BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55180.1
Length=2289
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914645 jgi|Araly1|914645|Al_scaffold_0001_4899 3707 0.0
> Ahg914645 jgi|Araly1|914645|Al_scaffold_0001_4899
Length=2289
Score = 3707 bits (2007), Expect = 0.0
Identities = 2197/2291 (96%), Gaps = 4/2291 (0%)
Strand=Plus/Plus
Query 1 ATGGAGCTTGAAGAACAGAAGAAGTACTTTCATGGAACACTAGAGATTACAATCTTCGAT 60
||||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||
Sbjct 1 ATGGAGCTTGAAGAACAGAAGAAGTTCTTCCATGGAACACTTGAGATTACAATCTTCGAT 60
Query 61 GCAACACCTTTTTCTCCTCCATTTCCTTTCAATTGTATATGTACAAAGCCAAAAGCAGCT 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GCAACACCATTTTCTCCTCCATTTCCTTTCAATTGTATATGTACAAAGCCAAAAGCAGCT 120
Query 121 TACGTGACCATCAAGATAAACAAGAAGAAAGTTGCTAAAACAAGCTCAGAATACGACCGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TACGTGACCATCAAGATAAACAAGAAGAAAGTTGCTAAAACAAGCTCAGAATACGACCGT 180
Query 181 ATTTGGAATCAGACTTTTCAGATCCTCTGCGCTCACCCGGTTACTGACACGACTATCACC 240
| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 181 GTCTGGAATCAGACTTTTCAGATCCTCTGCGCTCACCCGGTTTCTGACACGACCATCACC 240
Query 241 ATCACGCTCAAGACTCGATGTTCTGTTCTCGGAAGATTCCGAATCTCTGCAGAACAGATC 300
|||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||
Sbjct 241 ATCACGCTCAAGACTCGATGTTCTGTTCTCGGAAGAGTCCGGATCTCTGCAGAACAGATC 300
Query 301 CTGACATCTAATTCAGCAGTTATCAACGGGTTCTTCCCTCTGATTGCAGACAATGGGTCA 360
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 301 TTGACATCTGATTCAGCAGTTATCAACGGGTTCTTCCCTCTAATTGCAGACAATGGGTCA 360
Query 361 ACGAAACGTAACTTGAAGCTTAAGTGTTTGATGTGGTTCAGACCGGCTTATCTTGAACCG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACGAAACGTAACTTGAAGCTTAAGTGTTTGATGTGGTTCAGACCGGCTTATCTTGAACCG 420
Query 421 GGATGGTGCAGAGCGCTTGAAGAAGCGTCTTTTCAAGGTATTAGGAACGCAAGCTTCCCT 480
|||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 421 GGATGGTGCAAAGCGCTTGAAGGAGATTCTTTTCAAGGTATTAGGAACGCAAGCTTCCCT 480
Query 481 CAAAGATCGAACTGCAGAGTCGTACTGTATCAAGATGCACACCACAAGGCCACATTTGAT 540
||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct 481 CAAAGATCGAATTGCAGAGTCATACTGTATCAAGATGCACACCACAAGGCCACGTTTGAT 540
Query 541 CCAAGGGTTGATGATGTTCCTTTTAATGCAAGGAATCTATGGGAAGATGTTTACAAAGCG 600
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 541 CCCAGGGTTCATGATGTTCCTTTTAATGCAAGGAATCTATGGGAAGATGTTTACAAAGGG 600
Query 601 ATCGAAAGTGCTAGGCACTTGGTTTACATTGCAGGATGGGCACTAAACCCTAATCTTGTT 660
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 ATCGAAAGTGCTAGGCACTTGGTTTACATCGCAGGATGGGCACTAAACCCTAATCTTGTT 660
Query 661 CTTGTACGCGAC-AACGAAACTGAGATTCCACATGCGGTTGGAGTAACGGTTGGCGAGCT 719
|||||||||||| || |||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 661 CTTGTACGCGACGAA-GAAACTGAGATTCCACATGCAGTTGGAGTAACGATTGGCGAGCT 719
