BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55240.1
Length=1255
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924032 jgi|Araly1|924032|scaffold_105313.1 1354 0.0
Ahg924029 jgi|Araly1|924029|scaffold_105310.1 209 3e-53
> Ahg924032 jgi|Araly1|924032|scaffold_105313.1
Length=974
Score = 1354 bits (733), Expect = 0.0
Identities = 898/973 (92%), Gaps = 29/973 (3%)
Strand=Plus/Plus
Query 80 ACATAATACAAACCCACAACATGGGATCATTTTTAGGACATGTTTTGCCAGGTTTTGCCT 139
||||||||||||||||||||||||||||| || | ||||||||| | ||||| |||||||
Sbjct 1 ACATAATACAAACCCACAACATGGGATCACTTGTGGGACATGTTATACCAGGCTTTGCCT 60
Query 140 TCGTAGCACTTGGCTTATGGCACTTATTCAACAACATAAAACTCTTTTGTCTCCATCCAA 199
|| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 61 TCTTAGCACTTGGCTTATGGCACTTATTCAACAACATAAAACTCTTCTGTCTCCATCCAA 120
Query 200 ACACATTCAGTTCATCAACATGGTTCCCAATTTCAAAGCTCAGACACTTAGAGCTCTACT 259
| ||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 121 AGACATTCAATTCATCAACATGGTTCCCAATTTCAGAGCTCGGACACTTAGAGCTCTACT 180
Query 260 TAATCATGCTATCTTCAACAGCCTCCATATCCATGGAGCTCTTCATTGGACCTAGAAGAC 319
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TAATCATGCTATCTTCATCAGCCTCCATATCCATGGAGCTCTTCATTGGACCTAGAAGAC 240
Query 320 ACCATCCCTTTGACGTC-GATGGTACCATCCCATCGAACCACCTCCACAACTTCGAACAT 378
|| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACAATCCCTTTGAC-TCTGATGGTACCATCCCATCGAACCACCTCCACAACTTCGAACAT 299
Query 379 TCTTCCATCTCCATGTCCTTCTTAGTCTATGCCGTTTTGGCATTAGTCCTGGATCGAGCA 438
||||||||||||||||| || ||||||||||||||||||||||||||||| ||| |||||
Sbjct 300 TCTTCCATCTCCATGTCTTTTTTAGTCTATGCCGTTTTGGCATTAGTCCTCGATAGAGCA 359
Query 439 CGGCCTAGAGCCGCCGCTTCTGAGGGGCTAACCATGCTAGCTGCAGCCGCTGCCTTCAGT 498
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 CGGCCTAGACCCGCCGCTTCTGAGGGGCTAACCATGCTAGCTGCAGCCGCTGCCTTCAGT 419
Query 499 CAACAGCTACTTCTCTTTCATTTTCACTCTACCGACCACATGGGCGTTGAGGGACAATAT 558
||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||
Sbjct 420 CAACAGCTACTTCTCTTCCATTTTCATTCTACCGACCACATGGGCGTTGGGGGACAATAC 479
Query 559 CATGTGATTCTACAAGTCGTTATCTTCGTCTCTCTCCTTACCACAATCATGGGTATTTTC 618
||| |||||||||||||||||||||||||||||||| ||||||| ||| || ||||||||
Sbjct 480 CATTTGATTCTACAAGTCGTTATCTTCGTCTCTCTCGTTACCACTATCCTGTGTATTTTC 539
Query 619 TTGCCCAAGAGTTTTCTGGTGAGCCTTGTGAGATCTTCAAGCATAGCCTTTCAAGGCGTG 678
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TTGCCGAAGAGTTTTCTGGTGAGCCTTGTGAGATCTTCAAGCATAGCCTTTCAAGGCGTG 599
Query 679 TGGCTCATTGTGATTGGTTGCATGCTTTACACACCGAGTTTGATCCCCAAGGGATGTTAT 738
|||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 600 TGGCTCATTGTGATGGGTTGCATGCTTTACATACCGAGTTTGATCCCCAAGGGATGTTAT 659
