BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G55190.1

Length=803
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924024 jgi|Araly1|924024|scaffold_105305.1                        966    0.0  


> Ahg924024 jgi|Araly1|924024|scaffold_105305.1
Length=612

 Score =  966 bits (523),  Expect = 0.0
 Identities = 578/604 (96%), Gaps = 6/604 (1%)
 Strand=Plus/Plus

Query  38   TCTC-TCT-TCTCCAAAAATGACGAACTACGGGGCGATTCCGACGTCGTCTCATCCATCA  95
            |||| ||| |||||  |||||||||||||||| |||||||||||||||||||||||||||
Sbjct  6    TCTCTTCTCTCTCC-GAAATGACGAACTACGGCGCGATTCCGACGTCGTCTCATCCATCA  64

Query  96   CCGGCGATAGATCTCGAATACATCTCACGCGCCAAACACCGTATAAAATCCGGTCTAGCT  155
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct  65   CCGGCGATAGATCTCGAATACATCTCACGCGCCAAACACCGTATAAAATCCGGTCTAGCC  124

Query  156  ACGCGCCGCCCATGGAAATCAATGTTCGATTTCGAATCAATGACTCTCCCTCACGGTTTC  215
            |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  125  ACGCGCCGGCCATGGAAATCAATGTTCGATTTCGAATCAATGACTCTCCCACACGGATTC  184

Query  216  TTCGACGCGATCTCGAGGATCAAAACGAATCTCGGCTATTTCAGAGCTAATTACGCCATC  275
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  185  TTCGACGCGATCTCGAGGATCAAAACGAATCTCGGCTATTTCAGAGCAAATTACGCCATC  244

Query  276  GGAGTTCTCTTCATCCTCTTCCTAAGCCTTCTATATCACCCAACCTCGTTGATCGTGTTA  335
            |||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||| 
Sbjct  245  GGAGTTCTCTTCATCCTCTTCCTAAGCCTTCTCTATCACCCAACGTCGTTAATCGTGTTG  304

Query  336  TCAATCTTGGTCGTCTTCTGGATCTTTCTCTATTTCCTCCGTGACGAGCCTCTTGTTGTT  395
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  305  TCAATCTTGGTCGTCTTCTGGATCTTTCTCTATTTCCTCCGTGACGAGCCTCTTGTGGTT  364

Query  396  TTTGGTTATCAGATTGATGATCGGACGGTTCTTATTGGTTTATCGGTTTTGACGGTTGTG  455
            || ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct  365  TTCGGTTATCAGATTGATGATCGGACGGTTCTCATTGGTTTATCGGTTTTCACGGTTGTG  424

Query  456  ATGCTTTTGTTGACTCACGCTACTTCGAATATTCTGGGATCTTTGTTAACCGCCGCCGTG  515
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  425  ATGCTTTTGTTGACTCACGCTACGTCGAATATTCTGGGATCTTTGTTAACCGCCGCCGTG  484

Query  516  TTGGTTCTGATTCATGCGGCGGTTAGAAGAAGTGATAATTTGTTTCTTGATGAAGAAGCT  575
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  485  TTGGTTCTGATCCATGCGGCGGTTAGAAGAAGTGATAATTTGTTTCTTGATGAAGAAGCT  544

Query  576  GCGGCGGTTACTGAAGCTTCAGGGCTGATGTCATACCCTTCGTCGTAAAT-CCAAAAATT  634
            ||||||||||||||| |||||||||||||||||||||||||||| ||| | |||||  ||
Sbjct  545  GCGGCGGTTACTGAATCTTCAGGGCTGATGTCATACCCTTCGTCATAATTACCAAA--TT  602

Query  635  TGtt  638
            ||||
Sbjct  603  TGTT  606



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29659629426


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5