BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G55400.1 Length=733 Score E Sequences producing significant alignments: (Bits) Value Ahg481664 jgi|Araly1|481664|fgenesh2_kg.4__724__AT2G17460.1 544 5e-154 Ahg473700 jgi|Araly1|473700|fgenesh2_kg.1__3654__AT1G32505.1 399 1e-110 Ahg484914 jgi|Araly1|484914|fgenesh2_kg.5__906__AT2G17460.1 385 3e-106 Ahg497174 jgi|Araly1|497174|fgenesh2_kg.26__9__AT2G17460.1 379 1e-104 Ahg481538 jgi|Araly1|481538|fgenesh2_kg.4__598__AT2G17460.1 302 3e-81 Ahg479985 jgi|Araly1|479985|fgenesh2_kg.3__2686__AT2G17460.1 302 3e-81 Ahg473336 jgi|Araly1|473336|fgenesh2_kg.1__3290__AT2G17460.1 296 1e-79 > Ahg481664 jgi|Araly1|481664|fgenesh2_kg.4__724__AT2G17460.1 Length=909 Score = 544 bits (294), Expect = 5e-154 Identities = 438/504 (87%), Gaps = 24/504 (5%) Strand=Plus/Minus Query 174 CAATCCCATAATTAGTTACTGGATGCCGGGAGAGATGTTAGTGATGATAGATACTAAACG 233 |||||| |||||||||||||||||||||||| |||||| |||||||||||| | |||||| Sbjct 909 CAATCCAATAATTAGTTACTGGATGCCGGGAAAGATGTCAGTGATGATAGAAAGTAAACG 850 Query 234 CCTTCCTGTCTACATTGACAGTCAAGTGGGGTTGAATACGTTCTTTATGATTCGTGGTAG 293 || |||||| |||||||||| |||| || | | | ||| ||||||||||| | Sbjct 849 CCCTCCTGTATACATTGACAATCAA------ATG---A-G-T-TTT-TGATTCGTGGTGG 803 Query 294 GTATCCTTCTCTCAACTTGTTTGTCTCTTTCATTACAACCGTCAAGACACTCGAGAATAA 353 | ||||| | ||| ||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 802 GGATCCTAGTGTCACCTTGTTTGTCTCTTTCATTACAACCGTCAAGGCACTCGGGAATAC 743 Query 354 TGTCTCTAGGACTC-ATGGTGACGA--T-GC-TGAAAGTGACCGTGTTTCAAATGTTGAT 408 |||| ||||||| | ||||||| || | | || ||| ||||||||||||| ||| Sbjct 742 TGTCCCTAGGAC-CGATGGTGA-GAGTTACCGTGTGTGTGGGAGTGTTTCAAATGTAGAT 685 Query 409 GAAAATAATGAGGCCGTAGATGAGCAAGACGATGTTGAAGACGATAAAACAGATGAGGAT 468 | |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 684 GGAAATAATGAGGCTGTAGATGAGCAAGACGACGTTGAAGACGATAAAACAGATGAGGAT 625 Query 469 ---GAAGAGGAGGGGGACAACGAAGATGGTGATGGGTATGATGATTATCAGGGTGACGAT 525 |||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 624 GAAGAAGAGGAGGAGGACAACGAAGATGGTGCTGGGTATGATGATTATCAGGGTGATGAT 565 Query 526 GGATCTATGGGGGGAAGTACCCTCGATCCTACTATTGATGGTAGTGAAAGTAATGGCGAA 585 ||||||||||||||||||||||||||||||||||| || ||||||||| | | ||||||| Sbjct 564 GGATCTATGGGGGGAAGTACCCTCGATCCTACTATAGACGGTAGTGAAGGCAGTGGCGAA 505 Query 586 GATTATGATTACAACAAGTGGAACGATGTAATTGTTGAAGAATATGGAATAGGAAATGTT 645 ||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 504 GATTACGATTACAACAAGTGGAACGATTTAATTATTGAAGAATATGGAATAGGAAATGTT 445 Query 646 GAGGAGAACGTCATTCTCATACCA 669 |||||| |||||||||||| |||| Sbjct 444 GAGGAGGACGTCATTCTCA-ACCA 422 > Ahg473700 jgi|Araly1|473700|fgenesh2_kg.1__3654__AT1G32505.1 Length=450 Score = 399 bits (216), Expect = 1e-110 Identities = 303/343 (88%), Gaps = 14/343 (4%) Strand=Plus/Minus Query 335 TCAAGACACTC-GAGAATAATGTCTCTAGGACTCATGGTGACGATGCTGAAAGTGACC-- 391 ||||| ||||| | |||||||| | |||||||| |||||||||||||||||||||||| Sbjct 450 TCAAGGCACTCTG-GAATAATGACCCTAGGACTGATGGTGACGATGCTGAAAGTGACCGT 392 Query 392 ----GT----GT--TTCAAATGTTGATGAAAATAATGAGGCCGTAGATGAGCAAGACGAT 441 || || ||||||||| |||| ||||||||||||||||||||| ||| |||| Sbjct 391 GTGTGTGGGAGTGCTTCAAATGTGGATGCAAATAATGAGGCCGTAGATGAACAACACGAC 332 Query 442 GTTGAAGACGATAAAACAGATGAGGATGAAGAGGAGGGGGACAACGAAGATGGTGATGGG 501 || |||| ||||||||||||||||||||| |||||| ||||| |||||||||||||||| Sbjct 331 GTACAAGATGATAAAACAGATGAGGATGAAAAGGAGGAGGACACCGAAGATGGTGATGGG 272 Query 502 TATGATGATTATCAGGGTGACGATGGATCTATGGGGGGAAGTACCCTCGATCCTACTATT 561 |||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| Sbjct 271 TATGATGATTATCAGGGTGACGATGGATCTATGGGGAGAAGTACCCTCGATCATACTATA 212 Query 562 GATGGTAGTGAAAGTAATGGCGAAGATTATGATTACAACAAGTGGAACGATGTAATTGTT 621 || | ||||||| ||| |||||||||||| ||||||||||||||||||||||||||||| Sbjct 211 GACGATAGTGAATGTAGTGGCGAAGATTACGATTACAACAAGTGGAACGATGTAATTGTA 152 Query 622 GAAGAATATGGAATAGGAAATGTTGAGGAGAACGTCATTCTCA 664 ||||||||||||||||| |||||||||||| |||||||||||| Sbjct 151 GAAGAATATGGAATAGGGAATGTTGAGGAGGACGTCATTCTCA 109 > Ahg484914 jgi|Araly1|484914|fgenesh2_kg.5__906__AT2G17460.1 Length=878 Score = 385 bits (208), Expect = 3e-106 Identities = 334/390 (86%), Gaps = 27/390 (7%) Strand=Plus/Minus Query 174 CAATCCCATAATTAGTTACTGGATGCCGGGAGAGATGTTAGTGATGATAGATACTAAACG 233 |||||| |||||||||||||||||||||||| |||||| |||||||||||| | |||||| Sbjct 878 CAATCCAATAATTAGTTACTGGATGCCGGGAAAGATGTCAGTGATGATAGAAAGTAAACG 819 Query 234 CCTTCCTGTCTACATTGACAGTCAAGTGGGGTTGAATACGTTCTTTATGATTCGTGGTAG 293 || ||||||||||||||||| |||| || | | | ||| ||||||||||| | Sbjct 818 CCCTCCTGTCTACATTGACAATCAA------ATG---A-G-T-TTT-TGATTCGTGGTGG 772 Query 294 GTATCCTTCTCTCAACTTGTTTGTCTCTTTCATTACAACCGTCAAGACACTCGAGAATAA 353 | ||||| | ||| ||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 771 GGATCCTAGTGTCACCTTGTTTGTCTCTTTCATTACAACCGTCAAGGCACTCGGGAATAC 712 Query 354 TGTCTCTAGGACTC-ATGGTGACGA--T-GC-TGAAAG-T-GACCGTGTTTCAAATGTTG 406 |||| ||||||| | ||||||| || | | || | | || ||| ||||||||| | Sbjct 711 TGTCCCTAGGAC-CGATGGTGA-GAGTTACCGTGTGTGTTGGA--GTGCTTCAAATGTAG 656 Query 407 ATGAAAATAATGAGGCCGTAGATGAGCAAGACGATGTTGAAGACGATAAAACAGATGAGG 466 ||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 655 ATGGAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGACGATAAAACAGATGAGG 596 Query 467 AT---GAAGAGGAGGGGGACAACGAAGATGGTGATGGGTATGATGATTATCAGGGTGACG 523 || |||||||||| ||||||||||||||||| |||||||||||||||||||||||| | Sbjct 595 ATGAAGAAGAGGAGGAGGACAACGAAGATGGTGCTGGGTATGATGATTATCAGGGTGATG 536 Query 524 ATGGATCTATGGGGGGAAGTACCCTCGATC 553 |||||||||||||||||||||||||||||| Sbjct 