BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G55330.1

Length=427
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg924043 jgi|Araly1|924043|scaffold_105324.1                        315    2e-85


> Ahg924043 jgi|Araly1|924043|scaffold_105324.1
Length=217

 Score =  315 bits (170),  Expect = 2e-85
 Identities = 199/213 (93%), Gaps = 1/213 (0%)
 Strand=Plus/Plus

Query  62   AAGACATCAAAGGAGAATTAATGGAGGCAATGAAGATGAAGATGATGGTGTTTATTATGG  121
            ||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||
Sbjct  1    AAGACATCAAAGGAGAAGTAATGGAGGCAATGAAGATGAAGATGATGATGTTTGTTATGG  60

Query  122  TTGTTGCGGTGGCTTTCTCAGCTGCCACGGCTGCTACCGTTGAAGCTCCAGCTCCAAGCC  181
            |||||||||||||||| ||| ||||  | ||||| ||||| |||||||||||||||||||
Sbjct  61   TTGTTGCGGTGGCTTTTTCATCTGCGGCAGCTGCCACCGTGGAAGCTCCAGCTCCAAGCC  120

Query  182  CAACTTCTGATGCTGCCATGTTTGTACCAGCACTGTTTGCATCTGTTGTTGCTTTGGCAT  241
            |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct  121  CAACTTCTGATGCTGCTATGTTTGTACCAGCATTGTTTGCATCTGTTGTTGCTTTGGCAT  180

Query  242  CTGGTTTCATCTTTTGATCATTCttttt-ttCT  273
            |||||||| ||||||||||||||||||| ||||
Sbjct  181  CTGGTTTCTTCTTTTGATCATTCTTTTTATTCT  213



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15376702367


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5