BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G55190.1 Length=803 Score E Sequences producing significant alignments: (Bits) Value Ahg924024 jgi|Araly1|924024|scaffold_105305.1 966 0.0 > Ahg924024 jgi|Araly1|924024|scaffold_105305.1 Length=612 Score = 966 bits (523), Expect = 0.0 Identities = 578/604 (96%), Gaps = 6/604 (1%) Strand=Plus/Plus Query 38 TCTC-TCT-TCTCCAAAAATGACGAACTACGGGGCGATTCCGACGTCGTCTCATCCATCA 95 |||| ||| ||||| |||||||||||||||| ||||||||||||||||||||||||||| Sbjct 6 TCTCTTCTCTCTCC-GAAATGACGAACTACGGCGCGATTCCGACGTCGTCTCATCCATCA 64 Query 96 CCGGCGATAGATCTCGAATACATCTCACGCGCCAAACACCGTATAAAATCCGGTCTAGCT 155 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 65 CCGGCGATAGATCTCGAATACATCTCACGCGCCAAACACCGTATAAAATCCGGTCTAGCC 124 Query 156 ACGCGCCGCCCATGGAAATCAATGTTCGATTTCGAATCAATGACTCTCCCTCACGGTTTC 215 |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 125 ACGCGCCGGCCATGGAAATCAATGTTCGATTTCGAATCAATGACTCTCCCACACGGATTC 184 Query 216 TTCGACGCGATCTCGAGGATCAAAACGAATCTCGGCTATTTCAGAGCTAATTACGCCATC 275 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 185 TTCGACGCGATCTCGAGGATCAAAACGAATCTCGGCTATTTCAGAGCAAATTACGCCATC 244 Query 276 GGAGTTCTCTTCATCCTCTTCCTAAGCCTTCTATATCACCCAACCTCGTTGATCGTGTTA 335 |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| Sbjct 245 GGAGTTCTCTTCATCCTCTTCCTAAGCCTTCTCTATCACCCAACGTCGTTAATCGTGTTG 304 Query 336 TCAATCTTGGTCGTCTTCTGGATCTTTCTCTATTTCCTCCGTGACGAGCCTCTTGTTGTT 395 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 305 TCAATCTTGGTCGTCTTCTGGATCTTTCTCTATTTCCTCCGTGACGAGCCTCTTGTGGTT 364 Query 396 TTTGGTTATCAGATTGATGATCGGACGGTTCTTATTGGTTTATCGGTTTTGACGGTTGTG 455 || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| Sbjct 365 TTCGGTTATCAGATTGATGATCGGACGGTTCTCATTGGTTTATCGGTTTTCACGGTTGTG 424 Query 456 ATGCTTTTGTTGACTCACGCTACTTCGAATATTCTGGGATCTTTGTTAACCGCCGCCGTG 515 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 425 ATGCTTTTGTTGACTCACGCTACGTCGAATATTCTGGGATCTTTGTTAACCGCCGCCGTG 484 Query 516 TTGGTTCTGATTCATGCGGCGGTTAGAAGAAGTGATAATTTGTTTCTTGATGAAGAAGCT 575 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 485 TTGGTTCTGATCCATGCGGCGGTTAGAAGAAGTGATAATTTGTTTCTTGATGAAGAAGCT 544 Query 576 GCGGCGGTTACTGAAGCTTCAGGGCTGATGTCATACCCTTCGTCGTAAAT-CCAAAAATT 634 ||||||||||||||| |||||||||||||||||||||||||||| ||| | ||||| || Sbjct 545 GCGGCGGTTACTGAATCTTCAGGGCTGATGTCATACCCTTCGTCATAATTACCAAA--TT 602 Query 635 TGtt 638 |||| Sbjct 603 TGTT 606 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 29659629426 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5