BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55280.1
Length=1409
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914657 jgi|Araly1|914657|Al_scaffold_0001_4911 1646 0.0
> Ahg914657 jgi|Araly1|914657|Al_scaffold_0001_4911
Length=1185
Score = 1646 bits (891), Expect = 0.0
Identities = 1094/1190 (92%), Gaps = 22/1190 (2%)
Strand=Plus/Plus
Query 98 ATGGCGACGGAATCAATTTTTCTCAAGCCTGTATCTTTCGCATGGTTTACGAAAAACCCA 157
|||||||| |||||||||| ||||||||| |||||||||||| |||| ||||||||||||
Sbjct 1 ATGGCGACTGAATCAATTTGTCTCAAGCCCGTATCTTTCGCAAGGTTGACGAAAAACCCA 60
Query 158 TTGAATCAATTTCATAAAAGAAGACAACTTTCCTATCGAATTCGTCGTTTTCGATTCGGT 217
| |||||||||| |||||||||| ||||||||| |||||||| ||||||||||||||||
Sbjct 61 TCAAATCAATTTCGTAAAAGAAGAAAACTTTCCTCTCGAATTCATCGTTTTCGATTCGGT 120
Query 218 GTAATTTGCTCCAAGTCATCTGATTATCAAGATTTCCAGAGTTATGCAAGACCTTTGCGT 277
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 121 GTAATTTGCTCCAAGTCATCTGATTATCAAGATTTCCAGAGTTATGCAACACCTTTGCGT 180
Query 278 CTCTTACCAGCAGAAGAAGTGAAAGTTTTTAGAGGGAATCCATCTTTCACTGTGAGCGAA 337
| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 181 TTGTTATCAGCAGAAGAAGTGAAAGTTTGTAGAGGGAATCCATCTTTCACTGTGAGCGAA 240
Query 338 TCTCGATCTCTTTATAAGGTTAAGCTACAGACAAGTAATTTGTTTGGTTCAGGGATTAGT 397
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 241 ACTCGATCTCTTTATAAGGTTAAGCTAGAGACAAGTAATTTGTTTGGTTCAGGGATTAGT 300
Query 398 GATATGAATGCTAGAGTTCTTATATGCTTGATAGACGAAAAGGGCGATTCGGTATTACAG 457
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GATATGAATGCTAGAGTTCTTATATGCTTGATAGACGAAAAGGGCGATTCGGTATTACAG 360
Query 458 ACAATACCTCCAAATTTGTCATCTTTGGATCCAGAGGTTGTGGAAAATGGTGAAAGCTTC 517
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ACAATACCTGCGAATTTGTCATCTTTGGATCCAGAGGTTGTGGAAAATGGTGAAAGCTTC 420
Query 518 AGGTTTCAGAGGGGCTCTCTTGATGAATTCTCATTTGAAGGACCGAAACTCGGCAAAATC 577
||||||||||| |||||| ||||||||||| ||||||||||||| ||||||| |||||||
Sbjct 421 AGGTTTCAGAGAGGCTCTGTTGATGAATTCACATTTGAAGGACCCAAACTCGACAAAATC 480
Query 578 AGAGCTTTTTGGATTGGTCTTGAGTCTGGTCAATGGAGAGTTGGAAGAGTGAGCTTGTGG 637
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 481 AGAGCTTTTTGGATTGGTCTTGAGTCTGGTCAATGGAGAATTGGAAGAGTGAGCTTGCGG 540
Query 638 GTGGTTAATCCTCGTGGT-AA--A---------G-A-AA-CCGAGGCAAAAACCTTT-TG 681
||||||||| |||| ||| || | | | || |||| ||| |||| ||| ||
Sbjct 541 GTGGTTAATTCTCGCGGTGAAGGACTTTCTCTTGGAGAAACCGATGCAGAAAC-TTTCTG 599
Query 682 TTACCGATATGATTTTGAAGTTGATGAACTCTTGCTTGGAGAGAGCAGTGACCTATCAAT 741
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 600 TGACCGATATGATTTTGAAGTTGATGAAATCTTGCTTGGAGAGAGCAGTGACCTATCAAT 659
Query 742 GGTGGAACTTAGACCTAGCCGTATCACTGAACTCGCTGACTCCGATCAAATCTCTTCGTC 801
||||||||| ||||||| |||||| ||||||||||| ||||||||||||||||||||||
Sbjct 660 GGTGGAACTCAGACCTACCCGTATTACTGAACTCGCCGACTCCGATCAAATCTCTTCGT- 718
Query 802 TT-CAGCTCTGAATCTTGACCGTACTATGGTTTCCAATGAGGAAAGCATGGAAGAATACG 860
|| ||||| || ||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 719 TTACAGCTGTGGATCTTGACCGTACAACGGTTTCCAATGAGGAAAGCATGGAAGAATACG 778
Query 861 CAAACTTGAAACTCTCTCTGCTACTCTATGATGCGGTTCTCATCCTTCTTGGAAGTTTGG 920
|||||||||||| ||||||||| |||||||||||| |||||| |||||||||||||||||
Sbjct 779 CAAACTTGAAACGCTCTCTGCTTCTCTATGATGCGATTCTCACCCTTCTTGGAAGTTTGG 838
Query 921 TCTTTTCCTTCTCACTTGGTGAAAACTCCGCCATTGCTTTCTTCTTCGGTGGAACTATGG 980
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 839 TCTTTTCCTTCTCACTTGGTGAAAACTCCGCCATTGCTTTCTTCTTCGGTGGAACAATGG 898
Query 981 GATTTCTCTACTTATTGCTATTACAGAGATCAGTTGATGAACTGCAAGTACCGGGATCTT 1040
||||| ||||||| |||| |||||||||||||| |||||| |||||| |||||||||||
Sbjct 899 GATTTTTCTACTTGCTGCTCTTACAGAGATCAGTCGATGAATTGCAAGCACCGGGATCTT 958
Query 1041 CTTCTTCCGAAAACTCCAATCAGATACTCAGCGGGGGACTCAAGATTCCGGTTTTGAGCC 1100
|||| || |||||||||||||| |||||||| || |||||| |||||||||| |||||
Sbjct 959 CTTCATCAGAAAACTCCAATCAAATACTCAGTGG---ACTCAATATTCCGGTTTGGAGCC 1015
Query 1101 TTGCATTGGCCATAGGATTAACGGTTTTGGCCATGAGAGGACACATTGGAGGAGAGATGA 1160
||||| ||||||||||||| || ||||| ||| ||||||| |||||||||||||| | |
Sbjct 1016 TTGCACTGGCCATAGGATTGACTGTTTTAGCCGTGAGAGGTCACATTGGAGGAGATCTCA 1075
Query 1161 CTGCATTTGCAGTCACACCAAAAGAGATAGTGGTGGGGACTTTGGGGTTTCTTGTATGCA 1220
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1076 CTGCATTTGCAGTCACACCAAAAGAGATTGTGGTGGGGACTTTGGGGTTTCTCGTATGCA 1135
Query 1221 AAGTAGCCGTTATTTTGGCTGCCTTTAAGCCCTTGAAGGATGGTCCTTAA 1270
||||||||||| |||||||||| ||||| ||||||||||||||| |||||
Sbjct 1136 AAGTAGCCGTTGTTTTGGCTGCGTTTAAACCCTTGAAGGATGGTTCTTAA 1185
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52678808835
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5