BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55130.1
Length=2041
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474567 jgi|Araly1|474567|fgenesh2_kg.1__4521__AT1G55130.1 3301 0.0
Ahg478776 jgi|Araly1|478776|fgenesh2_kg.3__1477__AT3G13772.1 2111 0.0
Ahg942065 jgi|Araly1|942065|scaffold_602609.1 699 0.0
Ahg940557 jgi|Araly1|940557|scaffold_601101.1 632 3e-180
> Ahg474567 jgi|Araly1|474567|fgenesh2_kg.1__4521__AT1G55130.1
Length=2040
Score = 3301 bits (1787), Expect = 0.0
Identities = 1956/2040 (96%), Gaps = 1/2040 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATCAGGATTCGAATCTCCGGAACTCTCTTACTATCTTTCTTATTCTTCTCCACT 60
|||||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||| |||
Sbjct 1 ATGGCGATCATGATTCGAATCTACGGCACTCTCTTACTCTCTTTCTTATTCTTCTCAACT 60
Query 61 CTTCACGCTTTCTATCTTCCCGGTGTCGCTCCTCGCGATTTTCAGAAGGGTGATCCTCTT 120
||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||
Sbjct 61 CTTCACGCTTTCTATCTTCCCGGTGTCGCTCCTCGGGATTTCCAAAAGGGTGATCCTCTA 120
Query 121 TATGTGAAAGTGAACAAATTATCGTCTACAAAGACTCAGCTTCCTTATGATTTCTACTAC 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TATGTCAAAGTGAACAAATTATCGTCTACAAAGACTCAGCTTCCTTATGATTTCTACTAC 180
Query 181 CTGAATTACTGTAAGCCTCCGAAGATCTTGAATACCGGCGAAAATTTGGGGGAGGTTCTC 240
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 181 CTGAATTACTGTAAGCCTCCGAAGATCTTGAATACCGGTGAAAATTTGGGGGAGGTTCTT 240
Query 241 AGAGGAGATCGCATTGAGAATTCGGTTTATACTTTTGAAATGTTGGAGGATCAGCCCTGT 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGAGGAGATCGCATTGAGAATTCGGTTTATACTTTTGAAATGTTGGAGGATCAGCCCTGT 300
Query 301 AGAGTAGGCTGCCGTGTTAGAGTTGATGCAGAGTCTGCTAAAAATTTCAGGGAAAAGATT 360
|||||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 301 AGAGTAGGTTGCCGTGTTAGAGTCGATGCTGAGTCTGCTAAAAATTTCAGGGAGAAGATT 360
Query 361 GATTATGAATACCGAGCTAATATGATTCTTGATAATCTTCCAGTAGCTGTTCTTCGACAA 420
||| ||||||||||||||||||||||||||||||| ||||| |||||||||||| |||||
Sbjct 361 GATGATGAATACCGAGCTAATATGATTCTTGATAACCTTCCGGTAGCTGTTCTTAGACAA 420
Query 421 AGAAAAGATGGAATTCAGTCAACGACTTATGAGCATGGTTACCGTGTTGGCTTTAAAGGG 480
|||||||||||||||||||| ||||||||||| ||||||| |||||||||||| ||||||
Sbjct 421 AGAAAAGATGGAATTCAGTCGACGACTTATGAACATGGTTTCCGTGTTGGCTTCAAAGGG 480
Query 481 AGTTATGAAGGGAGTAAAGAGAAAAAATACTTTATCCATAACCACTTGAGTTTCCGAGTC 540
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 AGTTACGAAGGGAGTAAAGAGAAAAAATACTTTATCCATAACCATTTGAGTTTCCGAGTC 540
Query 541 ATGTACCACAGAGACCAAGAGTCTGAATCTTCTCGCATTGTTGGTTTTGAGGTTACGCCT 600
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 541 ATGTACCACAGAGATCAAGAGTCTGATTCTTCTCGCATTGTTGGTTTTGAGGTTACGCCT 600
Query 601 AACAGTGTATTGCATGAGTACAAAGAGTGGGATGAAAACAATCCCCAATTAACAACATGC 660
|||||||||||||||||||||||||| ||||||||||| |||| || ||||||||||||
Sbjct 601 AACAGTGTATTGCATGAGTACAAAGATTGGGATGAAAATAATCGTCAGTTAACAACATGC 660
Query 661 AACAAAGACACAAAGAATTTGATCCAAAGCAACACTGTTCCTCAAGAAGTCGAGGAAGGA 720
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 661 AACAAAGACACAAAGAATCTGATCCAAAGCAACACTGTTCCTCAAGAAGTTGAGGAAGGA 720