Query 720 TCTGAAACGGAAATCAGAGGAAGGTGTAGCGGTGAGAGTAATGTTGTGGAACGACGAGAC 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 720 TCTGAAACGGAAATCAGAGGAAGGTGTAGCGGTGAGAGTAATGTTGTGGAACGACGAGAC 779
Query 780 GTCTTTACCAATGATCAAGAACAAAGGTGTAATGAGAACAAACGTCGAAAGAGCTCTTGC 839
|||||||| || ||||||||||||||||||||| ||||||||||||||| |||||||||
Sbjct 780 ATCTTTACCGATAATCAAGAACAAAGGTGTAATGCGAACAAACGTCGAAACAGCTCTTGC 839
Query 840 TTACTTCAGAAACACAAACGTTGTTTGTAGATTGTGTCCAAGATTGCACAAAAAGCTCCC 899
|||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||
Sbjct 840 TTACTTCAGAAACACAAATGTTGTTTGTAGACTGTGTCCAAGATCGCACAAAAAGCTCCC 899
Query 900 TACAGCGTTTGCACACCACCAAAAGACAATAACACTGGATACACGGGTGACAAATTCAAG 959
|||||||||||| ||||||||||||||||||||| | |||||||| ||| |||| |||||
Sbjct 900 TACAGCGTTTGCGCACCACCAAAAGACAATAACATTAGATACACGTGTGGCAAACTCAAG 959
Query 960 CACGAAGGAGCGAGAGATCATGAGCTTCCTTGGCGGGTTTGACCTTTGCGATGGTCGATA 1019
||| |||||||||||||| ||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 960 CACTAAGGAGCGAGAGATTATGAGCTTCCTAGGCGGGTTTGATCTTTGCGATGGTCGGTA 1019
Query 1020 TGACACTGAGGAGCATTCACTGTTTCGTACACTCGGAACAGAAGCTGATTTTTACCAGAC 1079
|||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1020 TGACACGGAGGAGCATACACTGTTTCGTACACTCGGAACAGAGGCTGATTTTTACCAGAC 1079
Query 1080 AAGTGTAGCTGGAGCTAAGCTAAGTAGAGGCGGACCAAGAGAGCCATGGCATGATTGCCA 1139
||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 1080 AAGTGTAGCCGGAGCTAAGCTAAGTAAAGGCGGACCAAGAGAGCCATGGCACGATTGCCA 1139
Query 1140 TGTGTCCGTGGTTGGAGGAGCGGCTTGGGATGTCCTGAAGAACTTCGAACAGCGATGGAC 1199
|||||| ||||| |||||||||||||||||||| || ||||||||||||||| |||||||
Sbjct 1140 TGTGTCTGTGGTCGGAGGAGCGGCTTGGGATGTTCTAAAGAACTTCGAACAGAGATGGAC 1199
Query 1200 GAAACAGTGTAACCCTTCCGTGTTGGTTAACACTTCAGGGATCAGAAACTTAGTAAACCT 1259
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GAAACAGTGTAACCCTTCGGTGTTGGTTAACACTTCAGGGATCAGAAACTTAGTAAACCT 1259
Query 1260 AACCGGACCTACTGAGGAAAATAACAGGAAATGGAATGTTCAAGTTCTGAGATCGATAGA 1319
|||||||||||| |||||||||||| || ||||||||||||||||||||||||| |||||
Sbjct 1260 AACCGGACCTACGGAGGAAAATAACCGGTAATGGAATGTTCAAGTTCTGAGATCAATAGA 1319
Query 1320 TCACATATCGGCAACAGAGATGCCAAGAGGTTTGCCGGTAGAGAAGAGTGTACACGATGG 1379
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1320 TCACATATCGGCAACAGAGATGCCAAGAGGTTTGCCGGTAGAGAAGAGTGTACATGATGG 1379
Query 1380 CTATGTCGCAGCAATTCGAAAGGCTGAGAGGTTTATCTACATCGAGAATCAGTATTTCAT 1439
||| ||| | |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1380 CTACGTCACGGCAATTCGAAAGGCTGAGAGGTTTATCTACATTGAGAATCAGTATTTCAT 1439
Query 1440 GGGAAGCTGTGATCATTGGGAGAGCAAGAACGATAAAATCTGCAGCGGATGCACAAACTT 1499
||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1440 GGGAAGCTGTGATCACTGGGGGAGCAAGAACGATAAAATCTGCAGCGGATGCACAAACTT 1499
Query 1500 GATACCTGTCGAAATAGCGTTAAAGATTGCTGCTAAGATACGTGCAAGGGAGAGATTTGC 1559
