BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55260.1
Length=991
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924035 jgi|Araly1|924035|scaffold_105316.1 957 0.0
> Ahg924035 jgi|Araly1|924035|scaffold_105316.1
Length=618
Score = 957 bits (518), Expect = 0.0
Identities = 585/617 (95%), Gaps = 5/617 (1%)
Strand=Plus/Plus
Query 136 AGAGAGAACACAACACATCGAACCATGGAGAAATCAACAAGAACCCTATTCATAACCATC 195
||||||| |||||||||||||||||||||| | |||||||||| ||||||||||||||||
Sbjct 1 AGAGAGAGCACAACACATCGAACCATGGAGCACTCAACAAGAAGCCTATTCATAACCATC 60
Query 196 GTGATAACCTCCATGTTGCTAGGGTTTGGAAACTCTGATCTTGCTCAGGACAGAGAGGAG 255
|||||||||||||||||||||||| ||||| |||||||| | ||||||||||||||||||
Sbjct 61 GTGATAACCTCCATGTTGCTAGGGATTGGATACTCTGATATAGCTCAGGACAGAGAGGAG 120
Query 256 TGTACGAACCAGCTCATAGAACTATCCACGTGTATTCCGTACGTTGGAGGAGACGCCAAG 315
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 121 TGTACGAACCAGCTCATAGAACTCTCGACGTGTATTCCGTACGTTGGAGGAGACGCCAAG 180
Query 316 GCTCCAACAAAAGATTGTTGTGCAGGGTTTGGCCAAGTTATAAGAAAGAGTGAGAAGTGT 375
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GCTCCAACAAAAGATTGTTGTGCAGGGTTTGGCCAAGTTATAAGAAAGAGTGAGAAGTGT 240
Query 376 GTTTGCATATTGGTCAGAGACAAAGATGATCCTCAACTTGGTATCAAGATTAACGCAACC 435
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 241 GTTTGCATATTGGTCAGAGACAAAGATGATCCTCAACTTGGTATCAAGATTAATGCATCC 300
Query 436 CTAGCCGCTCATCTTCCCTCCGCTTGTCATATCACGGCTCCTAACATCACTGACTGTATT 495
|||||||||||||||||||| ||||||| ||| ||||||||||||||||| |||||||||
Sbjct 301 CTAGCCGCTCATCTTCCCTCTGCTTGTCGTATAACGGCTCCTAACATCACCGACTGTATT 360
Query 496 TCGATTCTGCATCTACCTCGTAACTCAACATTGGCTAAAGAGTTTGAGAACTTAGGAAGG 555
|||||||||||| ||||||| |||||||||||||||||||||||||||| ||||||||||
Sbjct 361 TCGATTCTGCATTTACCTCGAAACTCAACATTGGCTAAAGAGTTTGAGAGCTTAGGAAGG 420
Query 556 ATTGAAGACAACTACAACTCCACATCTCCTACACAAATTCATAAAGATGGGACAGGAGGA 615
||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 421 ATTGAAGACAATTACAACTCCACATCTACTTCACAAATTCATAAAGATGGGACAGGAGGA 480
Query 616 GGAAAAGCCGAACCAGTGAAGAGTAATGGATGGAAG--GA-GAAGAGTTGGTTGGGTGTT 672
|||||||| ||| ||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 481 GGAAAAGCTGAATCAGTGAAGAGTAATGGATGGAAGAAGAAGAAGAGTTGGTTGGGTGTT 540
Query 673 GAGCTTTTAATATATTTGCTAGTTTCTCTCATCTTCTTTTAATTACTTCCTTTCTTTAAT 732
||||||||||||| || |||||||||||||||||||||||||||||||||| | ||||||
Sbjct 541 GAGCTTTTAATAT-TT-GCTAGTTTCTCTCATCTTCTTTTAATTACTTCCTCTATTTAAT 598
Query 733 GTTCCTTTGCTTTATTA 749
|||||||||||| ||||
Sbjct 599 GTTCCTTTGCTTGATTA 615
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36826737822
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5