Query 721 AAAGAAATTGTGTTTACATATGATGTCGCCTTTAAGGAGAGTGTTATCAAATGGGCTTCG 780
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 721 AAAGAAATTGTGTTTACATATGATGTCGCCTTTAAGGAGAGTGAAATCAAATGGGCTTCT 780
Query 781 CGCTGGGACACATACTTGCTTATGAACGATGATCAAATCCACTGGTTTTCAATCATAAAC 840
|| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 781 CGATGGGACACATATTTGCTAATGAACGATGATCAAATCCACTGGTTTTCAATCATAAAC 840
Query 841 TCGCTTATGATTGTCCTTTTCCTCTCTGGAATGGTAGCGATGATCATGATGAGAACTTTA 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TCGCTTATGATTGTCCTTTTCCTCTCTGGAATGGTAGCGATGATCATGATGAGAACTTTA 900
Query 901 TACAAGGATATTTCAAACTACAATCAGCTCGAGACCCAAGACGAGGCTCAGGAAGAAACC 960
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TACAAGGATATTTCAAACTACAATCAGCTCGAGACCCAAGACGAGGCTCAGGAAGAAACA 960
Query 961 GGATGGAAGCTTGTACATGGAGATGTCTTTAGGACGCCCATGAACTCTGGGTTACTGTGT 1020
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 GGATGGAAACTTGTACATGGAGATGTCTTTAGGACGCCCATGAACTCTGGGTTACTGTGT 1020
Query 1021 GTTTATGTCGGCACAGGTGTTCAGATTTTCGGTATGACTCTTGTGACAATGATCTTTGCA 1080
|||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1021 GTTTATGTCGGCACAGGTCTTCAGATTTTTGGTATGACTCTTGTGACAATGATGTTTGCA 1080
Query 1081 TTGCTGGGCTTCTTATCTCCATCCAACAGAGGAGGGCTCACGACTGCCATGGTTCTCTTA 1140
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1081 TTGCTGGGCTTCTTATCTCCATCCAACAGAGGAGGGCTCATGACTGCCATGGTTCTCTTA 1140
Query 1141 TGGGTATTCATGGGCATATTTGCTGGTTACTCATCTTCTCGTCTTCACAAAATGTTCAAA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 TGGGTATTCATGGGCATATTTGCTGGTTACTCATCTTCTCGTCTTCACAAAATGTTCAAA 1200
Query 1201 GGGAATGAGTGGAAAAGAATCACCTTGAAGACTGCATTCATGTTTCCCGGTATACTCTTC 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 GGGAATGAGTGGAAAAGAATCACCTTGAAGACTGCATTCATGTTTCCCGGTATACTCTTC 1260
Query 1261 GCGATCTTCTTCGTTCTCAACACACTCATATGGGGAGAACGATCATCTGGAGCCATTCCC 1320
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1261 GCGATCTTCTTCGTTCTCAACACACTCATATGGGGAGAACGATCATCCGGAGCCATTCCC 1320
Query 1321 TTTAGTACAATGTTTGCTCTGGTCTGTCTCTGGTTTGGAATCTCTGTCCCACTAGTCTTC 1380
||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TTTGGTACAATGTTTGCTCTTGTCTGTCTCTGGTTTGGAATCTCTGTCCCACTAGTCTTC 1380
Query 1381 ATTGGTAGCTACCTCGGTCACAAAAAACCAGCAATCGAAGATCCAGTCAAAACTAACAAG 1440
|| |||||||| ||||||||||||||| | |||||||||||||| |||||||||||||||
Sbjct 1381 ATAGGTAGCTATCTCGGTCACAAAAAATCTGCAATCGAAGATCCGGTCAAAACTAACAAG 1440
Query 1441 ATCCCGAGACAAGTACCAGAGCAACCTTGGTACATGAAACCTGGGTTTTCCATACTAATT 1500
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1441 ATCCCGAGACAAGTACCAGAGCAACCTTGGTACATGAAACCTGTTTTTTCCATACTAATT 1500
Query 1501 GGAGGCATCCTTCCATTTGGAGCAGTCTTCATCGAGCTCTTCTTCATCCTAACATCAATC 1560
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1501 GGAGGAATCCTTCCATTTGGAGCAGTCTTCATTGAGCTCTTCTTCATCCTAACATCAATC 1560
Query 1561 TGGCTCAATCAATTCTACTACATCTTCGGATTCCTCTTCATCGTGTTCTTGATCTTGATT 1620