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1500 GATACCTGTCGAAATAGCGTTAAAGATTGCTGCTAAGATACGCACAAGGGAGAGATTTGC 1559
Query 1560 TGTGTATATAGTCATACCGATGTGGCCGGAAGGGCCACCGGAGAGTGAAACGGTTGAAGA 1619
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1560 AGTGTATATAGTGATACCGATGTGGCCGGAAGGGCCACCAGAGAGTGAAACGGTTGAAGA 1619
Query 1620 GATACTTCATTGGACGAGAGAGACGATGTCAATGATGTATCAGATCATTGGAGAGGCGAT 1679
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1620 GATACTTCATTGGACGAGAGAGACGATGTCAATGATGTATCAGATCATTGGAGAGGCGAT 1679
Query 1680 ATGGGAAGTTGGAGACAAGTCGCATCCGAGGGATTATCTAAACTTCTTCTGTCTTGCAAA 1739
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 1680 ATGGGAAGTTGGAGACAAGTCGCATCCTAGGGATTACCTAAACTTCTTCTGTCTTGCAAA 1739
Query 1740 CagagaagagaagagagaTGGGGAGTTTGAAGCAGTTTCGTCGCCCCACCAGAAAACGCA 1799
|||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 1740 CAGAGAAGAGAAGAGAGACGGAGAGTTTGAAGCAGTTTCGTCGCCCCATCAGAAAACGCA 1799
Query 1800 TTACTGGAATGCGCAGAGGAATCGGAGATTCATGGTCTATGTCCACTCCAAGCTCATGAT 1859
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1800 TTATTGGAATGCGCAGAGGAATCGGAGATTCATGGTCTATGTCCACTCCAAGCTCATGAT 1859
Query 1860 AGTGGACGACACATACATTTTGATAGGATCAGCCAATATAAACCAGAGATCAATGGATGG 1919
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1860 AGTGGACGACACATACATTTTGATAGGATCGGCCAATATAAACCAGAGATCAATGGATGG 1919
Query 1920 TTGTCGGGACACCGAGATTGCAATAGGTTGCTACCAAACCAATACCAACAACACCAACGA 1979
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1920 TTGTCGGGACACCGAGATTGCAATAGGTTGCTACCAAACCAATACAAACAACACCAACGA 1979
Query 1980 AATCCAAGCTTACCGGTTATCGCTCTGGTATGAGCATACCGGTGGCAAGATCACGGCAGA 2039
||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1980 AATCCGAGCTTACCGGTTATCGCTCTGGTATGAGCATACCGGTGGCCAGATCACGGCAGA 2039
Query 2040 TGACTTATCATCGTCAGAGCCAGAGAGTCTTGAATGTGTCCGAGGGTTACGGACAATAGG 2099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 TGACTTATCATCGTCAGAGCCAGAGAGTCTTGAATGTGTCCGAGGGTTACGGACAATAGG 2099
Query 2100 AGAGCAAATGTGGGAGATTTACAGTGGAGACAAGGTCGTAGACATGCTCGGTATCCATTT 2159
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 2100 AGAGCAAATGTGGGAGATTTACAGCGGAGACAAGGTCGTGGACATGCTCGGTATCCATTT 2159
Query 2160 GGTCGCCTATCCAATTAGTGTGACAGGAGATGGTGCAGTTGAGGAAGTCGGTGACGG-TT 2218
||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||| ||
Sbjct 2160 AGTCGCCTATCCGATTAGTGTGACAAGAGATGGTGCAGTTGAGGAAGTCGGCGACGGATT 2219
Query 2219 GCTTTCCTGATACCAAGACCTTGGTGAAAGGAAAGAGGTCCAAGATGTTTCCTCCTGTTC 2278
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2220 -CTTTCCTGATACCAAGACCTTGGTGAAAGGAAAAAGGTCCAAGATGTTTCCTCCTGTTC 2278
Query 2279 TAACCACCTGA 2289
|||||||||||
Sbjct 2279 TAACCACCTGA 2289
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86198224435
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5