BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55200.1
Length=2225
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474575 jgi|Araly1|474575|fgenesh2_kg.1__4529__AT1G55200.1 3038 0.0
Ahg478767 jgi|Araly1|478767|fgenesh2_kg.3__1468__AT3G13690.1 411 2e-113
> Ahg474575 jgi|Araly1|474575|fgenesh2_kg.1__4529__AT1G55200.1
Length=2206
Score = 3038 bits (1645), Expect = 0.0
Identities = 2004/2168 (92%), Gaps = 61/2168 (3%)
Strand=Plus/Plus
Query 9 TCTTAAATGAGCAGAGAGAAACAGGGGAAGAGATCAGGTTCTAATGGGACTGAGAAGGTT 68
||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1 TCTTAAATGAGCAGAGAGAAACAGGAGAAGAGATCAGGTTCCAATGGGACTGAGAAGGTT 60
Query 69 CTTGTTGCTGTCAAAGCATCTAGGGAGATTTCAAAGACAGCATTTGTTTGGGCCTTGACT 128
||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 61 CTTGTTGCTGTTAAAGCATCTAGGGAGATTTCAAAGACAGCATTGGTTTGGGCTTTGACT 120
Query 129 CATATTGTTCATCCTGGAGATTGCATTACTCTGATTGTTGTTGTTACTTCTTACAATGCT 188
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 121 CATATTGTTCATCCTGGAGATTGCATTACTCTGATTGTTGTTGTCACTTCTCATAATGCT 180
Query 189 GGCCGAAAGCTATGGACTTTCCCTAGGTTTGCTGGAGATTGTGCTACTGGTCATTGGAAA 248
||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |||||
Sbjct 181 GGCCGAAAGCTATGGACTTTCCCGAGGTTCGCTGGAGATTGTGCTACTGGTCATCGGAAA 240
Query 249 CTGCATTCTGATCCAATGT-CTGAGATAAAGAGTGATCTCACTGATACTTGTTCCCAAAT 307
|||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CTGCATTCTGATGCAAT-TCCTGAGATAAAGAGTGATCTCACTGATACTTGTTCCCAAAT 299
Query 308 GATTCTCCAGCTTCATGATGTATATGATCCAAACAAGGTTAATGTCAGGATCAAGATTGT 367
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 300 GATTCTCCAGCTTCATGATGTCTATGATCCAAACAAGGTTAATGTCAGGATCAAGATTGT 359
Query 368 TTCTGGATCACCATGTGGAGCTGTTGCGGCTGAGGCCAAGAAATCTCAAGCAAATTGGGT 427
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 360 TTCTGGATCACCATGTGGAGCTGTTGCGGCTGAGGCCAAGAAATCACAAGCAAATTGGGT 419
Query 428 AGTTCTTGATAAGCACCTTAAGCATGAAGAGAAACGGTGCATAGATGAGTTACAATGTAA 487
|||||| |||||||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 420 AGTTCTGGATAAGCACCTTGAGCATGAAAAGAAACGGTGCATAGATGAGCTACAATGTAA 479
Query 488 CATTGTGGCGATGAAGCGTTCTGAGGCAAAAGTCCTGCGGTTGAACTTGGTCGGGTCTTC 547
||||||||| |||||||||||| |||||||| | ||||| ||||||||||||||||| |
Sbjct 480 CATTGTGGCAATGAAGCGTTCTCAGGCAAAATTTCTGCGCTTGAACTTGGTCGGGTCACC 539
Query 548 AACAAAGGAACCAGAATTAGCATCTGaaaaaaacaaaaaCAGGTTGTTAGATTCTGTTAA 607
||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 540 AACGAAGCAACCAGAATTAGCATCTGAAAAAAACAAAAACAAGTTGTTAGATTCTGTTAA 599
