BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55300.2
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474587 jgi|Araly1|474587|fgenesh2_kg.1__4541__AT1G55300.2 739 0.0
> Ahg474587 jgi|Araly1|474587|fgenesh2_kg.1__4541__AT1G55300.2
Length=842
Score = 739 bits (400), Expect = 0.0
Identities = 453/479 (95%), Gaps = 1/479 (0%)
Strand=Plus/Plus
Query 164 TTAAGA-AGAAGAATTCAAGTCAAGCTGTTGGTATCTACAATGGAAGAACAGTTCATACT 222
||| || ||||||||||||||||||| | || || || |||||||||||||||||||||
Sbjct 61 TTACGACAGAAGAATTCAAGTCAAGCCGGTGATACCTTTAATGGAAGAACAGTTCATACT 120
Query 223 TAGGGTTCCACCGTCTGTTTCAGAACGAATTGATCGGCTTTTAAGCGAGGATGCTTCTAC 282
|||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||
Sbjct 121 TAGGGTTCCACCGTCTGTTTCAGAACGAATTGATCGGCTTTTGAGCGACGAGGCTTCTAC 180
Query 283 TTCCGACGAAATCCCTTTGGATTTGtttttttCAGAGGATGGGAGAAACGGGACGTTTAT 342
|||||||||||||||||||||||||| ||| |||||||| ||||||||||||||||||||
Sbjct 181 TTCCGACGAAATCCCTTTGGATTTGTGTTTCTCAGAGGACGGGAGAAACGGGACGTTTAT 240
Query 343 GATTGGAAACGACGAGTTCCCGGCTTCTCTGCTTGATCTCCCTGCAGTTGTTGAGTCTTT 402
||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 241 GATTGGAAACGACGAGTTCCCGGCTTCTCTGCTTGATCTTCCTGCTGTTGTTGAGTCTTG 300
Query 403 TAAAACTTATGATGATTGTGCATTAGTCAAAACTGCTGATATTGGGCAGATGATCATGGT 462
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 301 GAAAACTTATGATGATTGTGCATTGGTCAAAACTGCTGATATTGGGCAGATGATTATGGT 360
Query 463 TAGGGAGCCTGGTGATCCTGCGCCTAATACAGTTGAATACAGACATGGTCTAACTCCTCC 522
||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 361 TAGGGAGCCGGGTGATCCCGCGCCTAATACAGTTGAATACAGACATGGTTTAACTCCTCC 420
Query 523 AATGAAGGATGCTCGAAAGAGGAGATTTCGTCGAGAGCCTGACCTTAATCCGGAGCTTGT 582
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 421 AATGAAGGATGCTCGAAAGAGAAGATTTCGTCGAGAGCCTGACCTCAATCCGGAGCTTGT 480
Query 583 ACAGCGGGTTGAGAGAGACTTGTTGAATATATTGAGTGGCGGAACGGTAGAAAATGTAA 641
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 481 ACAGCGGGTTGAGAGAGACTTGTTGAATATCTTGAGTGGCGGAACGGTAGAAAATGTAA 539
Score = 411 bits (222), Expect = 7e-114
Identities = 284/313 (91%), Gaps = 7/313 (2%)
Strand=Plus/Plus
Query 730 GTACATGAGCAAGAGGAACCAGCTACGAACGAGAATGCTAGTAATGCAAGTAAGAAAGTA 789
||| |||||||||||||| || | ||||||||||||||||||||| || || |||||
Sbjct 536 GTAAATGAGCAAGAGGAAGCAACCGCGAACGAGAATGCTAGTAATGAAAATAGGAAAG-- 593
Query 790 TCTTCTTCTTCACCTACACCTGTTGAAAAGCCTGAAGCTCCTGAGACAGGCACTAGTAAT 849
|| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 594 TC-TCGTCTTCACCTACACCTGCTGAAAAGCCTGAAGCTCCTGAGACAGGCACTAGTAAT 652
Query 850 CCAACAGGAGTTGAACCGGAGAGAAGTGAATCAGAAGATTCTGATGATTCAATGTGAGTT 909
||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 653 CCAGCAGGAGTTGAGCCAGAGAGAAGTGAATCAGAAGATTCTGATGATTCAATGTGAGTT 712
Query 910 TATTATTATATAAAGAGATTTTTCTTACGAAAGCTTA-GAGTTTGCGCAAGTCCTGTCTT 968
||||| || || |||||||||||||| ||| |||| ||||||| ||||||||||||||
Sbjct 713 TATTACG-TA-AA-GAGATTTTTCTTACAAAAACTTACGAGTTTGGGCAAGTCCTGTCTT 769
Query 969 AGAAAATCATGGATAATTATGTCCCCATGATTTGATGATGTCTTGTTCGACCTTTTTCAA 1028
||||||||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||
Sbjct 770 AGAAAATCATGGATAATTATGTCTCCATGGTTTGATGATGTCTTCTTCAACCTTTTTCAA 829
Query 1029 TGGAAAAGTTGTT 1041
|||||||||||||
Sbjct 830 TGGAAAAGTTGTT 842
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39190358676
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5