BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55340.1
Length=1151
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474592 jgi|Araly1|474592|fgenesh2_kg.1__4546__AT1G55340.1 1375 0.0
> Ahg474592 jgi|Araly1|474592|fgenesh2_kg.1__4546__AT1G55340.1
Length=1106
Score = 1375 bits (744), Expect = 0.0
Identities = 855/909 (94%), Gaps = 6/909 (1%)
Strand=Plus/Plus
Query 247 TTCTGTCTTTGGTTTCATCTAGTTTCACTCTTGGTGATTCTGGAAGATAAGTCGCTGAGT 306
||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||||
Sbjct 200 TTCTGTCTTTGGTTTCATCAAGTTTCACTCTTGGTGATTCTTCAAGCTAAGTCGCTGAGT 259
Query 307 TAAAGTTGCAGATCTTGAGGTTAAGAGAAAGAAAG-TGAGTGTTGTGTAATGGAGGAGGT 365
| |||||||||||||||||||||||||| || | | | |||| ||| |||||||||| ||
Sbjct 260 TTAAGTTGCAGATCTTGAGGTTAAGAGAGAG-AGGATTAGTGCTGTTTAATGGAGGAAGT 318
Query 366 AAAGGGACAAAGAGGAAGTGGAACCACAGAGGCAGATTTTGTGTTGCAATGGGGTGAGAG 425
||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||
Sbjct 319 AAAGGGACAAAGAGGGAGTGGAACCACAGAGGCAGATTTTGTGTTGCAATGGGGAGAAAG 378
Query 426 GAAAAGAGTTAGATGTATGAAAGTGAAGAAAGATCAAAGCCTTGCCAATGGCAAATCAAC 485
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 379 AAAAAGAGTTAGATGTATGAAAGTGAAGAAAGATCAAAGCCTTGCAAATGGCAAATCAAC 438
Query 486 TGATTGTTTGACTAAACGTAAACTCATTTCTCGTGCTGTCTCTTCTGAGAGAGGCTCACC 545
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 439 TGATTGCTTGACTAAACGTAAACTCATTTCGCGTGCTGTCTCTTCTGAGAGAGGCTCGCC 498
Query 546 TTCTCGACATCTTAACCGTCCTAACAAGATCACTGATTCTCTAGTCAATGTGCGGAGATC 605
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 499 TTCTCGACATCTTAACCGTCCAAACAAGATCACGGATTCTCTAGTCAATGTGCGGAGATC 558
Query 606 GTTTATGGCGTCGCCCGAGAAGGAAGATAGGTATTATACAACAAGGGGTTCGATGGGAAT 665
|||| |||| ||||| |||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 559 GTTTGTGGCATCGCCTGAGAAGGAAGATAGGTATTACACAACTAGGGGTTCGATGGGTAT 618
Query 666 AGATGAGAGTGGGAAAATTATTAAGGAACCTGTGAAAGAAACAAAGAAGCATGTGTGGCC 725
|||||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 619 AGATGAGAGTGGAAAAATTATTAAGGAACCTGTGAAAGAACCCAAGAAGCATGTGTGGCC 678
Query 726 AAAGTTGTATATAGCTTTGTCAAATAAAGAGAAGGAAGAAGATTTTTTGGCTATGAAAGG 785
|||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 679 AAAGTTGTTTATAACTTTGTCAAATAAAGAGAAGGAAGAAGATTTCTTGGCTATGAAAGG 738
Query 786 TTGCAAGCTTCCTCAAAGACCTAAGAAGCGAGCCAAATTGGTTCAGAAGACATTGCTTCT 845
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 739 TTGCAAGCTTCCTCAAAGACCTAAGAAACGAGCCAAATTGGTTCAGAAGACATTGCTTCT 798
Query 846 GGTGAGTCCAGGAGCTTGGTTATCAGATCTGTGCAaagagagatatgaagtaagagagaa 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 799 GGTGAGTCCAGGAGCTTGGTTATCAGATCTGTGCAAAGAGAGATATGAAGTAAGAGAGAA 858
Query 906 gaagacttcaaagaagagaccaagagGATTGAAGGCAATGGGGAGCATGGAAAGCGATTC 965
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 859 GAAGACTTCAAAGAAGAGACCAAGAGGATTGAAGGCAATGGGGAGCATGGAAAGCGATTC 918
Query 966 GGAGTGAAGAACCGTCGAAGAAA--GAACTTAAATGAGATATTCAAGATTTTGGCGAGGG 1023
||||||||||||| ||||||||| ||||||||| || |||||||||||||||| |||||
Sbjct 919 GGAGTGAAGAACCATCGAAGAAAAAGAACTTAAAAGAAATATTCAAGATTTTGGTGAGGG 978
Query 1024 GTAGGAAGG-TGTATTTCACTTTTTCGTTGCATTTTGAGATGCCTCTCTTCATTACTACA 1082
|||| |||| |||||||| ||||||| || ||||||||||||||||||||||||||||||
Sbjct 979 GTAGAAAGGATGTATTTCGCTTTTTCATTACATTTTGAGATGCCTCTCTTCATTACTACA 1038
Query 1083 GGTTAACTATGAGGCACTTGTATTTTTGACGGATCTTTTGCTTTCAAAGCTAACCTATCT 1142
|||||| ||||||||||||||||||||| | || |||||||||||||||||| ||||||
Sbjct 1039 GGTTAAAAATGAGGCACTTGTATTTTTGATG-ATGTTTTGCTTTCAAAGCTAATCTATCT 1097
Query 1143 TCTTAATCT 1151
|||| ||||
Sbjct 1098 TCTTGATCT 1106
Score = 148 bits (80), Expect = 7e-35
Identities = 110/122 (90%), Gaps = 11/122 (9%)
Strand=Plus/Plus
Query 1 AAAGGTGAGCGTCGCAGTAAAGACCAGAGGGTAAGCAGTTTTTATTTCTTTtgtgtgtgt 60
||||||||||||||||||||||||| ||||||| |||||| ||| |||||||
Sbjct 1 AAAGGTGAGCGTCGCAGTAAAGACC---------GCAGTTTATATTTC-TTT-TGTGTGT 49
Query 61 gtgtgtTTAAAGAAGATAGATAAACAGTGTTTCGATCTTCTGGTCTCATCGAGATATTAA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 50 GTGTGTTTAAAGAAGATAGATAAACAGTGTTTCGATCTTCTGGTCTCATCGAGATATTAA 109
Query 121 AA 122
||
Sbjct 110 AA 111
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42926404542
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5