BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G55207.1

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924027 jgi|Araly1|924027|scaffold_105308.1                        348    3e-95


> Ahg924027 jgi|Araly1|924027|scaffold_105308.1
Length=302

 Score =  348 bits (188),  Expect = 3e-95
 Identities = 262/296 (89%), Gaps = 12/296 (4%)
 Strand=Plus/Plus

Query  169  CTCTAAATGGCTCTGTGGACGGAAATATTGACAAATGCTGCCATTTTTGTGATAATCCAA  228
            ||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  17   CTC-AAATGGCTCCGTGGACCGAAATATTGACAAATGCTGCCATTTTTGTGATAATCCAA  75

Query  229  GCTCTAGCGTTTCTCATAATCTCCACTTCTTCCGACATATTCTCCTCCAAGATCAAGATG  288
            |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct  76   GCTCTAGCGTTTCTGATAATCTTCACTTCTTCCGACATATTCTCCTCCAAGATCAAGATG  135

Query  289  AAGACAAAGAAGAGATCTTTCGGCTTCAAACTCTCTCGTTCCATTTCCCATTTATTCGCT  348
            ||||| |||||||||||||| || ||||||||||||||||||||||| ||||||||||||
Sbjct  136  AAGACGAAGAAGAGATCTTTTGGTTTCAAACTCTCTCGTTCCATTTCGCATTTATTCGCT  195

Query  349  TTAATCTCAGATGATGTCTTTCAAGCCgaagaagaagaagaagtagcagaagaagGATAA  408
            |||| ||| |||||||||| || |||||| ||||||||||   |||||||||||| | | 
Sbjct  196  TTAACCTCCGATGATGTCTCTCGAGCCGACGAAGAAGAAG---TAGCAGAAGAAG-A-AG  250

Query  409  CCTTACTCTCTCCAT-TCATTAAAATCTCTATAGATTTATATTTCCATA-AACATT  462
            | || || ||||| | || | ||| |||| || ||||| |||| ||| | ||||||
Sbjct  251  C-TTCCTTTCTCC-TCTCCTCAAA-TCTCAATTGATTTCTATTACCA-AGAACATT  302



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19306728034


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5