BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55310.3
Length=1267
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924040 jgi|Araly1|924040|scaffold_105321.1 979 0.0
Ahg478747 jgi|Araly1|478747|fgenesh2_kg.3__1448__AT3G13570.1 257 1e-67
> Ahg924040 jgi|Araly1|924040|scaffold_105321.1
Length=911
Score = 979 bits (530), Expect = 0.0
Identities = 617/657 (94%), Gaps = 13/657 (2%)
Strand=Plus/Plus
Query 343 GAGATCCGCGAGGGTTTGGGTTCGTTCAATTTATGGACCCTGCTGATGCTGCTGATGCAA 402
||||||| ||||||||||| || |||||||||||||||||||||||||||||||| ||||
Sbjct 242 GAGATCCACGAGGGTTTGGTTTTGTTCAATTTATGGACCCTGCTGATGCTGCTGACGCAA 301
Query 403 AACATCACATGGATGGTTATCTTCTTCTTGGCCGTGAGTTGACTGTCGTGTTTGCAGAAG 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 AACATCACATGGATGGTTATCTTCTTCTTGGCCGTGAGTTGACTGTCGTGTTTGCAGAAG 361
Query 463 AGAACAGAAAGAAACCGACTGAAATGAGAGCAAGGGAGCGTGGTGGAGGAAG---CAG-A 518
||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 362 AGAACAGGAAGAAACCGACTGAAATGAGAGCAAGGGAGCGTGGTGGAGGAAGGAGCAGCA 421
Query 519 --TTTCGGGATAGAAGACGTACTCCACCTCGTTACTACTCTCGCTCTCGTTCTCCTCCCC 576
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 422 GATTTCGGGATAGAAGGCGTACTCCTCCTCGTTACTACTCTCGCTCTCGTTCTCCTCCCC 481
Query 577 -CTCGACGTGGTAGATCTCGGTCACGGAGCGGTGACTATTATTCTCCTCCCCCTAGAAGA 635
| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 482 GC-CGACGTGATAGATCTCGGTCACGGAGCGGTGACTATTATTCTTCTCCCCCTAGAAGA 540
Query 636 CATCACCCAAGATCTATCTCGCCCAGGGAAGAGCGATATGATGGGAGGAGGTCATACTCG 695
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CATCACCCAAGGTCTATCTCGCCCAGGGAAGAGCGATATGATGGGAGGAGGTCATACTCG 600
Query 696 CGCTCACCTGCCTCTGATGGCTCAAGGGGTCGCAGTTTAACTCCAGTCAGAGGTAAGAGC 755
||||||||||||||| |||||||||||||||||||||||||||| | ||||||||| |||
Sbjct 601 CGCTCACCTGCCTCTAATGGCTCAAGGGGTCGCAGTTTAACTCCGGCCAGAGGTAATAGC 660
Query 756 CGCAGCTTAAGCCCCAGCCCTAGAAGAAGCATAAGCCGTAGCCCAAGAAGAAGCAGGAGC 815
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CGCAACTTAAGCCCCAGCCCTAGAAGAAGCATAAGCCGTAGCCCAAGAAGAAGCAGGAGC 720
Query 816 CCAAGCCCAAAAAGAAATAGGAG-CGTTAGCCCAAGAAGAAGCATAAGCCGTAGCCCTAG 874
|| ||||| || ||||||| ||| | ||||||| ||||||||||||||||||||||||||
Sbjct 721 CCGAGCCCGAAGAGAAATATGAGTC-TTAGCCCGAGAAGAAGCATAAGCCGTAGCCCTAG 779
Query 875 AAGAAGCAGGAGTCCGAGGAGAAGCAGAAGAAGCTACACTCCTGAACCCGCCAGAAGCAG 934
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 780 AAGAAGCAGGAGCCCGAGGAGAAGCAGAAG---CTACACTCCTGAACCCGCCAGAAGCAG 836
Query 935 GAGCCAAAGCCCGCATGGGGGCCAGTATGACGAAGACCGTTCACCAAGCCAGTGATT 991
|||||| |||||||||||||| || ||||| |||||||| || ||||||||||||||
Sbjct 837 GAGCCAGAGCCCGCATGGGGGGCATTATGAAGAAGACCGCTCGCCAAGCCAGTGATT 893
Score = 399 bits (216), Expect = 2e-110
Identities = 234/243 (96%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 66 GAGAGATTGAAGCTTGACTCAATGAGGGGAAGGAGCTACACTCCGTCACCACCTAGGGGT 125
||||| |||||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 1 GAGAGGTTGAAGCTTGGCTCAATGAGGGGAAGGAGCTACACCCCGTCACCACCAAGGGGT 60
Query 126 TATGGGAGGAGGGGTCGAAGCCCAAGCCCTAGAGGCCGATATGGAGGTCGTAGCAGGGAC 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TATGGGAGGAGGGGTCGAAGCCCAAGCCCTAGAGGCCGATATGGAGGTCGTAGCAGGGAC 120
Query 186 CTCCCGACCAGTCTTTTGGTTCGCAATCTACGCCATGATTGCAGGCAAGAAGATCTCAGG 245
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTCCCAACCAGTCTTTTGGTTCGCAATCTACGCCATGATTGCAGGCAAGAAGATCTCAGG 180
Query 246 AAGTCGTTTGAGCAGTTTGGTCCTGTCAAGGACATTTACCTGCCAAGGGATTATTATACC 305
||||| |||||||||||||| || ||||||||||||||||| ||||||||||||||||||
Sbjct 181 AAGTCATTTGAGCAGTTTGGCCCGGTCAAGGACATTTACCTACCAAGGGATTATTATACC 240
Query 306 GGA 308
|||
Sbjct 241 GGA 243
> Ahg478747 jgi|Araly1|478747|fgenesh2_kg.3__1448__AT3G13570.1
Length=1037
Score = 257 bits (139), Expect = 1e-67
Identities = 202/232 (87%), Gaps = 5/232 (2%)
Strand=Plus/Plus
Query 81 GACTCAATGAGGGGAAGGAGCTACACTCCGTCACCACCTAGGGGTTATGGGAGGAGGGGT 140
||| |||||||||||||||||||||| || |||||||| ||||||||||| ||||||||
Sbjct 6 GACACAATGAGGGGAAGGAGCTACACGCCATCACCACCAAGGGGTTATGGAAGGAGGGGC 65
Query 141 CGAAGCCCAAGCCCTAGAGGCCGATAT-G-GAG-GTCGTAG-CAGGGACCTCCCGACCAG 196
|| ||||| ||||| | || |||||| | | | ||||| | |||||| ||||| |||||
Sbjct 66 CGGAGCCCTAGCCCCCGGGGTCGATATGGTGGGAGTCGT-GACAGGGATCTCCCAACCAG 124
Query 197 TCTTTTGGTTCGCAATCTACGCCATGATTGCAGGCAAGAAGATCTCAGGAAGTCGTTTGA 256
||||||||||||||| ||||| |||||||||||||||||||| ||||||| | | |||||
Sbjct 125 TCTTTTGGTTCGCAACCTACGTCATGATTGCAGGCAAGAAGACCTCAGGAGGCCATTTGA 184
Query 257 GCAGTTTGGTCCTGTCAAGGACATTTACCTGCCAAGGGATTATTATACCGGA 308
|||||||||||||||||||||||| ||||| ||||||||||| ||||| |||
Sbjct 185 GCAGTTTGGTCCTGTCAAGGACATCTACCTTCCAAGGGATTACTATACTGGA 236
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47348662914
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5