BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55205.2
Length=511
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474577 jgi|Araly1|474577|fgenesh2_kg.1__4531__AT1G55205.1 453 5e-127
> Ahg474577 jgi|Araly1|474577|fgenesh2_kg.1__4531__AT1G55205.1
Length=574
Score = 453 bits (245), Expect = 5e-127
Identities = 267/278 (96%), Gaps = 0/278 (0%)
Strand=Plus/Plus
Query 24 CAATGGCGTCTTCTTCTAAAATCTGCAGATTATCATCAAAGATTCATTCTTTAACCCAGA 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CAATGGCGTCTTCTTCTAAAATCTGCAGATTATCATCAAAGATTCATTCTTTAACCCAGA 60
Query 84 AGCTCAGCAAGACGAATGTTCACATTTCCTCTTTACCCTCTCCCATTAAATCTTCATCTC 143
|||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 61 AGCTTAGCAAGACGAATGTTCACGCTTCCTCCTTACCCTCTCCCATTAAATCTTCATCTC 120
Query 144 CATCCTCAGCAACTTCCCGTATCAATCAATCTTTTAGATTACCGGTGGAGCTAAGTTGCT 203
||||||||||||| | |||||||||||||||||||||||||| |||||||||||| |||
Sbjct 121 CATCCTCAGCAACCACTCGTATCAATCAATCTTTTAGATTACCAGTGGAGCTAAGTAGCT 180
Query 204 GTTTATCGATGTTGCCACTACACAGTGCTATAGCATCTGCCAGATTGATATCAAGTTTGT 263
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GTTTATCGATGTTGCCCCTACACAGTGCTATAGCATCTGCCAGATTGATATCAAGTTTGT 240
Query 264 CTGTTGAGTCTAAGAGCTGGGGTTTAGTTCCTCAAGGT 301
||||||||||||||||||||| ||||||||||||||||
Sbjct 241 CTGTTGAGTCTAAGAGCTGGGCTTTAGTTCCTCAAGGT 278
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 18581771843
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5