Query 608 AGCGGTTGTTACAACTACTCCAATGAGCAGTCCTGAGGTTGAGACATCATTCACAGGAAC 667
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 AGCGGTTGTTACATCAACTCCAATGAGCAGTCCTGAGGTTGAGACATCATTCACAGGAAC 659
Query 668 AGAAGCTT-GGACTTCATCAGTATCTAGCTCTGACCTCGGTA-CATCATCGCCAGTTTTC 725
||||| || ||||||||||||| ||||||||||||||||| | ||||||| || |||||
Sbjct 660 AGAAG-TTGGGACTTCATCAGTTTCTAGCTCTGACCTCGG-AGCATCATCACCTTTTTTC 717
Query 726 ACAGCTGAAGTGAGAAAGGATGAAACTTTGGTCGTCAAAGAGAATGAATCTGATTCTGAT 785
||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 718 ACAGCTGAAGTGAAAAAGGATGAAACTTTGGCCATCAAAGAGAATGAATCTGATTCTGAT 777
Query 786 TCAGAGAGCGAAAATCTATCACTACCTTCC-TTAAGTAAGAGATTCCAACCATGGATATC 844
||||||||||||||| |||||||||||||| | |||| |||||| || |||||||||||
Sbjct 778 TCAGAGAGCGAAAATGTATCACTACCTTCCACT-AGTATGAGATTACAGCCATGGATATC 836
Query 845 AGAATATCTTAGCACTCATTGCGTCTCGA-TGCAGGAAT-CAACGAGA------GG---- 892
|||||||||| |||||||| || |||| | ||||||||| | | |||| ||
Sbjct 837 AGAATATCTTGGCACTCATCGCCTCTC-ATTGCAGGAATCCGAGGAGAGTCTGTGGAAAA 895
Query 893 C-GATGATAAGGCTGTTCAAGTATCTA-CTAAAAAGGCTTTGCTTGAGAAAATTTCTAAG 950
| ||||||||||||| |||||| || | ||||||||||||| ||||||||||||||||||
Sbjct 896 CTGATGATAAGGCTGCTCAAGTTTC-ATCTAAAAAGGCTTTTCTTGAGAAAATTTCTAAG 954
Query 951 CTTGATGAAGGAGAAGAAGCAGCTATGTCAAGTAAAAGGAAAGACTTGGAGGAGTATAGT 1010
||||||||||||||||| |||| ||||||||||||||||| ||||||||||||| ||||
Sbjct 955 GTTGATGAAGGAGAAGAATCAGCAATGTCAAGTAAAAGGAATGACTTGGAGGAGTTTAGT 1014
Query 1011 GGAACCTTAAGAG---------CGTTATCACGAAATGCTCCTCCTGTTTCACCTCCTCTC 1061
||||||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct 1015 GGAACCTTAAGAGAAACAATTTCCTTATCACGAAATGCTCCTCCTGTTTCTCCTCCTCTA 1074
Query 1062 TGTTCTATATGCCAGCACAAAGCGCCTGTATTTGGAAAACCACCGAGGTTTTTCTCCTAC 1121
|||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1075 TGTTCTATCTGTCAGCACAAAGCGCCTGTATTTGGAAAACCGCCGAGGTTTTTCTCCTAC 1134
Query 1122 AAAGAGTTAGAGCTTGCAACAAACGGGTTTTCGCGAGCTAATTTTTTGGCAGAAGGTGGA 1181
||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||
Sbjct 1135 AAAGAGTTAGAGCTTGCAACAAATGGGTTTTCTCGAGCTAATTTCTTGGCAGAAGGTGGA 1194
Query 1182 TTTGGATCTGTTCATAGAGGTGTATTACCTGAAGGCCAGATTGTAGCAGTAAAGCAACAC 1241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 TTTGGATCTGTTCATAGAGGTGTATTACCTGAAGGCCAGATTGTAGCAGTAAAGCAACAC 1254
Query 1242 AAAGTGGCCAGTACACAAGGAGATGTAGAGTTTTGCTCTGAAGTAGAAGTTTTGAGCTGT 1301
||| |||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 AAACTGGCTAGCACACAAGGAGATGTAGAGTTTTGCTCTGAAGTAGAAGTTTTGAGCTGT 1314