|||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1561 TGGCTCAACCAATTCTACTACATTTTTGGATTCCTCTTCATCGTGTTCTTGATCTTGATC 1620
Query 1621 GTGACCTGCGCAGAGATCACAATTGTCCTCTGCTACTTTCAGCTCTGCAGTGAAGACTAC 1680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 GTGACCTGCGCAGAGATCACAATTGTCCTCTGCTACTTTCAGCTCTGCAGTGAAGACTAC 1680
Query 1681 AATTGGTGTTGGAGAGCATACCTCACATCAGGCTCATCTTCACTTTACCTCTTCCTCTAC 1740
|||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1681 AATTGGTGGTGGAGAGCTTACCTCACATCAGGCTCATCCTCACTTTACCTCTTCCTTTAC 1740
Query 1741 TCCGTCTTCTACTTCTTCACAAAGCTTGAGATCTCAAAACTGGTATCAGGAGTGCTCTAC 1800
|| |||||||||||||||||||||||||||||||||||||| || |||||| ||||||||
Sbjct 1741 TCGGTCTTCTACTTCTTCACAAAGCTTGAGATCTCAAAACTTGTCTCAGGATTGCTCTAC 1800
Query 1801 TTCGGGTACATGATCATTATCTCTTACTCGTTTTTCGTGCTAACCGGCTCAATCGGTTTC 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1801 TTCGGGTACATGATCATTATCTCTTACTCGTTTTTCGTGCTAACCGGCTCAATCGGTTTC 1860
Query 1861 TACGCATGTTTGTGGTTCGTTAGAAAGATCTACTCCTCAGTGAAGATTGACTGAGATT-A 1919
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1861 TACGCATGTTTATGGTTCGTTAGAAAGATCTACTCCTCGGTGAAGATTGACTGAGATTTA 1920
Query 1920 GTTAAATTGACATAACTTTTGATGCCTCTTGAGGTTTTGTTGGGTGGTTTAGTTGTAGTT 1979
| |||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||
Sbjct 1921 GATAAAATGACATAACTTTTGATGCCTCTTGAGGTTTTGTTGGATGGTTTAGTCGTAGTT 1980
Query 1980 GAAACAAATATTTTACCAAACCTTTGTAATGTTTTGATGAATGGATAATATATTCAAAAC 2039
|||||||| | ||||||||| |||||||| |||||||||||||||| || ||||||||||
Sbjct 1981 GAAACAAAAAATTTACCAAATCTTTGTAACGTTTTGATGAATGGATCATGTATTCAAAAC 2040
> Ahg478776 jgi|Araly1|478776|fgenesh2_kg.3__1477__AT3G13772.1
Length=2098
Score = 2111 bits (1143), Expect = 0.0
Identities = 1665/1917 (87%), Gaps = 35/1917 (2%)
Strand=Plus/Plus
Query 14 TTCGAATCTCCGGAACTCTCTTACTATCTTTCTTAT-TC-TTCTCCACTCT-TCACG-CT 69
||||| ||| || ||||||||||| || || || | || |||||| | | || || ||
Sbjct 26 TTCGATTCTACGCCACTCTCTTACTCTC-TT-TTCTCTCTTTCTCC-TTATCTCGCGCCT 82
Query 70 TTCTATCTTCCCGGTGTCGCTCCTCGCGATTTTCAGAAGGGTGATCCTCTTTATGTGAAA 129
|| ||||| || || ||||||||||| ||||| ||||||||||||||||||||||| |||
Sbjct 83 TT-TATCTACCAGGAGTCGCTCCTCGTGATTTCCAGAAGGGTGATCCTCTTTATGTTAAA 141
Query 130 GTGAACAAATTATCGTCTACAAAGACTCAGCTTCCTTATGATTTCTACTACCTGAATTAC 189
||||||||||| ||||| ||||||||||| ||||||||||| | ||||||||||||||||
Sbjct 142 GTGAACAAATTGTCGTCCACAAAGACTCAACTTCCTTATGACTACTACTACCTGAATTAC 201
Query 190 TGTAAGCCTCCGAAGATCTTGAATACCGGC-GAAAATTTGGGGGAGGTTCTCAGAGGAGA 248
||||||||||| ||||||||||| | || |||||||| ||||||||||||||||||||
Sbjct 202 TGTAAGCCTCCTAAGATCTTGAACA-ATGCTGAAAATTTAGGGGAGGTTCTCAGAGGAGA 260
Query 249 TCGCATTGAGAATTCGGTTTATACTTTTGAAATG-TTGGAGGATCAGCCCTGTAGAGTAG 307
|||||||||||||| |||||||||||| ||||| || || ||||||||||| | |||||
Sbjct 261 CCGCATTGAGAATTCCGTTTATACTTTTCAAATGCTT-GAAGATCAGCCCTGCAAAGTAG 319
Query 308 GCTGCCGTGTTAGAGTTGATGCAGAGTCTGCTAAAAATTTCAGGGAAAAGATTGATTATG 367
| |||||||||| | ||||||| || || | |||||||||| ||||||||||||| |||
