTCTCATCAAGATC 119
||||||| ||||||||||||||||||||| || ||||||||| |||||||||||||||
Sbjct 61 ACTATCTTTGTTCCTCGCAAACTTTATCATCC-ATCTTGAAG---CTTCTCATCAAGATC 116
Query 120 TCAACCAACCGTACCGGACCGGTTATCACTTTCAACCTCTCAAAAATTGGATGAACGATC 179
|||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct 117 TCAACCAACCGTACCGAACCGGTTATCACTTTCAACCTCCCCGAAATTGGATGAACGATC 176
Query 180 CTAATGGACCAATGATATACAAAGGAATATACCATCTTTTTTACCAATATAACCCATACG 239
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 177 CTAATGGACCAATGATATACAAAGGAATATACCATCTTTTTTACCAATATAATCCATACG 236
Query 240 GTGCCGTTTGGGATGTGAGAATCGTGTGGGGACACTCCACGTCAGTTGACTTAGTCAACT 299
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 237 GTGCCGTTTGGGATGTAAGAATCGTATGGGGACACTCCACGTCAGTTGACTTAGTCAACT 296
Query 300 GGATTTCACAACCTCCAGCTTTTAATCCATCTCAGCCGTCAGATATCAACGGTTGTTGGT 359
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 297 GGATTTCACAACCTCCAGCTTTTAATCCATCTCAGCCGTCAGATACCAACGGCTGTTGGT 356
Query 360 CAGGCTCCGTCACGATTCTACCAAACGGCAAACCTGTGATCCTCTACACCGGCATTGACC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CAGGCTCCGTCACGATTCTACCAAACGGCAAACCTGTGATCCTCTACACCGGCATTGACC 416
Query 420 AAAACAAAGGTCAAGTCCAAAACGTCGCCGTTCCGGTTAACATCTCTGATCCTTATCTCC 479
|||||||| ||||||||||||||||||||||||||||||| | || |||||||||||||
Sbjct 417 AAAACAAAAGTCAAGTCCAAAACGTCGCCGTTCCGGTTAATGTTTCCGATCCTTATCTCC 476
Query 480 GAGAATGGTCAAAACCGCCGCAAAATCCTCTAATGACAACTAACGCGGTTAACGGAATTA 539
|| |||||||||||||||||| ||||||||| |||||| |||||||||| ||||||||||
Sbjct 477 GACAATGGTCAAAACCGCCGCGAAATCCTCTTATGACACCTAACGCGGTAAACGGAATTA 536
Query 540 ACCCGGACCGGTTTCGTGATCCGACCACCGCGTGGCTTGGACGTGACGGAGAATGGCGAG 599
||||||||||||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 537 ACCCGGACCGGTTCCGAGATCCGACCACCGCGTGGCTTGGACGTGACGGTGAATGGCGAG 596
Query 600 TAATCGTCGGAAGCTCGACGGACGATCGACGAGGATTAGCGATTCTTTACAAAAGCAGAG 659
| |||||||||||||| ||||||||||| ||||| ||||| ||||||||||| |||| ||
Sbjct 597 TGATCGTCGGAAGCTCCACGGACGATCGTCGAGGGTTAGCCATTCTTTACAACAGCAAAG 656
Query 660 ATTTCTTCAACTGGACGCAATCAATGAAGCCTTTACATTACGAAGACTTAACCGGAATGT 719
|||||||||| ||||||||||| | ||| ||||| |||||||||||||||||||||||||
Sbjct 657 ATTTCTTCAATTGGACGCAATCGACGAATCCTTTGCATTACGAAGACTTAACCGGAATGT 716
Query 720 GGGAATGTCCTGATTTTTTCCCGGTTTCGATAACCGGATCGGACGGTGTAGAAACGTCGT 779
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 717 GGGAATGTCCTGATTTTTTCCCGGTTTCGATAACCGGATCAGACGGTGTTGAAACGTCGT 776
Query 780 CGGTTGGTGAGAATGGGATTAAGCATGTGCTTAAAGTGAGTTTGATTGAGACATTGCATG 839
|| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CGTTTAGTGAGAATGGGATTAAGCATGTGCTTAAAGTGAGTTTGATTGAGACATTGCATG 836
Query 840 ATTATTACACGATTGGGAGTTATGATCGTGAGAAAGATGTTTACGTACCGGATCTTGGGT 899
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 837 ATTATTACACGATTGGGAGTTATGATCGTGAGAAAGATGTTTACGTACCGGATCTTGGGT 896
Query 900 TTGTGCAAAACGAATCAGCTCCGAGGTTAGATTACGGGAAATATTACGCGTCGAAAACGT 959
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 897 TTGTGCAAAACGGATCGGCTCCGAGGTTAGATTACGGGAAATATTACGCGTCGAAAACGT 956
Query 960 TTTACGATGATGTTAAAAAACGAAGGATCTTGTGGGGTTGGGTTAATGAATCGTCTCCAG 1019
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
Sbjct 957 TTTACGATGATGTTAAGAAACGAAGAATCTTGTGGGGTTGGGTTAATGAATCGTCTCCGG 1016
Query 1020 CTAAAGATGATATTGAGAAGGGTTGGTCTGGTCTTCAGTCATTTCCGAGGAAAATATGGC 1079
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 CTAAAGATGATATTAAGAAGGGTTGGTCTGGTCTTCAGTCATTTCCGAGGAAAATATGGC 1076
Query 1080 TCGATGAATCAGGAAAGGAATTGCTACAGTGGCCGATTGAAGAGATTGAGACATTGCGTG 1139
|||||||||| |||||| ||||||| || ||||| ||||||||||||||||| |||||||
Sbjct 1077 TCGATGAATCGGGAAAGCAATTGCTGCAATGGCCTATTGAAGAGATTGAGACGTTGCGTG 1136
Query 1140 GG-CAACAAGTCAACTGGCAAAAGAAAGTTCTCAAAGCAGGATCTACTCTCCAAGTTCAT 1198
|| || |||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1137 GGACA-CAAGTCGACTGGCACAAGAAAGTTCTCAAAGCAGGATCTACTCTCCAAGTTCAT 1195
Query 1199 GGTGTCACTGCTGCGCAGGCAGATGTTGAGGTATCGTTCAAGGTGAAGGAATTGGAAAAG 1258
|||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1196 GGTGTCACTGCTGCACAGGCAGATGTTGAGGTATCGTTCAAGGTGAAAGAATTGGAAAAA 1255
Query 1259 GCGGATGTGATTGAACCGAGTTGGACCGATCCACAAAAGATATGTAGTCAGGGAGATTTA 1318
|||||||| ||||||||||||||||| || |||||||||||||| ||| | ||||||||
Sbjct 1256 GCGGATGTCATTGAACCGAGTTGGACTGACCCACAAAAGATATGCAGTGACGGAGATTTG 1315
Query 1319 TCGGTTATGTCGGGTTTAGGACCATTTGGTTTGATGGTTTTGGCATCCAATGACATGGAA 1378
||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1316 TCGGTTAACTCCGGTTTAGGACCATTTGGTTTGATGGTTTTGGCATCCAAAGACATGGAA 1375
Query 1379 GAGTACACGTCCGTTTACTTCAGAATTTTCAAGTCAAATGACGATACTAACAAGAAGACT 1438
|||||||||||||||||||||||||| |||||||||||||| |||||||| ||||| |||
Sbjct 1376 GAGTACACGTCCGTTTACTTCAGAATCTTCAAGTCAAATGATGATACTAATAAGAATACT 1435
Query 1439 AAATACGTGGTGTTGATGTGCAGTGACCAAAGCAGATCATCGTTAAATGATGAAAATGAT 1498
|| ||||||||||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct 1436 AAGTACGTGGTGTTGATGTGCAGTGACCAAAGCAGATCATCGTTGAACGAGGAAAATGAT 1495
