BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55230.1
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924031 jgi|Araly1|924031|scaffold_105312.1 1395 0.0
> Ahg924031 jgi|Araly1|924031|scaffold_105312.1
Length=980
Score = 1395 bits (755), Expect = 0.0
Identities = 915/988 (93%), Gaps = 28/988 (3%)
Strand=Plus/Plus
Query 58 TAAGACATAAAGCCACAACATGGGAACACTTGTGGGACATGTTGCACCGGGTTTTGCCTT 117
|||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2 TAAGGCATAAAGCCACAACATGGGAACACTTGTGGGACATGTTGCACCAGGTTTTGCCTT 61
Query 118 CTTTGCACTTGGTCTATGGCACTTATTTAACAACATAAAACTATTTTGTCTCAACCCAAA 177
|||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 62 CTTTACACTTGGTCTATGGCACTTATTTAACAACATAAAACTCTTTTGTCTCAGCCCAAA 121
Query 178 CACCTTTACTTCATCACCATGGTTTCCAACTTCCAAGCTTAGACATTTAGAGCTCTACAT 237
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 122 CACCTTTACTTCATCACCATGGTTTCCAACTTCCAAGCTTAGATATTTAGAGCTCTACTT 181
Query 238 AATCATGGTT-TGTTCGTCAATCTCCATAGCCTCA--GAGCTCTTCATTGGACCCAAGAA 294
|||||| ||| | ||| ||| |||||||| || | ||||||||||||||||||||||
Sbjct 182 AATCAT-GTTATCTTCATCAGCCTCCATAG-CT-ATGGAGCTCTTCATTGGACCCAAGAG 238
Query 295 ACATCAACCCTTTGACTCTGATGGTACCATCCCTTCAAACCACCTCCACAACTTTGAACA 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 ACATCAACCCTTTGACTCTGATGGTACCATCCCTTCAAACCACCTCCACAACTTTGAACA 298
Query 355 CTCCTCTATCTCCATGTCATTCTTAGTCTACGCGATTTTCGCAGTAGTTCTTGATCAAGA 414
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 299 CTCCTCTATCTCCATGTCCTTCTTAGTCTACGCGGTTTTCGCAGTAGTTCTTGATCAAGC 358
Query 415 AAGGCGTAGATCAAAT-AT-TT-CGCATGGACTGACTATGCTCGTTGCATCTTCTGCCTT 471
|||| ||| ||||| | || || |||||||||||||||| ||||| ||||||||||||||
Sbjct 359 AAGGAGTATATCAACTCATGTTTCGCATGGACTGACTATACTCGTCGCATCTTCTGCCTT 418
Query 472 TGCTCAACAGCTCTTCCTTTTCCATCTTCACTCTGCCGACCACATGGGCATTGAGGGACA 531
|||||||||||||||||| ||| ||||||||||||| ||||||||||||||||| |||||
Sbjct 419 TGCTCAACAGCTCTTCCTCTTCAATCTTCACTCTGCTGACCACATGGGCATTGAAGGACA 478
Query 532 ATACCATAAGCTCCTCCAGCTCATTATCTTCGTTTCT-TTCCTCACCACTCTAATCGGTA 590
||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||| |
Sbjct 479 ATACCATAAGCTCCTCCAGCTCATTATCTTCGTTTCTCTTC-TCACCAGTCTAATCGGAA 537
Query 591 TCA-CTTTGCCTAAAAGTTTCTTGGTAAGCTTTGTGAGGTCATCAAGCATAACTTTCCAA 649
| | ||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 538 T-AGCTTTGCCCAAAAGTTTCTTGGTAAGCTTTGTCAGGTCATCAAGCATAACTTTTCAA 596
Query 650 GGAGTGTGGTTCGTAGTGATGGGTTACATGCTTTGGACACCTAGCTTGATTCCCAAGGGA 709
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 597 GGAGTGTGGTTCGTAGTGATGGGTTACATGCTTTGGACACCTAGATTGATTCCCAAGGGA 656
Query 710 TGTTTTCTTCACGAAGAAGAAGGACACCAAGTGATTAAATGTTCCAGCGATAAAGCTATA 769
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 657 TGTTTTCTTCATGAAGAAGAAGGACACCAAGTGATTAAATGTTCCAGCGATAAAGCTTTA 716
Query 770 CACAGGGCCAAGTCGCTAGTCAACATCGAGTTTAGTTGGTTCTTTGTTGGAATCACAATT 829
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 717 CACAGGGCCAAGTCGCTAGTCAACATCGAGTTTAGTTGGTTTTTTGTTGGAATCACAATC 776
Query 830 TTTGTAATGTCGCTATT-CTTGATCCTAAGTGGGCTTTACGGTGAAAATGCCGAGTACTC 888
||||| |||||||| || ||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 777 TTTGTCATGTCGCT-TTACTTGATCCTGAGTGGACTTTACGGTGAAAATGCCGAGTACTC 835
Query 889 AATTCT-AGTCACTAAAGACAAAGGTGAAGAAAGTGGTGAAGAGAAACAAGACATAGAGT 947
|||||| | |||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 836 AATTCTTA-TCACTAAAGACAAAAGTGAAGAAAGTGGTGAAGAGCAACAAGACATAGAGT 894
Query 948 CGCTAAAGAAAAGTAAACCAAGTTTTGGC----T-G--AA-CTCCTTGGAAGTCGTCAAG 999
|||||||||||||||| |||||||||| | | | || |||||||||||| | |||
Sbjct 895 CGCTAAAGAAAAGTAATCCAAGTTTTGTCCAGATAGGTAAACTCCTTGGAAGT-G--AAG 951
Query 1000 ATGTGGAAAGGTAAGAAATTATTCGGTT 1027
| ||| |||||||| | |||||||||||
Sbjct 952 ACGTGTAAAGGTAATAGATTATTCGGTT 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41210873277
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5