BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G55265.1

Length=693
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg474585 jgi|Araly1|474585|fgenesh2_kg.1__4539__AT1G55265.1         660    0.0  


> Ahg474585 jgi|Araly1|474585|fgenesh2_kg.1__4539__AT1G55265.1
Length=546

 Score =  660 bits (357),  Expect = 0.0
 Identities = 472/523 (90%), Gaps = 25/523 (5%)
 Strand=Plus/Plus

Query  21   cttctttgcttgcactcttctcctgtctct-tcctctctctcttatctctctcctcctcc  79
            ||||||||||| |||||||||  | ||||| || | |||||| |  ||| ||||||||||
Sbjct  5    CTTCTTTGCTTACACTCTTCT-GTCTCTCTCTCTTATCTCTC-T-CCTC-CTCCTCCTCC  60

Query  80   ctaaatctccgccgtccgatcttctctcaatccaacgacctcgatctcttctcttctcta  139
            ||||||||||||||||| ||||||||||||||| | |    ||           ||||  
Sbjct  61   CTAAATCTCCGCCGTCCAATCTTCTCTCAATCC-A-G----CG----------GTCTC--  102

Query  140  aatctcgaccgtccatctctcGCCGCCGATGACATCCACGATCTTCTCCCACGCTACGGA  199
             ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  103  GATCTCGACCGTCCATCTCTGGCCGCCGATGACATCCACGATCTTCTCCCACGCTACGGA  162

Query  200  TTCCCGAAAGGTCTTCTTCCCAACAACGTCAAATCGTACACTATCTCCGACGACGGCGAT  259
            ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct  163  TTCCCGAAAGGTCTTCTTCCCAATAACGTCAAATCGTACACTCTCTCCGACGACGGCGAT  222

Query  260  TTCACCGTTGACCTGATTTCCAGTTGCTACGTCAAGTTCTCCGATCAACTCGTTTTCTAC  319
            |||||||||||||| ||||| | |||||||||||||||||||||||||||||||||||||
Sbjct  223  TTCACCGTTGACCTAATTTCTAATTGCTACGTCAAGTTCTCCGATCAACTCGTTTTCTAC  282

Query  320  GGCAAGAATATCGCCGGAAAACTCAGTTACGGATCTGTTAAAGACGTCCGTGGAATCCAA  379
            ||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct  283  GGCAAGAATATTGCCGGAAAACTCAGTTACGGATCTGTTATAGACGTCCATGGAATCCAA  342

Query  380  GCTAAAGAAGCTTTCCTTTGGCTACCAATCACCGCCATGGAATCGGATCCAAGCTCTGCC  439
            |||||||| |||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct  343  GCTAAAGAGGCTTTCCTTTGGTTACCAATCACCGCCATGGAATCTGATCCAAGCTCTGCC  402

Query  440  ACGGTTGTGTTCTCCGTCGGATTTGTGTCCAAGACTTTACCTGCT-TCCATGTTCGAAAA  498
            ||||||||||||||||| ||||| || |||||||||||||| | | ||||||||||||||
Sbjct  403  ACGGTTGTGTTCTCCGTTGGATTCGTATCCAAGACTTTACCGG-TGTCCATGTTCGAAAA  461

Query  499  TGTTCCTTCTTGCTCAAGAAACCTAAATCTTCAAGACTCTTGA  541
            |||||||||||||||||||||||||||||||||||| ||||||
Sbjct  462  TGTTCCTTCTTGCTCAAGAAACCTAAATCTTCAAGATTCTTGA  504



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25466108556


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5