Query 1499 AAATCAACCTTTGGTGCTTTTGTTGCGATAGACCCTTCTCACCAAACAATTTCTCTTAGG 1558
|||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 1496 AAATCAACGTTTGGTGCTTTTGTGGCGATAGACCCTTCTCACCAAACAGTTTCTCTTAGG 1555
Query 1559 ACTTTGATTGATCACTCGATAGTGGAGAGTTATGGTGGAGGAGGCAGAACATGTATAACC 1618
||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1556 ACTTTGATTGATCACTCAATAGTGGAGAGTTATGGTGGAGGAGGCGGAACTTGTATAACC 1615
Query 1619 TCAAGAGTGTATCCAAAATTGGCAATCGGAGAAAATGCAAATCTGTTTGTCTTCAACAAA 1678
|||||||||||||||||||| ||||| ||||||||||||||||| |||| ||||||||||
Sbjct 1616 TCAAGAGTGTATCCAAAATTAGCAATTGGAGAAAATGCAAATCTTTTTGCCTTCAACAAA 1675
Query 1679 GGCACTCAAAGTGTTGATATCTTGACCCTAAGTGCTTGGAGTTTAAAGTCTGCTCAAATC 1738
|| ||||||||||||||| | |||| ||||||||||||||| || |||||||||||||||
Sbjct 1676 GGAACTCAAAGTGTTGATGTATTGAGCCTAAGTGCTTGGAGCTTGAAGTCTGCTCAAATC 1735
Query 1739 AATGGCGACTTAATGTCACCATTTATTGAGCGTGAAGAGTCACGCTCACCTAATCATCAG 1798
|||| ||| | ||||||||||||||||||||||||||| |||| |||||||||||| |
Sbjct 1736 AATGACGAGTCAATGTCACCATTTATTGAGCGTGAAGATTCACACTCACCTAATCA---G 1792
Query 1799 TTTTGA-ATGAAAAATATTTTACATTGTACGGG 1830
| |||| | ||||| ||||||||||||||||||
Sbjct 1793 TCTTGAGAGGAAAA-TATTTTACATTGTACGGG 1824
> Ahg478781 jgi|Araly1|478781|fgenesh2_kg.3__1482__AT3G13790.1
Length=1962
Score = 662 bits (358), Expect = 0.0
Identities = 1263/1680 (75%), Gaps = 142/1680 (8%)
Strand=Plus/Plus
Query 122 AACCAACCGTACCGGACCGGTTAT-CACTTTCAACCTCTC-AAAAATTGGATGAACGATC 179
||||| || |||||||| |||| | || |||||||||| | ||||||||||||||||
Sbjct 174 AACCAGCCCTACCGGACAGGTT-TCCATTTTCAACCTC-CAAAAAATTGGATGAACG--- 228
Query 180 CTAATGGACCAATGATATACAAAGGAATATACCATCTTTTTTACCAATATAACCC-ATAC 238
|| || |||||||||||||||||||| |||||||| ||||||| ||||| | |
Sbjct 229 -----GG-CCTATGATATACAAAGGAATATATCATCTTTTCTACCAATGGAACCCGA-AA 281
Query 239 GGTGCCGTTTGGGATGTGAGA-ATCGTGTGGGGACACTCCACGTCAGTTGACTTAGTCAA 297
|| || || |||| || | | |||||||||| || ||||||||| |||||| ||||
Sbjct 282 GGAGCTGTGTGGG--GT-A-ACATCGTGTGGGCTCATTCCACGTCAACAGACTTAATCAA 337
Query 298 CTGGATTTCACAACCTCCAGCTTTTAAT-CCATCT-CAGCCG-TCAGATATCAACGGTTG 354
||||| |||| |||||||| | | | |||||| || ||| || ||||||||||| ||
Sbjct 338 CTGGAACCCACATCCTCCAGC-TATCTTCCCATCTGCA-CCGTTC-GATATCAACGGATG 394
Query 355 TTGGTCAGGCTCCGTC-ACGATTCTACCAAACGGCAAACCTGTGATCCTCTACACCGGCA 413
||||| || | || | || ||||| || || |||||||| || || || || ||||| |
Sbjct 395 CTGGTCCGG-TTCGGCTACAATTCTCCCTAATGGCAAACCGGTTATTCTATATACCGGAA 453
Query 414 TTGA-CC-AA-AACAAAGGTCAAGTCCAAAACGTCGCCGTTCCGGTTAA-CATCTCTGAT 469