Query 739 ATTCACGATGAAGGAAGACACATAATAGTTAAGTGTTCCACCGAAGAAGCTCTTCACAGA 798
|||||||||||| ||||||| |||| ||||| ||||| |||||||||||||||||||||
Sbjct 660 ATTCACGATGAAATAAGACACCTAATGGTTAAATGTTCTACCGAAGAAGCTCTTCACAGA 719
Query 799 GCTAAGTCGTTGGTCAACCTCGAATTCAGT-T----G--G-CTATTTGTTACAAACAC-- 848
|||||||||||||||||||||||||||||| | | | ||||||||||||||||
Sbjct 720 GCTAAGTCGTTGGTCAACCTCGAATTCAGTATTTCAGTTGGCTATTTGTTACAAACATGT 779
Query 849 AC--TATTTGTTGTCACACTATATTTGATTCTCGATCGTGTTTACGGTGAAAACGTAGAG 906
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 ACAATATTTGTTGTCACACTATATTTGATTCTCGATCGTGTTTACGGTGAAAACGTAGAG 839
Query 907 TACTCTAGTCTAACCACCAATAATCAAACATACCAAGATGATGAAGAACAACACTTCGAA 966
||||||| ||||| ||||||| |||||||| | |||||||||||||||||||| | |
Sbjct 840 TACTCTATTCTAATCACCAATTATCAAACAGAACAAGATGATGAAGAACAACAA--C-A- 895
Query 967 TCGAAGTCGACTCAGAAAACAAGTTTTGTCCAAATGGGTAAACTCGTTGGACATGGGCAG 1026
| | || ||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 896 T-----T----TC-GAAT-CAAGTTTTGTCCAAATGGGTAAACTCGTTGGACATAGGCAG 944
Query 1027 AAAATGTGAGAAA 1039
|||||||||||||
Sbjct 945 AAAATGTGAGAAA 957
> Ahg924029 jgi|Araly1|924029|scaffold_105310.1
Length=435
Score = 209 bits (113), Expect = 3e-53
Identities = 257/323 (80%), Gaps = 24/323 (7%)
Strand=Plus/Plus
Query 145 GCACTTGGCT-TATGGCACTTATTCAACAACATAAAACTCTTTTGTCTCCATCCAAACAC 203
||| |||| | ||||||| |||||||||||||||||||||||||||||| | ||||| ||
Sbjct 68 GCAGTTGG-TGTATGGCATTTATTCAACAACATAAAACTCTTTTGTCTCAACCCAAATAC 126
Query 204 --ATTCAGTTCATCAACATGGTTCCCAATTTCA-AAGCTCAGACACTTAGAGCTCTACTT 260
|||| ||||||| ||||||||||| | ||| ||||||||| |||||||||| |||||
Sbjct 127 TTATTC--TTCATCACCATGGTTCCCA-TCTCACAAGCTCAGATACTTAGAGCTTTACTT 183
Query 261 AATCATGCT-ATC-T-TCAA-CAGCCTCCA-TATCCATGGAGCTCTTCATTGGACCTAGA 315
|||||| | | | | |||| || | | | | || | | ||||||| |||||| | |
Sbjct 184 TATCATGATCAGCCTATCAATCATCA-C-AGT-TCGACA-A-CTCTTCACTGGACCCAAA 238
Query 316 AGACACCATCCCTTTGACG-TCGATGGTACCATCCCATCGAACCACCTCCACAAC-TTCG 373
|||||| ||||||||||| | ||||| |||||||| |||| ||| |||| | | || |
Sbjct 239 AGACACAATCCCTTTGACCCT-GATGGAACCATCCCGTCGAGCCATCTCCGTAGCGTT-G 296
Query 374 AACATTCT-TCCATCTCCATGTCCTTCTTAGTCTATGCCGTTTTGGCATTAGTCCTGGAT 432
||||||| ||| ||| || || ||| |||||||||||||||| ||| || || | |||
Sbjct 297 AACATTCCATCC-TCTTTATATCTTTCATAGTCTATGCCGTTTTTGCAATACTCTTCGAT 355
Query 433 CGAGCACGGCCTAGAGCCGCCGC 455
|||| |||||||||||| |||||
Sbjct 356 CGAGTACGGCCTAGAGCAGCCGC 378
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46891187910
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5