Sbjct 320 GTTGCCGTGTTAAACTTGATGCTGACTCCACCAAAAATTTCAAGGAAAAGATTGATGATG 379
Query 368 AATACCGAGCTAATATGATTCTTGATAATCTTCCAGTAGCTGTTCTTCGACAAAGAAAAG 427
||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| | ||
Sbjct 380 AATACCGGGCTAATATGATTCTTGATAATCTTCCAGTAGCTGTTCTTAGACAAAGGAGAG 439
Query 428 ATGGAATTCAGTCAACGACTTATGAGCATGGTTACCGTGTTGGCTTTAAAGGGAGTTATG 487
|||||| ||| |||||||||||||| || |||| ||||||||||| |||||||||||||
Sbjct 440 ATGGAAGTCAATCAACGACTTATGAACACGGTTTTCGTGTTGGCTTCAAAGGGAGTTATG 499
Query 488 AAGGGAGTAAAGAGAAAAAATACTTTATCCATAACCACTTGAGTTTCCGAGTCATGTACC 547
||||||| |||||| | ||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 500 AAGGGAGCAAAGAGGAGAAATACTTTATACATAATCACTTGAGCTTCCGAGTCATGTACC 559
Query 548 ACAGAGACCAAGAGTCTGAATCTTCTCGCATTGTTGGTTTTGAGGTTACGCCTAACAGTG 607
||||||||||||||||||| ||| |||| |||||||| |||||||||||||||||||||
Sbjct 560 ACAGAGACCAAGAGTCTGATTCTGCTCGAATTGTTGGATTTGAGGTTACGCCTAACAGTA 619
Query 608 TATTGCATGAGTACAAAGAGTGGGATGAAAACAATCCCCAATTAACAACATGCAACAAAG 667
| |||||||| ||||| |||||||||||||| ||||| || ||||||||||| || || |
Sbjct 620 TCTTGCATGAATACAAGGAGTGGGATGAAAAAAATCCTCAGTTAACAACATGTAATAAGG 679
Query 668 ACACAAAGAATTTGATCCAAAGCAACACTGTTCCTCAAGAAGTCGAGGAAGGAAAAGAAA 727
||||||| ||| |||||||| |||||||||| ||||||||||| ||| ||||||||||||
Sbjct 680 ACACAAAAAATCTGATCCAAGGCAACACTGTCCCTCAAGAAGTTGAGCAAGGAAAAGAAA 739
Query 728 TTGTGTTTACATATGATGTCGCCTTTAAGGAGAGTGTTATCAAATGGGCTTCGCGCTGGG 787
| ||||||||||||||||| | | || |||| |||||||||||||| || ||||
Sbjct 740 TAGTGTTTACATATGATGT---C--T--CGAAAGTGAAATCAAATGGGCTTCTCGGTGGG 792
Query 788 ACACATA-CTTGCTTATGAACGATGATCAAATCCACTGGTTTTCAATCATAAACTCGCTT 846
|||| || ||| || ||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 793 ACACGTACCTTTCTCATGAACGATGATCAAATCCACTGGTTTTCCATCATAAATTCACTT 852
Query 847 ATGATTGTCCTTTTCCTCTCTGGAATGGTAGCGATGATCATGATGAGAACTTTATACAAG 906
||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||
Sbjct 853 ATGATTGTCCTTTTCCTTTCTGGAATGGTAGCCATGATCATGATGAGAACTCTATACAAG 912
Query 907 GATATTTCAAACTACAATCAGCTCGAGACCCAAGACGAGGCTCAGGAAGAAACCGGATGG 966
||||| ||||||||||||||||| ||||||||||| ||||| |||||||| || ||||||
Sbjct 913 GATATCTCAAACTACAATCAGCTTGAGACCCAAGATGAGGCCCAGGAAGAGACTGGATGG 972
Query 967 AAGCTTGTACATGGAGATGTCTTTAGGACGCCCATGAACTCTGGGTTACTGTGTGTTTAT 1026
||||||||||| ||||||||||| ||| | || |||||||||| ||| |||||||||||
Sbjct 973 AAGCTTGTACACGGAGATGTCTTCAGGCCACCGGTGAACTCTGGATTATTGTGTGTTTAT 1032
Query 1027 GTCGGCACAGGTGTTCAGATTTTCGGTATGACTCTTGTGACAATGATCTTTGCATTGCTG 1086
|| || |||||||||||||| ||||| ||| | || || |||||||| ||||| |||||
Sbjct 1033 GTTGGTACAGGTGTTCAGATCTTCGGGATGTCACTGGTTACAATGATGTTTGCGTTGCTT 1092
Query 1087 GGCTTCTTATCTCCATCCAACAGAGGAGGGCTCACGACTGCCATGGTTCTCTTATGGGTA 1146
|||||||||||||||||||||||||||||||| | |||||||||||||||||| |||||
Sbjct 1093 GGCTTCTTATCTCCATCCAACAGAGGAGGGCTTATGACTGCCATGGTTCTCTTGTGGGTT 1152
Query 1147 TTCATGGGCATATTTGCTGGTTACTCATCTTCTCGTCTTCACAAAATGTTCAAAGGGAAT 1206
|||||||| ||||| ||||||||||| || ||||| |||||||||||||||||||| ||
