BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55270.1
Length=1895
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924037 jgi|Araly1|924037|scaffold_105318.1 2207 0.0
> Ahg924037 jgi|Araly1|924037|scaffold_105318.1
Length=1345
Score = 2207 bits (1195), Expect = 0.0
Identities = 1296/1346 (96%), Gaps = 2/1346 (0%)
Strand=Plus/Plus
Query 192 ATGAACTTCGAGTTTTGAAGATGGATCTATCTTCTCAACGACAATCCCCAAATGGTTCTA 251
|||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGCTTCAAGTTTTGAAGATGGATCTATCTTCTCAACGACAATCCCCAAATGGTTCTA 60
Query 252 GGGGTTTTCGTCTTCAAGCTCCATTGGTGGATTCTGTATCTTGTTATTGTAGAGTAGATT 311
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 61 GGGGTTTTCGTCTTCAAGCTCCATTGGTGGATTCTGTTTCTTGCTATTGTAGAGTAGATT 120
Query 312 CCGGTCTTAAGACTGTTGTAGAAGCAAGGAAGTTTGTTCCTGGTTCAAAGCTTTGTATTC 371
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 121 CTGGTCTTAAGACTGTTGTAGAAGCAAGGAAGTTTGTTCCTGGATCAAAGCTTTGTATTC 180
Query 372 AACCTGATATCAATCCCAATGCTCATAGACGTAAGAATTCTAAGAGGGAGAGGACTAGAA 431
|||||||||||||||| ||||| ||||| |||||||||||||||||||||||||| || |
Sbjct 181 AACCTGATATCAATCCTAATGCGCATAGGCGTAAGAATTCTAAGAGGGAGAGGACGAGGA 240
Query 432 TTCAACCTCCGCTTCTCCCTGGCCTCCCTGACGATCTAGCTGTCGCTTGCCTTATCCGTG 491
||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 241 TTCAACCTCCGCTTCTCCCCGGCCTCCCGGACGATCTAGCTGTCGCTTGCCTCATCCGTG 300
Query 492 TTCCTCGTGCAGAACATAGAAAACTCAGGCTCGTGTGTAAGAGATGGTATAGGCTTGCTT 551
| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 301 TCCCGCGTGCAGAACATAGAAAACTCAGGCTAGTGTGTAAGAGATGGTATAGGCTTGCTT 360
Query 552 CTGGGAACTTCTTTTACTCTCAAAGGAAGTTACTTGGGATGTCTGAAGAATGGGTTTATG 611
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 361 CTGGGAACTTCTTTTACTCTCAGAGGAAGTTACTTGGGATGTCGGAAGAATGGGTTTATG 420
Query 612 TTTTTAAAAGAGATCGTGATGGGAAGATCTCGTGGAATACGTTTGATCCTATCTCTCAGC 671
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 421 TTTTTAAAAGAGATCGCGATGGGAAGATCTCGTGGAATACGTTTGATCCTATCTCCCAGC 480
Query 672 TTTGGCAGCCGCTTCCACCTGTTCCAAGGGAATATTCAGAGGCTGTTGGGTTTGGTTGCG 731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTTGGCAGCCGCTTCCACCTGTTCCAAGGGAATATTCAGAGGCTGTTGGGTTTGGTTGCG 540
Query 732 CTGTTTTAAGCGGTTGTCATCTTTATTTGTTTGGAGGTAAGGATCCTTTAAGAGGGTCAA 791
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 CTGTTTTAAGCGGTTGTCATCTTTATTTGTTTGGAGGTAAGGATCCTCTAAGAGGGTCAA 600
Query 792 TGAGGAGGGTCATTTTCTATAATGCAAGGACGAATAAGTGGCACAGAGCACCGGATATGC 851
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 601 TGAGGAGAGTCATTTTCTATAATGCGAGGACGAATAAGTGGCACAGGGCACCGGATATGC 660