Query 1302 GCTCAGCATCGAAACGTAGTTATGTTAATCGGTTTCTGCATCGAAGATACCAGAAGACTC 1361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 GCTCAGCATCGAAACGTAGTTATGTTAATCGGTTTCTGCATCGAAGATACCAGAAGACTC 1374
Query 1362 TTGGTCTATGAATACATATGCAATGGATCATTAGACTCTCATCTATACGGTCGCCATAAG 1421
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1375 TTGGTCTATGAATACATATGCAATGGATCATTAGACTCTCATCTATACGGTCGCCATAAA 1434
Query 1422 GACACTTTGGGATGGCCTGCAAGACAAAAAATAGCGGTTGGAGCGGCTCGAGGTCTTCGA 1481
||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1435 GACACTTTGGGTTGGCCTGCAAGGCAAAAAATAGCGGTTGGAGCGGCTCGTGGTCTTCGA 1494
Query 1482 TATCTTCATGAAGAGTGTAGAGTAGGTTGCATTGTTCACCGAGACATGAGGCCTAACAAT 1541
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1495 TATCTTCATGAAGAGTGTAGAGTGGGTTGCATTGTTCATAGAGACATGAGGCCTAACAAT 1554
Query 1542 ATACTAATTACTCATGATTATGAACCACTGGTTGGAGATTTTGGTTTAGCAAGATGGCAG 1601
|||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1555 ATACTAATAACTCATGATTATGAACCACTGGTTGGTGATTTTGGTTTAGCGCGATGGCAG 1614
Query 1602 CCTGATGGAGAGCTAGGTGTAGACACGCGTGTGATAGGAACTTTCGGCTATTTAGCTCCA 1661
|||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1615 CCTGATGGAGAGCTCGGTGTAGACACGCGTGTGATAGGAACTTTTGGTTATTTAGCTCCA 1674
Query 1662 GAGTATGCTCAAAGTGGACAAATCACAGAGAAAGCCGATGTTTACTCGTTCGGGGTTGTA 1721
|| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1675 GAATATACTCAAAGTGGACAAATCACAGAGAAAGCTGATGTTTACTCGTTCGGGGTTGTA 1734
Query 1722 TTGATCGAACTAATCACGGGTCGTAAAGCAATGGATATCTACAGACCAAAGGGACAACAA 1781
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 TTGGTCGAACTAATCACGGGTCGTAAAGCAATGGATATCTACAGACCAAAGGGACAACAA 1794
Query 1782 TGTTTAACTGAATGGGCAAGATCTTTATTAGAAGAGTATGCGGTTGAGGAATTAGTTGAT 1841
|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 1795 TGTTTAACTGAATGGGCAAGGTCTTTATTAGAAGAGTATGCAGTTGAGGAATTGGTTGAT 1854
Query 1842 CCGAGGCTCGAAAAGCGATATTCAGAAACACAAGTCATTTGCATGATTCATACAGCTTCA 1901
|||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1855 CCGAGGCTCGAAAAGCGATATTCAGAAACAGAAGTCATTTGTATGATTCATACAGCTTCA 1914
Query 1902 TTGTGTATACGTAGAGATCCACATTTGCGTCCTCGCATGTCTCAGGTGTTGCGTTTATTG 1961
|| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1915 TTATGTATACGTAAAGATCCACATTTGCGTCCTCGTATGTCTCAGGTGTTGCGTTTATTG 1974
Query 1962 GAAGGAGATATGTTAATGAATGAAATCTCAGGGAGGTTTAATGGAAGACTATCCACTGAG 2021
|||||||||||| ||||||||||||||||||| |||||||| ||| || | | |||
Sbjct 1975 GAAGGAGATATGGTAATGAATGAAATCTCAGGCAGGTTTAACGGA-GA-T-T-----GAG 2026
Query 2022 AAAGGTCTCAGAGATCATAACTAAAAGCTCAACTAGCCAATCTGATCACTTTCTTTTGGT 2081
