BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55370.2
Length=1414
Score E
Sequences producing significant alignments: (Bits) Value
Ahg914665 jgi|Araly1|914665|Al_scaffold_0001_4919 1526 0.0
> Ahg914665 jgi|Araly1|914665|Al_scaffold_0001_4919
Length=1074
Score = 1526 bits (826), Expect = 0.0
Identities = 999/1080 (93%), Gaps = 21/1080 (2%)
Strand=Plus/Plus
Query 70 ATGGCTTTGGTTCATTACATGAATGTTTCACGTAGCACTTTTCCTTTGAGTAGATCTTCA 129
||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGGCTTTGCTTCATTCCGTGAATGTTTCACGTAGCACTTTGCCTTTGAGTAGATCTTCA 60
Query 130 AAGATTAATT-TGAGCTCATCTTTTGCTTCTTTGCCACTTCAGTTTCATAAAAACATT-A 187
|||| | || ||||||||||||||||||||||||||||||||||||||| |||| || |
Sbjct 61 AAGACT-CTTCTGAGCTCATCTTTTGCTTCTTTGCCACTTCAGTTTCATAGAAAC-TTCA 118
Query 188 AGAGATTAGAATCCTCTGTTCCACCATCAGCTTCAGCTTCAGCTTCACCGGCGTTTCCTA 247
|||||||||||||||||||||||||||||||||| || ||||||||||||| |||||||
Sbjct 119 AGAGATTAGAATCCTCTGTTCCACCATCAGCTTCTGCAGCAGCTTCACCGGCATTTCCTA 178
Query 248 TTGATGTTGAGTATCTCCGGCGAGAGTTCTCCGGCCATGGAGCCACTTTCGAAGATATTG 307
| || |||||||||||||||| |||||||||||||||||||||||||||||||||||| |
Sbjct 179 TCGACGTTGAGTATCTCCGGCAAGAGTTCTCCGGCCATGGAGCCACTTTCGAAGATATCG 238
Query 308 GTGAGACATGTATTGCTAGACTAAAACTGGACAATGGGAGTTCAGCGAATGTGATGTTGA 367
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 239 GTGAGACATGTATTGCTAAACTAAAACTGGACAATGGGAGTTCAGCGAATGTGATGTTGA 298
Query 368 CACGTGGGATGATAACATCGTACAAAGTCCGAGTGTGGCACGGTGGCAAAGTGGAGCTTC 427
||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 299 CACGTGGGATGATAACATCTTACAAAGTCAGAGTGTGGCACGGTGGCAAAGTGGAGCTTC 358
Query 428 TCCACACATGGGTCGAACAAGAGGA-G--GAAG-A-A-GTAGTGATACGAGGAGGTGTTT 481
| ||||||||||||||||||||||| | |||| | | ||||||||||||||||||||||
Sbjct 359 TTCACACATGGGTCGAACAAGAGGAAGAAGAAGTAGATGTAGTGATACGAGGAGGTGTTT 418
Query 482 CATCTGCATTTAGAT-CATCAGATTCTGATGAAATCAGTGACTGGAGACTCCAAGGGATC 540
|||||||||||| || |||||||||||||||| || | ||| ||||||||||| ||||||
Sbjct 419 CATCTGCATTTA-ATTCATCAGATTCTGATGATATTAATGAATGGAGACTCCACGGGATC 477
Query 541 AGTGGTGATTCAAAGGATTGCGTTCAAATGGAGCTGAGAAGAAGTGACAAGAAGATCAAA 600
|||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||
Sbjct 478 AGTGGTGATTCAAAGGATTGTGTTCAAATGGAGCTAAGAAGAAGTGACAAGCAGATCAAA 537
Query 601 GAGATTGAACTGAAACAGATTATTAGTCTGAGAGAA-AACACACTGAGCATTGAGCTTTC 659
||||||||| ||||||||||||| |||||||||||| || |||||||||||||||||||
Sbjct 538 GAGATTGAAATGAAACAGATTATAAGTCTGAGAGAAGAA-ACACTGAGCATTGAGCTTTT 596
Query 660 TATGACAAACAAAGGCATTTCACCAATCA-AGCTTGAAGGTTGTTCACTTGTAAGTTATT 718
| ||||||||||||||| ||||||||||| | ||||| ||||||||||||||||||||||
Sbjct 597 TGTGACAAACAAAGGCAGTTCACCAATCAGA-CTTGAGGGTTGTTCACTTGTAAGTTATT 655
Query 719 TGACAGTGAGTACACCAGAAGCTACATATGCAGTTGGACTGGAAGGTTCGGATTTTGTGG 778
||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||
Sbjct 656 TGACAGTGAGTACACCAGAAGCTACATATGCAGTTGGGCTAGAAGGTTCATATTTTGTGG 715
Query 779 AAACGACTCCGTTTCTTCCTCGTTTCGGGGTGGTTCAAGGCGAGAAGGAAGAAGAAAAA- 837
||||||| ||||||||||||||||| | || |||||||| ||| | ||||||||||||
Sbjct 716 AAACGACAACGTTTCTTCCTCGTTTCAGAGTAGTTCAAGGAGAGGATGAAGAAGAAAAAA 775
Query 838 C--CCGGGTTTGGTGGGGAAGAAGAGAGCAACTACAAACAGTTGAATAGA-GAGATGAGT 894
| ||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 776 CAACCGGGTTTGGTGGGGAAGAAGAGAGCAACTACAAACAGTTGAAC-GAAGAGATGAGT 834
Query 895 AGGATATACACATGTGCTCCAAAGAGCTTCACTGTCATTGATAGGGGAAGAAGGAACTCG 954
||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 835 AGGATTTACACATTTGCTCCAAAGAGCTTCACTGTCATTGATAGGGGACGAAGGAACTCG 894
Query 955 GTGGTGGTGGGAAGAGAAGGGTTTGAAGAAGTGTACATGTACAGTCCTGGTTCTAGACTT 1014
||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 895 GTGATAGTGGGAAGAGAAGGGTTTGAAGAAGTGTACATGTACAGTCCTGGTTCAAGACTT 954
Query 1015 GAAAGTTACACAAAGTCTGCTTATGTATGTATTGGACCATCTTCATTGCTAAGTCCAATC 1074
|||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||
Sbjct 955 GAAAGTTACACAAAGTCTGCTTATGTCTGTATTGGACCATCTTCGTTGCTAAATCCAATC 1014
Query 1075 TCTTTGGAATCTGGTTGTGTATGGAGAGGTGTCCTACATCTTCACAATCCTAATTCCTAA 1134
||||||||| ||| |||||||||||||||||| ||||||||||| ||||||||||| |||
Sbjct 1015 TCTTTGGAACCTGCTTGTGTATGGAGAGGTGTGCTACATCTTCATAATCCTAATTCATAA 1074
Score = 75.0 bits (40), Expect = 1e-12
Identities = 64/74 (86%), Gaps = 8/74 (11%)
Strand=Plus/Plus
Query 1201 TGGGAAGAGAAGGGTTTGAAGAAGTGTACATGAACTGATATACAGTCCTGGTTCAAGACT 1260
|||||||||||||||||||||||||||||||| | | ||||||||||||||||||
Sbjct 902 TGGGAAGAGAAGGGTTTGAAGAAGTGTACATG---T-A----CAGTCCTGGTTCAAGACT 953
Query 1261 TTAAAGTTACGCAA 1274
| |||||||| |||
Sbjct 954 TGAAAGTTACACAA 967
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52869260060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5