Sbjct 1153 TTCATGGGAATATTCGCTGGTTACTCCTCGTCTCGCCTTCACAAAATGTTCAAAGGAAAC 1212
Query 1207 GAGTGGAAAAGAATCACCTTGAAGACTGCATTCATGTTTCCCGGTATACTCTTCGCGATC 1266
||||||| ||||| |||||||||||||||||||||||||| ||||| || || || |||
Sbjct 1213 AAGTGGAAGAGAATGACCTTGAAGACTGCATTCATGTTTCCGGGTATCCTTTTTGCTATC 1272
Query 1267 TTCTTCGTTCTCAACACACTCATATGGGGAGAACGA-TCATCTGGAGCCATTCCCTTTAG 1325
||||| ||||| || | || || |||||||| | | |||||||||||||| || ||| |
Sbjct 1273 TTCTTTGTTCTGAATGCCCTTATTTGGGGAGAGC-AGTCATCTGGAGCCATACCATTTGG 1331
Query 1326 TACAATGTTTGCTCTGGTCTGTCTCTGGTTTGGAATCTCTGTCCCACTAGTCTTCATTGG 1385
||||||||||||||| |||| ||||||||||| ||||| ||||||||||||||| ||||
Sbjct 1332 TACAATGTTTGCTCTCTTCTGCCTCTGGTTTGGCATCTCAGTCCCACTAGTCTTCGTTGG 1391
Query 1386 TAGCTACCTCGGTCACAAAAAACCAGCAATCGAAGATCCAGTCAAAACTAACAAGATCCC 1445
|||||| || ||| |||| || |||||||| ||||||||||||||||| |||||||||||
Sbjct 1392 TAGCTATCTGGGTTACAAGAAGCCAGCAATTGAAGATCCAGTCAAAACAAACAAGATCCC 1451
Query 1446 GAGACAAGTACCAGAGCAACCTTGGTACATGAAACCTGGGTTT-TCCATACTAATTGGAG 1504
|||||||||||||||||| || |||||||||||||| | ||| ||||||||||||||||
Sbjct 1452 GAGACAAGTACCAGAGCAGCCGTGGTACATGAAACC-AGTTTTCTCCATACTAATTGGAG 1510
Query 1505 GCATCCTTCCATTTGGAGCAGTCTTCATCGAGCTCTTCTTCATCCTAACATCAATCTGGC 1564
||||||| || ||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1511 GCATCCTCCCGTTTGGAGCAGTCTTCATCGAGCTCTTCTTCATCCTGACATCAATATGGC 1570
Query 1565 TCAATCAATTCTACTACATCTTCGGATTCCTCTTCATCGTGTTCTTGATCTTGATTGTGA 1624
| || || ||||||||||||||||| ||||| || || ||||||||||||||||| || |
Sbjct 1571 TGAACCAGTTCTACTACATCTTCGGGTTCCTTTTTATAGTGTTCTTGATCTTGATCGTCA 1630
Query 1625 CCTGCGCAGAGATCACAATTGTCCTCTGCTACTTTC-AGCTCTGCAGTGAAGACTACAAT 1683
|||| |||||||| ||| | || ||||| || |||| |||| || || |||||||||||
Sbjct 1631 CCTGTGCAGAGATTACAGTGGTGCTCTGTTA-TTTCCAGCTTTGTAGCGAAGACTACAAC 1689
Query 1684 TGGTGTTGGAGAGCATACCTCACAT-CAGGCTCATCTTCACTTT--ACCTCTTCCTCTAC 1740
||||| |||||||| ||| | || | | |||||||| | |||| ||||||||||||||
Sbjct 1690 TGGTGGTGGAGAGCTTACTTAAC-TGCGGGCTCATC--CGCTTTCTACCTCTTCCTCTAC 1746
Query 1741 TCCGTCTTCTACTTCTTCACAAAGCTTG-AGATCTCAAAACTGGTATCAGGAGTGCTCTA 1799
|| |||||||||||||||||||| ||| ||||| |||| || ||||| ||| |||||||
Sbjct 1747 TCAATCTTCTACTTCTTCACAAAG-TTGGAGATCACAAAGCTAGTATCGGGAATGCTCTA 1805
Query 1800 CTTCGGGTACATGATCATTATCTCTTACTCGTTTTTCGTGCTAACCGGCTCAATCGGTTT 1859
|||||||||||||||||| ||||||||| | || ||||| ||||| ||| | ||||||||
Sbjct 1806 CTTCGGGTACATGATCATCATCTCTTACGCATTCTTCGTCCTAACTGGCACTATCGGTTT 1865
Query 1860 CTACGCATGTTTGTGGTTCGTTAGAAAGATCTACTCCTCAGTGAAGATTGACTGAGA 1916
||| || || || ||||| || ||||||||||||||||| ||||||||||||| |||
Sbjct 1866 CTATGCTTGCTTCTGGTTTGTGAGAAAGATCTACTCCTCGGTGAAGATTGACT-AGA 1921
> Ahg942065 jgi|Araly1|942065|scaffold_602609.1
Length=1975
Score = 699 bits (378), Expect = 0.0
Identities = 945/1212 (78%), Gaps = 66/1212 (5%)
Strand=Plus/Plus
Query 700 CCTCAAGAAGTCGAGGAAGGAA-AA-GAAATTGTGTTTACATATGATGTCGCCTTTAAGG 757
|||||||||||||| || || || |||||| | || ||||||||||| | |||| |||