| || || || ||| || || ||||||||| | || | || || | ||||||||
Sbjct 454 TCGACCCTAAGAACCAA---CAGGTCCAAAACATAGCGGAGCCTAAGAATC-TCTCTGAT 509
Query 470 CCTTATCTCCGAGAATGGTCAAAACCGCCGCAAAATCCTCTAATGACAACTAACGCGGTT 529
|||||||||||||||||| |||| ||||| ||||||||| ||| | || |||| |||
Sbjct 510 CCTTATCTCCGAGAATGGAAAAAATCGCCGTTAAATCCTCTGATGGCTCCTGACGCCGTT 569
Query 530 AACGGAATTAAC-CCGGAC-CGGTTTCGTGATCCGACCACCGCGTGGCTTGGACGTGACG 587
|||||||| ||| || | | | ||| ||||| || |||||||||||||| || | |||
Sbjct 570 AACGGAATCAACGCCAG-CTC-GTTCCGTGACCCAACCACCGCGTGGCTAGGCCAAGAC- 626
Query 588 GAGAA-TGGCGAGTAATCGTCGGAAGCTCGACGGACGATCGACGAGGATTAGCGATT-CT 645
|||| ||| |||| || |||||||| || | | || || ||| |||||||| |
Sbjct 627 AAGAAGTGGAGAGTGATTATCGGAAGCAAGA--TTC-ACCGTCGTGGACTAGCGATTAC- 682
Query 646 TTACAAAAGCAGAGA-TTTCTTCAACT-GGACGCAA--TCAATGAAGCCTTTACATTACG 701
||||| || | ||| |||| | || | ||| || || | | |||| || |||||||
Sbjct 683 TTACACGAGTAAAGACTTTC-TAAAATGGGA-AAAATCTCCA-G-AGCCGTTGCATTACG 738
Query 702 AAGACTTAACCGGAATGTGGGAATGTCCTGATTTTTTCCCGGTTTCGATAACCGGATCGG 761
| ||| || |||||||||||||||||||||||||||||||| ||| | || ||
Sbjct 739 ACGACGGAAGTGGAATGTGGGAATGTCCTGATTTTTTCCCGGTGACGAGATTTGGTTCTA 798
Query 762 ACGGTGTAGAAACGTCGTCGGTTGGT-GA--GAATGGGA--TT-AAGCATGTGCTT-AAA 814
|||| || |||||||| ||| ||||| || |||| || || ||||| ||| || |||
Sbjct 799 ACGGCGTGGAAACGTCTTCGTTTGGTGGACCTAATGAGATTTTAAAGCACGTG-TTGAAA 857
Query 815 GTGAG-TTTGATTGAGAC-ATTGCATGATTATTACACGATTGGGA-GTTATGATCGTGAG 871
|| || || || || || | |||||||||||||||||||| | | || || || |
Sbjct 858 GTAAGCTTGGA-CGATACGA-AACATGATTATTACACGATTGGTACG-TACGACCGGGTT 914
Query 872 AAAGAT-GTTTACGTACCGGATC-TTGGGTTT--G-TGCAAAACGAATCAGCTCCGAGGT 926
|||||| || ||||||||| | ||||||| | || | | | | | ||||| | |
Sbjct 915 AAAGATAAATT-CGTACCGGA-CAATGGGTTTAAGATG-GACA-GTA-CGGCTCC-AAGA 968
Query 927 TA-GATTACGGGAAATATTACGCGTCGAAAACGTTTTACGA-TGATGTTAAAAAACGAAG 984
|| ||||||||||| ||||||||||||||||||||||| || | || || || || ||
Sbjct 969 TACGATTACGGGAAGTATTACGCGTCGAAAACGTTTTATGACT-CTGGCAAGAACCGGAG 1027
Query 985 GATCTTGTGGGGTTGGGTTAATGAATCGTC-TCCAGCTAAAGATGATATTGAGAAGGGTT 1043
||||||||||||||| ||| || || || | | | | | |||||| ||||||| || |
Sbjct 1028 AATCTTGTGGGGTTGGACTAACGAGTCATCGT-CTGTTGAGGATGATGTTGAGAAAGGCT 1086
Query 1044 GGTCTGGTCTTCAGTC-ATTTCCGAGGAAAATATGGCTCGAT-GAATCA-GGAAAGGAAT 1100
|||| ||| ||||| | | ||||||||||||||||||| ||| | |||| ||||| |||
Sbjct 1087 GGTCCGGTATTCAGACGA-TTCCGAGGAAAATATGGCTTGATCG-ATCAGGGAAA-CAAT 1143
