BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G55221.1

Length=781
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924029 jgi|Araly1|924029|scaffold_105310.1                        331    4e-90


> Ahg924029 jgi|Araly1|924029|scaffold_105310.1
Length=435

 Score =  331 bits (179),  Expect = 4e-90
 Identities = 284/332 (86%), Gaps = 18/332 (5%)
 Strand=Plus/Plus

Query  1    GCAGTTGGTGTATGTCATTCATTGAACAACATCCGACTCTTTTGTCACAACCCAAATACT  60
            |||||||||||||| |||| ||| ||||||||   ||||||||||| |||||||||||||
Sbjct  68   GCAGTTGGTGTATGGCATTTATTCAACAACATAAAACTCTTTTGTCTCAACCCAAATACT  127

Query  61   TTTTCTTCATCACCATGGTTCCC-GCTC-CTAAGCTCAGATACTTAGAGCTTTACCTTTA  118
            | |||||||||||||||||||||  ||| | ||||||||||||||||||||||| |||||
Sbjct  128  TATTCTTCATCACCATGGTTCCCATCTCAC-AAGCTCAGATACTTAGAGCTTTA-CTTTA  185

Query  119  TCATGGTC-TCCGCATCAATCCTCACAGTTCGAGAACTCTTCAATGGA--C-AGAGACAC  174
            ||||| ||  ||  ||||||| ||||||||||| ||||||||| ||||  | | ||||||
Sbjct  186  TCATGATCAGCC-TATCAATCATCACAGTTCGACAACTCTTCACTGGACCCAAAAGACAC  244

Query  175  AGTCCCTTTGACCCTGATGGCACCATCCCGTCGAGGTCGAGTCATCTCCGTAGCGTTGAA  234
            | |||||||||||||||||| ||||||||||||| | |    ||||||||||||||||||
Sbjct  245  AATCCCTTTGACCCTGATGGAACCATCCCGTCGA-G-C----CATCTCCGTAGCGTTGAA  298

Query  235  CATTCCATCCTCTTTACGTCTTTCATAGTTTATAACGTTTTTGCAAATAGC-CTTCCATG  293
            ||||||||||||||||  ||||||||||| |||  ||||||||||| || | |||| || 
Sbjct  299  CATTCCATCCTCTTTATATCTTTCATAGTCTATGCCGTTTTTGCAA-TA-CTCTTCGATC  356

Query  294  GAGCAAGGCCTAGAGCAGCCGAAACTGCGAAG  325
            ||| | ||||||||||||||| ||| || |||
Sbjct  357  GAGTACGGCCTAGAGCAGCCGCAACCGCTAAG  388



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28820925252


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5