Sbjct 741 CCTCAAGAAGTCGA--AAATAAGAAGGAAATTATCTTCACATATGATGTTGACTTTCAGG 798
Query 758 AGAGTGTTA-TCAAATGGGCTTCGCGCTGGGACACATA-CTTGCTTATGAACGATGATCA 815
| |||| | | || ||||| || | ||||| | || ||| || |||| ||| ||||
Sbjct 799 AAAGTG-AAGTGAAGTGGGCGTCTAGATGGGATGCTTATCTT-CTGATGAGCGACAATCA 856
Query 816 AATCCACTGGTTTTCAATCATAAACTCGCTTATGATTGTCCTTTTCCTCTCTGGAATGGT 875
||| |||||||| || ||| | ||||| || ||||| ||||| ||||| ||||| |||||
Sbjct 857 AATTCACTGGTTCTCTATCGTCAACTCTCTGATGATCGTCCTCTTCCTTTCTGGTATGGT 916
Query 876 AGCGATGATCATGATGA-GAACTTTATACAAG-GATATTTCAAACTACAATC-AGCTCGA 932
||||||||| ||| | | || | || ||| | || |||||| ||||| | |||| ||
Sbjct 917 AGCGATGATTATGCTAAGGACCCTT-TAC-CGTGACATTTCACGGTACAA-CGAGCTTGA 973
Query 933 GACCCAAGACGAGGCTCAGGAAGAAACCGGATGGAAGCTTGTACATGGAGATGTCTTT-A 991
||| ||||| || ||||| ||||| || || ||||| || || ||||| ||||| ||| |
Sbjct 974 GACTCAAGAGGAAGCTCAAGAAGAGACTGGGTGGAAACTCGTCCATGGCGATGT-TTTCA 1032
Query 992 GGACGCCCATGAACTCTGGGT-TACTGTGTGTTTATGTCGGCACAGGTGTTCAGAT-TTT 1049
|| | || | || || | | | || || || ||||| ||||||||||| ||| | |||
Sbjct 1033 GGCCTCCAACCAATTC-AGATCTTCTCTGCGTCTATGTTGGCACAGGTGTCCAG-TGTTT 1090
Query 1050 CGGTATGACT-CTTGTGACAATGATCTTTG-CATTGCT-GGGCTTCTTATCTCCATCCAA 1106
|| ||| | ||||| || |||||||| | || |||| || ||| |||| || |||||
Sbjct 1091 AGGCATG-GTACTTGTCACTATGATCTTCGCCA-TGCTCGGATTTC-TATCACCTTCCAA 1147
Query 1107 CAGAGGAGGGCTCACGACTGCCATGGTTC-TCTTATGGGTATTCATGGGCATATTTGCTG 1165
| | ||||| || | ||| |||||| | | || | ||||| ||||||||| | ||||| |
Sbjct 1148 CCGTGGAGGTCTTATGACAGCCATGCTCCTTC-TCTGGGTCTTCATGGGCCTCTTTGCCG 1206
Query 1166 GTTACTCATCTTCTCGTCTTC-ACAAAATGTTCAAAGGGAA-TGAGTGGAAAAGAATCAC 1223
||||| | ||||| |||| || |||||||||||||| |||| || ||||| ||||| |
Sbjct 1207 GTTACGCCTCTTCACGTC-TCTACAAAATGTTCAAA-GGAACAGAATGGAAGAGAATTGC 1264
Query 1224 CTTGAAG-ACTGCATTCATGTTTCCCGGTA-TAC-TCTTC-GCGATCTTCTTCGTTCTCA 1279
||| || || || ||| || ||||| | | | | || || || |||||||| || || |
Sbjct 1265 CTT-CAGAACAGCCTTCTTG-TTCCCTGCAGT-CGTC-TCAGCTATCTTCTTTGTCCTAA 1320
Query 1280 ACACACTCATATGGGGAGAACGATCATCTGGAGCCATTCCCTTTAGTACAATGTTTGCTC 1339
|| ||||||| |||||| || |||||||||||| |||||||| | |||||||||||||
Sbjct 1321 ACGCACTCATCTGGGGACAAAAATCATCTGGAGCTGTTCCCTTTGGAACAATGTTTGCTC 1380
Query 1340 TGGTCTGT-CTCTGGTTTGGAATCTCTGTCCCACTAGTCTTCATTGGTAGC-TACCTCGG 1397
|| ||| | ||||||||||||||||| ||||| || ||||| |||| || ||||||||
Sbjct 1381 TGATCT-TCCTCTGGTTTGGAATCTCGGTCCCTCTTGTCTTTGTTGG-CGCGTACCTCGG 1438
Query 1398 -TCACAAAAAACCAGCAATCGAAGATCCAGTCAAAACTAACAAGATCCCGA-GACAAGTA 1455
| ||| || ||| || | || ||||| || ||||| ||||| ||||| | | ||| |
Sbjct 1439 AT-TCAAGAAGCCACCACTTGATGATCCCGTGAAAACCAACAAAATCCC-ACGTCAAATC 1496
Query 1456 CCAGAGCAACCTTGGTACATGAAACCTGGGTTTTC-C-ATACTAATTGGAGGCATCCTT- 1512
||||||||| ||||||||||| |||| |||||| | || || |||||||| || |||
Sbjct 1497 CCAGAGCAAGCTTGGTACATG-AACC-CAGTTTTCTCAATCCTCATTGGAGGAAT-CTTA 1553
Query 1513 CCATTTGGAGCAGTCTTCATCGAGCTCTTCTTCATCCTAACATCAATCTGGCTCAATCAA 1572
||||| || ||||||||||||||||||||||||||||||||||| |||||||| || ||