||||||||||||| |||||||||| || | || | | ||||||||||||||| |
Sbjct 2027 AAAGGTCTCAGAGGTCATAACTAAT-GC--AG--AG--A-T-TGATCACTTTCTTTT--T 2075
Query 2082 ATAGTGCGTAGGATCAATAGAAGAATTTTGTAAAATCAAAGTCCTCT-T-AATTGACAAT 2139
|| |||||||||| ||| ||||||| |||||||||||||| | ||||||||||
Sbjct 2076 ---GT----AGGATCAATACAAGGATTTTGTGTAATCAAAGTCCTCTCTTAATTGACAAT 2128
Query 2140 TATGGTTT 2147
||||||||
Sbjct 2129 TATGGTTT 2136
> Ahg478767 jgi|Araly1|478767|fgenesh2_kg.3__1468__AT3G13690.1
Length=3216
Score = 411 bits (222), Expect = 2e-113
Identities = 417/509 (82%), Gaps = 22/509 (4%)
Strand=Plus/Plus
Query 47 TTCTAATGGGA-CTGAGAAGGTTCTTGTTGCTGTCAAAGCATCTAGGGAGATTTCAAAGA 105
|||| || ||| |||| |||||| |||| ||||| ||||| |||||||||||| ||||||
Sbjct 802 TTCTGAT-GGAGCTGAAAAGGTTATTGTCGCTGTTAAAGCCTCTAGGGAGATTCCAAAGA 860
Query 106 CAGCATTTG-TTTGGGCCTTGACTCATATTGTTCATCCTGGAGATTGCATTACTCTGATT 164
|||| ||| ||||||| ||||||||| ||||||| ||||| ||||||||||| || |||
Sbjct 861 CAGC-CTTGATTTGGGCTTTGACTCATGTTGTTCAGCCTGGGGATTGCATTACCCTTATT 919
Query 165 GTTGTTGTTACTTCTTACAA-TGCTGGCCGAAAGCTAT--GG----AC------TTTCCC 211
|||||||| ||||| |||| | | || ||||| || | || || ||||||
Sbjct 920 GTTGTTGTCCCTTCTCACAACT-CCGGACGAAAACTTTGGGGTTTCACTAAGAGTTTCCC 978
Query 212 TAGGTTTGCTGGAGATTGTGCTACTGGTCATTGGAAA-CTGCATTCTGATCCAATGTCTG 270
|| ||||||||| |||||||| | ||||||| ||||| || |||||||| || | | |
Sbjct 979 TATGTTTGCTGGGGATTGTGCAAGTGGTCATCGGAAATCT-CATTCTGAAGCACTACCAG 1037
Query 271 AGAT-AAAGAGTGATCTCACTGATACTTGTTCCCAAATGATTCTCCAGCTTCATGATGTA 329
|||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1038 AGATCAAA-AGTGATCTCACTGACACTTGTTCCCAAATGATTCTCCAGCTTCATGATGTC 1096
Query 330 TATGATCCAAACAAGGTTAATGTCAGGATCAAGATTGTTTCTGGATCACCATGTGGAGCT 389
||||| || || ||| | ||||||| ||| ||||||||||||||||| || || |||||
Sbjct 1097 TATGACCCGAATAAGATAAATGTCAAGATTAAGATTGTTTCTGGATCCCCCTGCGGAGCA 1156
Query 390 GTTGCGGCTGAGGCCAAGAAATCTCAAGCAAATTGGGTAGTTCTTGATAAGCACCTTAAG 449
||||| |||||| | |||||| | |||||||| |||||||| | || || ||||| |||
Sbjct 1157 GTTGCAGCTGAGTCGAAGAAAGCGCAAGCAAACTGGGTAGTAATGGACAAACACCTCAAG 1216
Query 450 CATGAAGAGAAACGGTGCATAGATGAGTTACAATGTAACATTGTGGCGATGAAGCGTTCT 509
|| ||||||||||| || || ||||| | |||||||| ||||||| |||||||||||||
Sbjct 1217 CAGGAAGAGAAACGATGTATGGATGAACTGCAATGTAATATTGTGGTGATGAAGCGTTCT 1276
Query 510 GAGGCAAAAGTCCTGCGGTTGAACTTGGT 538
||||||||||||| || || ||||||||
Sbjct 1277 CAGGCAAAAGTCCTACGCTTAAACTTGGT 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 83760448755
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5