Query 1101 TGCTACAGTGGCCGATTGAAGAG-A-TTGAGACATTGCGTGGGCAACAAGTC---AACTG 1155
| | ||||||||| || || | | |||| | ||| ||| | |||||||| ||||
Sbjct 1144 TAATTCAGTGGCCGGTT--AGGGAAGTTGAAAGATTACGTACGAAACAAGTCAAAAACTT 1201
Query 1156 GCAAAAGAAAGTTCTCAAAG-CAGGATCTACTCTCCAAGTTC-ATGGTGTCACTGCTGCG 1213
| || |||||||| |||| ||||||||| || ||| || ||||||| || |||||
Sbjct 1202 ACGCAACAAAGTTCT-AAAGTCAGGATCTAGGCTTGAAG-TCTATGGTGTGACAGCTGCA 1259
Query 1214 CAGGCAGATGTTGAGGTATCGTTCAAGGTGAAG-GAATTGGA-AAAGGCGGATGTGATTG 1271
||||| ||||| || || | ||||| || ||| || ||||| ||| |||||||| ||
Sbjct 1260 CAGGCGGATGTGGAAGTTTTATTCAAAGT-AAGAGACTTGGAGAAA-GCGGATGTTATAA 1317
Query 1272 AACCGAGTTGGACCGATCCACAAAAGATATGTAGTCAG-GGAGATTTATCGGTTATGTCG 1330
|||| |||||||| ||||| || ||| ||||| ||| || || ||||||||| |||
Sbjct 1318 AACCAAGTTGGACTGATCCGCAGTTGATTTGTAGCCAGATGA-ATGTATCGGTTAAGTCT 1376
Query 1331 GGTTTAGGACCATTTGGTTTGATGGTTTTGGCATCCAATG-ACATGGAAGAGTACACGTC 1389
|||||||| ||||| ||||| |||||||||||||| || | | ||||||||||||| ||
Sbjct 1377 GGTTTAGGTCCATTCGGTTTAATGGTTTTGGCATCTAA-GAATTTGGAAGAGTACACATC 1435
Query 1390 CGTTTACTTCAGAATTTTC-AAGTCAAATGACGATACTAACAAGA-AGACTAAATACGTG 1447
||||| || ||||| ||| ||| | | || | | || || | || ||| || ||
Sbjct 1436 TGTTTATTTTAGAATCTTCAAAG-C---T--CG-T-C-AA-AACAGCGA-TAAGTATGTT 1484
Query 1448 GTGTTGATGTGCAGTGACCAAAGCAGATCATCGTTAAATGATGAAAATGATAAATCAACC 1507
||| | ||||||||||||||||||||||| || | | || || ||||| ||| | |||
Sbjct 1485 GTGGTCATGTGCAGTGACCAAAGCAGATCTTCACTGGAGGAAGATAATGACAAAACGACC 1544
Query 1508 TTTGGTGCTTTTGTTGCGATAG-ACCCTTCTCACCAAACAATTTCTCTTAGGA-CTTTGA 1565
| || |||||||| | |||| | | |||||||| || | || || || | | ||||
Sbjct 1545 TACGGAGCTTTTGT-G-GATATTAATC--CTCACCAACCACTATCCCTCAG-ATCCTTGA 1599
Query 1566 TTGATCACTC-GATAGTGGAGAGTTATGGTGGA--GGAGGCAGAACATGTATAACCTCAA 1622
||||||| || | |||||||||||| ||||||| || || ||| |||| || |||||||
Sbjct 1600 TTGATCATTCTG-TAGTGGAGAGTTTTGGTGGAAAGG-GG-AGAGCATGCATTACCTCAA 1656
Query 1623 GAGTGTATCCAAAATTGGCAATCGGAGAAAA-TGCAAATCTGTTTG-TCTTCAACAAAGG 1680
|||||||||||||||||||||| ||| |||| | || |||| |||| | || || | ||
Sbjct 1657 GAGTGTATCCAAAATTGGCAATAGGA-AAAAGTTCACATCTCTTTGCTTTT-AATTATGG 1714
Query 1681 C-ACTCAAAGTGTTGATATCTTGACCCTAAGTGCTTGGAGTTTAAAGTCTGCTCAAATCA 1739
| ||||||||||||| |||| | ||||| ||||||||| | || |||||||||||||
Sbjct 1715 ATA-TCAAAGTGTTGATCTCTTAAACCTAAATGCTTGGAGCATGAACTCTGCTCAAATCA 1773
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72333375255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5