Sbjct 1554 CCATTCGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTAACATCCATCTGGCTTAACCAG 1613
Query 1573 TTCTACTACATCTTCGGATTCCTCTTCATCGTGTTCT-TGATC-TTGATTGTGACCTGCG 1630
||||||||||||||||||||||||||| |||| || | ||||| || || || || ||||
Sbjct 1614 TTCTACTACATCTTCGGATTCCTCTTCCTCGTCTT-TGTGATCCTT-ATGGTCACATGCG 1671
Query 1631 CAGAGATCACAATTGTCCTCTGCTACTTTCAGCTCTGCAGTGAAGACTA-CAATTGGTGT 1689
| |||||||| ||||| ||||||||||| ||||| |||||||||||||| | | ||||
Sbjct 1672 CTGAGATCACCATTGTTCTCTGCTACTTCCAGCTTTGCAGTGAAGACTATCTCT-GGTGG 1730
Query 1690 TGGAGAG-CATACCTCACATCAGGCTCATCTTCACTTTACCTCTTCCTCTACTCCGTCTT 1748
||||| | | |||||||| ||||| || ||| | | || |||||||||||| | | |||
Sbjct 1731 TGGAG-GTCTTACCTCACCTCAGGTTCTTCTGCGGTCTATCTCTTCCTCTACGCAGCCTT 1789
Query 1749 CTACTTCTTCACAAAGCTTGAGATCTCAAAACTGGTATCAGG--AGTGCTCTACTTCGGG 1806
||| |||||||||||||| ||||| | || || || || || | |||||||||||||
Sbjct 1790 CTATTTCTTCACAAAGCTCCAGATCACTAAGCTCGTCTC-GGCCA-TGCTCTACTTCGGA 1847
Query 1807 TACATGATCATTATCTCTTACTCGTTTTTCGTGCTAACCGGCTCAATCGGTTTCTACGCA 1866
|||||| | || ||||||| ||||||| ||||| ||||| ||||||| ||||||||
Sbjct 1848 TACATGCTTATCGCCTCTTACGCGTTTTTTGTGCTGACCGGAACAATCGGGTTCTACGCT 1907
Query 1867 TGTTTGTGGTTC 1878
||| | ||||||
Sbjct 1908 TGTCTCTGGTTC 1919
> Ahg940557 jgi|Araly1|940557|scaffold_601101.1
Length=1995
Score = 632 bits (342), Expect = 3e-180
Identities = 937/1216 (77%), Gaps = 74/1216 (6%)
Strand=Plus/Plus
Query 700 CCTCAAGAAGTCG-AGGAAGGAAAAGAAATTGTGTTTACATATGATGTCGCCTTT-AAGG 757
||||||||||| | | || | || || ||| | || ||||||||||||| ||| |||
Sbjct 755 CCTCAAGAAGTTGAACAAAAG-AAGGAGATTATCTTCACATATGATGTCG-ATTTCCAGG 812
Query 758 AGAGTGTTA-TCAAATGGGCTTCGCGCTGGGACACATA-CTTGCTTATGAACGATGATCA 815
| |||| | | || ||||| || | ||||| || || ||| ||||||| ||| | ||
Sbjct 813 AAAGTG-AAGTGAAGTGGGCATCTAGATGGGATACTTATCTT-CTTATGAGTGATAACCA 870
Query 816 AATCCACTGGTTTTCAATCATAAACTCGCTTATGATTGTCCTTTTCCTCTCTGGAATGGT 875
||| |||||||| || ||| | || || || ||||| ||||| ||||| ||||| |||||
Sbjct 871 AATTCACTGGTTCTCTATCGTCAATTCTCTGATGATCGTCCTATTCCTGTCTGGTATGGT 930
Query 876 AGCGATGATCATGATGA-GAACTTTATACAAG-GATATTTCA-AACTACAATC-AGCTCG 931
|| ||||| ||| ||| || | || ||| | || |||||| | ||||| | ||||||
Sbjct 931 GGCAATGATAATGCTGAGGACCCTT-TAC-CGTGACATTTCACGA-TACAA-CGAGCTCG 986
Query 932 AGACCCAAGACGAGGCTCAGGAAGAAACCGGATGGAAGCTTGTACATGGAGATGTCTTT- 990
|||| ||||| || ||||| ||||| || |||||||||||||| ||||| ||||| |||
Sbjct 987 AGACTCAAGAAGAAGCTCAAGAAGAGACAGGATGGAAGCTTGTCCATGGTGATGT-TTTC 1045
Query 991 AGGAC-GCCCATGAACTCTGGGT-TACTGTGTGTTTATGTCGGCACAGGTGTTCAGAT-T 1047
||| | || | || ||| | | | || || ||||| || || ||||| || ||| | |
Sbjct 1046 AGG-CTTCCTACCAATTCT-GATCTGCTCTGCGTTTACGTTGGAACAGGGGTCCAG-TGT 1102
Query 1048 TTCGGTAT-G-ACTCTTGTGACAATGATCTTTG-CATTGCT-GGGCTTCTTATCTCCATC 1103
| || || | | | |||| ||||||||||| | || |||| || ||| | || || ||
Sbjct 1103 CTAGGCATGGTA-T-TTGTCACAATGATCTTCGCCA-TGCTCGGATTTC-TCTCCCCTTC 1158
Query 1104 CAA-CAGAGGAGGGCTCACGACTGCCATGGTTC-T-CTTATGGGTATTCATGGGCA-TAT 1159
