BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55140.1
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
Ahg314742 jgi|Araly1|314742|fgenesh1_pm.C_scaffold_1003522 621 2e-177
> Ahg314742 jgi|Araly1|314742|fgenesh1_pm.C_scaffold_1003522
Length=864
Score = 621 bits (336), Expect = 2e-177
Identities = 363/376 (97%), Gaps = 2/376 (1%)
Strand=Plus/Plus
Query 356 ATATATGCTCGTAGGCATTTTCTTTTTCCTCCACTTAGTATTGAAGAATATAATGACCGT 415
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 490 ATATATGCTCGTCGGCATTTTCTTTTTCCTCCACTTACTATTGAAGAATATAATGACCGT 549
Query 416 GTTAGAGCAGTGGTGCGATGTGAAGCACAATATGCTTTGCTGCAGAAGCTTGTTGATGAT 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 550 GTTAGAGCAGTGGTGCGATGTGAAGCACAATATGCTTTGCTGCAGAAGCTTGTTGATGAT 609
Query 476 GACTTCTTAACGAAAGATGAAAGAGATATACTTCGGTGGGGAAAAAACGTAGGCTCGGTT 535
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 610 GACTTCTTAACGAAAGATGAAAGGGATGTACTTCGGTGGGGAAAAAACGTAGGCTCGGTT 669
Query 536 AAAACACGGTCAACTAGACGTGCCGGTGTTGCTGTTTATAACAAGGCCTCATCATTGGAA 595
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 670 AAAACACGGTCAACTAGACGTGCTGGTGTTGCTGTTTATAACAAGGCCTCTTCATTGGAA 729
Query 596 ACACTAATTGGGTATTTGTATCTATCAAACGGGAAAAGACTGGAAGAAATGATGCAGAAG 655
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct 730 ACACTAATTGGGTATTTGTATCTATCAAACGGGAAAAGATTGGAAGAAATAATGCAGAAG 789
Query 656 CTAGGATTCTCAAGTGGTTCTTCAACAGAGAGAATGGTTAAGGAAGCTGGCTCA-AACAA 714
|||||||||||||||||||||||||||||||||||| |||||||||||||| | || ||
Sbjct 790 CTAGGATTCTCAAGTGGTTCTTCAACAGAGAGAATGATTAAGGAAGCTGGCA-AGAATAA 848
Query 715 ACCATCTTTCAAATAA 730
||||||||||||||||
Sbjct 849 ACCATCTTTCAAATAA 864
Score = 435 bits (235), Expect = 3e-121
Identities = 316/351 (90%), Gaps = 21/351 (6%)
Strand=Plus/Plus
Query 17 ATGGCGATTCTATCAGCGAGCTCTACTATAGTGAGAGCTGCTTTAGATACGCAGCCGAAG 76
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGATTCTATCAGCGAGCTCTACTATCGTGAGAGCTGCTTTAGATACGCAGCCGAAG 60
Query 77 CTCCGATACAATCCCAATGCGCCACGCAATGTTAAGAAAAATTCTAATTTGAGTTCTTTT 136
||||||||||||||||||||||| || ||||| ||| |||| | | || |||||
Sbjct 61 CTCCGATACAATCCCAATGCGCCGCGAAATGTCAAG---AATT-T-A----AGCTCTTTC 111
Query 137 GTTCCACCGTCGTCTCCTTCTTCATCTTCTCCGGCGACAAACTT----A-A-G--C---- 184
||||||||||||||||| |||||||||||||||||||||||||| | | | |
Sbjct 112 GTTCCACCGTCGTCTCCGTCTTCATCTTCTCCGGCGACAAACTTAACAACAGGAACAAAG 171
Query 185 GTCTCCGTTTCTGATTTACTCAAACGTCCTGCAAGCAAAGATATTGGTGATGGATTTGAT 244
||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||||
Sbjct 172 GTCTCCGTTTCTGATTTGCTTAAACGTCCCGCAAGCAAAGATATTGGTGATGGATTTGAT 231
Query 245 GATACTTGTGTTGGATATGAGAAATGGTTTCCAAGTCCACCAAAAGTGGAGAAACCTAGA 304
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 GATACTTGTATTGGATATGAGAAATGGTTTCCAAGTCCACCAAAAGTGGAGAAACCTAGA 291
Query 305 TCTGTCTTCAATGCTGCCTCATTAGCTTATATTGGCGATTCAATCTATGAG 355
|||||||||||||||||||||||||||||||| |||||||| ||||| |||
Sbjct 292 TCTGTCTTCAATGCTGCCTCATTAGCTTATATAGGCGATTCTATCTACGAG 342
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30612702351
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5