Query 852 TTAGGAAGCGGCAtttttttGGTTGTTGTGTTATAAACAATTGTTTATATGTAGCGGGTG 911
|||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 661 TTAGGAAGCGGCATTTCTTTGGCTGTTGTGTCATAAACAATTGTTTATATGTAGCGGGTG 720
Query 912 GGGAGTGTGAAGGAATTCAAAGGACACTTCGCTCAGCTGAGGTTTATGATCCAAACAAGA 971
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 721 GGGAGTGTGAAGGAATTCAAAGGACACTCCGCTCAGCTGAGGTGTATGATCCAAACAAGA 780
Query 972 ACAGGTGGAGTTTTATTGCTGATATGAGTACAGCAATGGTGCCTCTGATCGGTGTGGTTT 1031
|||| ||||||||||||||||||||||| ||||||||||||||||| || ||||||||||
Sbjct 781 ACAGATGGAGTTTTATTGCTGATATGAGCACAGCAATGGTGCCTCTTATTGGTGTGGTTT 840
Query 1032 ATGACAAAAAGTGGTTTCTCAAGGGTCTTGGGTCTCACCAACTAGTAATGAGTGAAGCTT 1091
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 841 ATGATAAAAAGTGGTTTCTCAAGGGTCTTGGGTCTCACCAACTAGTCATGAGTGAAGCTT 900
Query 1092 ATGACCCAGAAGTTAATTCATGGAGCCCGGTTAGTGACGGGATGGTTGCTGGTTGGCGTA 1151
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 901 ATGACCCAGAAGTTAATTCATGGAGCCCGGTTAGTGATGGGATGGTTGCTGGTTGGCGAA 960
Query 1152 ATCCGTGTACTTCTCTAAACGGTCGTCTTTACGGATTGGATTGTAGGGACGGATGCAAAC 1211
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 961 ATCCGTGTACTTCTCTAAACGGTCGTCTTTACGGATTGGATTGTAGGGACGGATGCAAAC 1020
Query 1212 TCAGGGTATTTGATGAATCCACGGATTCATGGAACAAATTCATGGACAGTAAAGCTCATT 1271
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 TCAGGGTATTTGATGAATCCACGGATTCATGGAACAAATTCATGGACAGTAAAGCTCATT 1080
Query 1272 TGGGAAACTCGAAGTCGCTTGAAGCTGCAGCTCTTGTTCCTCTACACAATAAGCTTTGTA 1331
|||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 1081 TGGGAAACTCAAAGTCGCTTGAAGCTGCAACTCTTGTTCCTCTACACAATAAACTTTGTA 1140
Query 1332 TAATCCGGAACAACATGAGCATGAGTCTGGTTGATGTCTCGAATCCTGACAAAAACAACC 1391
|||||||||||||||||||||||||||||||||||||| |||||||||| || |||||||
Sbjct 1141 TAATCCGGAACAACATGAGCATGAGTCTGGTTGATGTCGCGAATCCTGATAAGAACAACC 1200
Query 1392 CTCGACTGTGGGAAAACATTGCCGTAAAAGGACAGTCCAAGAGCATTCTCAGTAATATAT 1451
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1201 CTCGACTGTGGGAAAACATTGCCGTAAAAGGACAGTCCAAGAGCATTCTCAGTAATATAT 1260
Query 1452 GGTCGAGTATTGCAGGGAGAGCTTTGAAGAGCCATATAGTGCATTGTCAAGTGCTTCAAG 1511
||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||
Sbjct 1261 GGTCGAGTATTGCAGGGAGAGCTTTGAAGAGCCATATTGTGCATTGCCAAGTACTTCAAG 1320
Query 1512 CGTGACAAAAA-TGTTCTGAAACTCA 1536
| ||||||||| | ||||||||||||
Sbjct 1321 CCTGACAAAAAAT-TTCTGAAACTCA 1345
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71190667905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5