||| | | || || || | |||||| || | || | | | ||||| |||||||| | | |
Sbjct 1159 CAATC-GGGGTGGTCTGATGACTGCAAT-GCTCTTGC-TCTGGGTCTTCATGGG-ACTCT 1214
Query 1160 TTGCTGGTTACTCATCTTCTCGTCTTC-ACAAAATGTTCAAAGGGAA-TGAGTGGAAAAG 1217
||||||||||| | ||||| |||| || |||||||||||||| |||| |||||||| ||
Sbjct 1215 TTGCTGGTTACGCCTCTTCACGTC-TCTACAAAATGTTCAAA-GGAACAGAGTGGAAGAG 1272
Query 1218 AATCACCTTGAAG-ACTGCATTCATGTTTCCCGGTA-TACTCTTC-GCGATCTTCTTCGT 1274
|||| ||| || || || ||| ||||| || | | | | ||| || |||||||| ||
Sbjct 1273 AATC-GCTTTCAGAACAGCCTTCTTGTTT-CCTGCAGTTGT-TTCAGCAATCTTCTTTGT 1329
Query 1275 TCTCAACACACTCATATGGGG--AGAACGATCATCTGGAGCCATTCCCTTTAGTACAATG 1332
|| ||| | ||||| ||||| |||| | ||||| || || | |||||| | ||||||
Sbjct 1330 CCTAAACGCTCTCATCTGGGGACAGAA-G-TCATCCGGGGCTGTCCCCTTTGGGACAATG 1387
Query 1333 TTTG-CTCTGGTCTGT-CTCTGGTTTGGAATCTCTGTCCCACTAGTCTTCATTGGTAGCT 1390
|||| || || ||| | ||||||||||| ||||| || || || ||||| |||| | |
Sbjct 1388 TTTGCCT-TGATCT-TCCTCTGGTTTGGCATCTCAGTTCCTCTCGTCTTTGTTGGGGGTT 1445
Query 1391 ACCTC-GGTCACAAAAAACCAGCAATCGAAGATCCAGTCAAAACTAACAAGATCCCGAGA 1449
|| || ||| ||| || |||||| | || || ||||| ||||| ||||| ||||||||
Sbjct 1446 ACATCGGGT-TCAAGAAGCCAGCAGTTGATGACCCAGTGAAAACCAACAAAATCCCGAGG 1504
Query 1450 CAAGTACCAGAGCAACCTTGGTACATGAAACCTGGGTTTTC-C-ATACTAATTGGAGGCA 1507
||| | ||||||||| ||||||||||| |||| ||||||| | || || |||||||| |
Sbjct 1505 CAAATTCCAGAGCAAGCTTGGTACATG-AACC-CGGTTTTCTCAATCCTCATTGGAGGAA 1562
Query 1508 TCCTT-CCATTTGGAGCAGTCTTCATCGAGCTCTTCTTCATCCTAACATCAATCTGGCTC 1566
| ||| || ||||| ||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 1563 T-CTTACCGTTTGGTGCAGTCTTCATCGAGCTCTTCTTCATCCTCACATCCATCTGGCTC 1621
Query 1567 AATCAATTCTACTACATCTTCGGATTCCTCTTCATCGTGTTCT-TGATCTTGATTGTGAC 1625
||||| |||||||||||||| || ||||||||| |||| || | | ||| | || |||||
Sbjct 1622 AATCAGTTCTACTACATCTTTGGGTTCCTCTTCCTCGTCTT-TGTAATCCTCATCGTGAC 1680
Query 1626 CTGCGCAGAGATCACAATTGTCCTCTGCTACTTTCAGCTCTGCAGTGAAGACTACAATTG 1685
||||| ||||| || | || ||||||||||| ||||| |||||||| |||||| |||
Sbjct 1681 TTGCGCCGAGATAACCGTAGTACTCTGCTACTTCCAGCTTTGCAGTGAGGACTACCTTTG 1740
Query 1686 GTGTTGGAGAGCATACCTCACATCAGGCTCATCTTCACTTTACCTCTTCCTCTACTCCGT 1745
||| |||||| | |||||||||||||||||||| | || ||||||||||||||| ||
Sbjct 1741 GTGGTGGAGATCTTACCTCACATCAGGCTCATCAGCTCTCTACCTCTTCCTCTACGCCA- 1799
Query 1746 C-TTCTACTTCTTCACAAAGCTTGAGATCTCAAAACTGGTATCAG-GAGTGCTCTACTTC 1803
| ||||||||||||||||||||| |||| | |||||||| || | || |||| |||||
Sbjct 1800 CGTTCTACTTCTTCACAAAGCTTCAGATAACCAAACTGGTCTCGGCGA-TGCTTTACTTT 1858
Query 1804 GGGTACATGATCATTATC-TCTTACTCGTTTTTCGTGCTAACCGGCTCAATCGGTTTCTA 1862
||||||||| |||| | |||||| | ||||| ||||| || || |||| || |||||
Sbjct 1859 GGGTACATGCTCATCG-CGTCTTACGCATTTTTTGTGCTCACAGGAACAATAGGGTTCTA 1917
Query 1863 CGCATGTTTGTGGTTC 1878
|| ||| | ||||||
Sbjct 1918 TGCTTGTCTCTGGTTC 1933
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76751843675
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5