535 ATGGATCTATGGGGGGAAGTACCCTCGATC 506 > Ahg497174 jgi|Araly1|497174|fgenesh2_kg.26__9__AT2G17460.1 Length=842 Score = 379 bits (205), Expect = 1e-104 Identities = 331/388 (85%), Gaps = 23/388 (6%) Strand=Plus/Minus Query 174 CAATCCCATAATTAGTTACTGGATGCCGGGAGAGATGTTAGTGATGATAGATACTAAACG 233 |||||| |||||||||||||||||||||||| |||||| |||||||||||| | |||| | Sbjct 842 CAATCCAATAATTAGTTACTGGATGCCGGGAAAGATGTCAGTGATGATAGAAAGTAAATG 783 Query 234 CCTTCCTGTCTACATTGACAGTCAAGTGGGGTTGAATACGTTCTTTATGATTCGTGGTAG 293 || |||||| |||||||||| |||| || | | | ||| ||||||||||| | Sbjct 782 CCCTCCTGTATACATTGACAATCAA------ATG---A-G-T-TTT-TGATTCGTGGTGG 736 Query 294 GTATCCTTCTCTCAACTTGTTTGTCTCTTTCATTACAACCGTCAAGACACTCGAGAATAA 353 | ||||| | ||| ||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 735 GGATCCTAGTGTCACCTTGTTTGTCTCTTTCATTACAACCGTCAAGGCACTCGGGAATAC 676 Query 354 TGTCTCTAGGACTC-ATGGTGACGA--T-GC-TGAAAGTGACCGTGTTTCAAATGTTGAT 408 |||| ||||||| | ||||||| || | | || ||| ||| ||||||||| ||| Sbjct 675 TGTCCCTAGGAC-CGATGGTGA-GAGTTACCGTGTGTGTGGGAGTGCTTCAAATGTAGAT 618 Query 409 GAAAATAATGAGGCCGTAGATGAGCAAGACGATGTTGAAGACGATAAAACAGATGAGGAT 468 | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 617 GGAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGACGATAAAACAGATGAGGAT 558 Query 469 ---GAAGAGGAGGGGGACAACGAAGATGGTGATGGGTATGATGATTATCAGGGTGACGAT 525 |||||||||| ||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 557 GAAGAAGAGGAGGAGGACAACGAAGATGGTGCTGGGTATGATGATTATCAGGGTGATGAT 498 Query 526 GGATCTATGGGGGGAAGTACCCTCGATC 553 |||||||||||||||||||||||||||| Sbjct 497 GGATCTATGGGGGGAAGTACCCTCGATC 470 > Ahg481538 jgi|Araly1|481538|fgenesh2_kg.4__598__AT2G17460.1 Length=829 Score = 302 bits (163), Expect = 3e-81 Identities = 319/388 (82%), Gaps = 36/388 (9%) Strand=Plus/Minus Query 174 CAATCCCATAATTAGTTACTGGATGCCGGGAGAGATGTTAGTGATGATAGATACTAAACG 233 |||||| |||||||||||||||||||||||| |||||| |||||||||||| | |||||| Sbjct 829 CAATCCAATAATTAGTTACTGGATGCCGGGAAAGATGTCAGTGATGATAGAAAGTAAACG 770 Query 234 CCTTCCTGTCTACATTGACAGTCAAGTGGGGTTGAATACGTTCTTTATGATTCGTGGTAG 293 || |||||| |||||||||| || | ||| | | ||| ||||||||||| | Sbjct 769 CCCTCCTGTATACATTGACAATC-A---------AAT--GAT-TTT-TGATTCGTGGTGG 724 Query 294 GTATCCTTCTCTCAACTTGTTTGTCTCTTTCATTACAACCGTCAAGACACTCGAGAATAA 353 | ||||| | ||| |||||||||||| | || ||| | | |||||| ||||| Sbjct 723 GGATCCTAGTGTCACCTTGTTTGTCTC--T--TT-CAA--G----G-CACTCGGGAATAC 676 Query 354 TGTCTCTAGGACTC-ATGGTGACGA--T-GC-TGAAAGTGACCGTGTTTCAAATGTTGAT 408 |||| ||||||| | ||||||| || | | || ||| ||| ||||||||| ||| Sbjct 675 TGTCCCTAGGAC-CGATGGTGA-GAGTTACCGTGTGTGTGGGAGTGCTTCAAATGTAGAT 618 Query 409 GAAAATAATGAGGCCGTAGATGAGCAAGACGATGTTGAAGACGATAAAACAGATGAGGAT 468 | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 617 GGAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGACGATAAAACAGATGAGGAT 558 Query 469 ---GAAGAGGAGGGGGACAACGAAGATGGTGATGGGTATGATGATTATCAGGGTGACGAT 525 |||||||||| ||| ||||||||||||| |||||||||||||||||||||||| ||| Sbjct 557 GAAGAAGAGGAGGAGGAAAACGAAGATGGTGCTGGGTATGATGATTATCAGGGTGATGAT 498 Query 526 GGATCTATGGGGGGAAGTACCCTCGATC 553 |||||||||||||||||||||||||||| Sbjct 497 GGATCTATGGGGGGAAGTACCCTCGATC 470 > Ahg479985 jgi|Araly1|479985|fgenesh2_kg.3__2686__AT2G17460.1 Length=904 Score = 302 bits (163), Expect = 3e-81 Identities = 322/392 (82%), Gaps = 37/392 (9%) Strand=Plus/Minus Query 174 CAATCCCATAATTAGTTACTGGATGCCGGGAGAGATGTTAGTGATGATAGATACTAAACG 233 |||||| |||||||||||||||||||||||| |||||| |||||||||||| | |||||| Sbjct 904 CAATCCAATAATTAGTTACTGGATGCCGGGAAAGATGTCAGTGATGATAGAAAGTAAACG 845 Query 234 CCTTCCTGTCTACATTGACAGTCAAGTGGGGTTGAATACGTTCTTTATGATTCGTGGTAG 293 || |||||| |||||||||| || | ||| | | ||| | ||||||||| | Sbjct 844 CCCTCCTGTATACATTGACAATC-A---------AAT--GAT-TTT-TCATTCGTGGTGG 799 Query 294 GTATCCTTCTCTCAACTTGTTTGTCTCTTTCATTACAACCGTCAAGACACTCGAGAATAA 353 | ||||| | ||| |||||||||||| | || | | ||| |||||| ||||| Sbjct 798 GGATCCTAGTGTCACCTTGTTTGTCTC--T--TT-C-A-----AAG-CACTCGGGAATAC 751 Query 354 TGTCTCTAGGACTC-ATGGTGACGA--T-GC-TGAAAGTGACCGTGTTTCAAATGTTGAT 408 |||| ||||||| | ||||||| || | | || ||| ||| ||||||||| ||| Sbjct 750 TGTCCCTAGGAC-CGATGGTGA-GAGTTACCGTGTGTGTGGGAGTGCTTCAAATGTAGAT 693 Query 409 GAAAATAATGAGGCCGTAGATGAGCAAGACGATGTTGAAGACGATAAAACAGATGAGGAT 468 | |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 692 GGAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGACGATAAAACAGATGAGGAT 633 Query 469 GAAGAGGAGG-GG-G-ACAACGAAGATGGTGATGGGTATGATGATTATCAGGGTGACGAT 525 ||||| |||| || | ||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 632 GAAGAAGAGGAGGAGGACAACGAAGATGGTGCTGGGTATGATGATTATCAGGGTGATGAT 573 Query 526 GGATCTATGGGGGG-AAGTACCCTCGATCCTA 556 |||||||||||||| ||||||||||||||||| Sbjct 572 GGATCTATGGGGGGGAAGTACCCTCGATCCTA 541 > Ahg473336 jgi|Araly1|473336|fgenesh2_kg.1__3290__AT2G17460.1 Length=829 Score = 296 bits (160), Expect = 1e-79 Identities = 318/388 (82%), Gaps = 36/388 (9%) Strand=Plus/Minus Query 174 CAATCCCATAATTAGTTACTGGATGCCGGGAGAGATGTTAGTGATGATAGATACTAAACG 233 |||||| |||||||||||||||||||||||| |||||| |||||||||||| | |||||| Sbjct 829 CAATCCAATAATTAGTTACTGGATGCCGGGAAAGATGTCAGTGATGATAGAAAGTAAACG 770 Query 234 CCTTCCTGTCTACATTGACAGTCAAGTGGGGTTGAATACGTTCTTTATGATTCGTGGTAG 293 || |||||| |||||||||| || | ||| | | ||| ||||||||||| | Sbjct 769 CCCTCCTGTATACATTGACAATC-A---------AAT--GAT-TTT-TGATTCGTGGTGG 724 Query 294 GTATCCTTCTCTCAACTTGTTTGTCTCTTTCATTACAACCGTCAAGACACTCGAGAATAA 353 | ||||| | ||| |||||||||||| | || ||| | | |||||| ||||| Sbjct 723 GGATCCTAGTGTCACCTTGTTTGTCTC--T--TT-CAA--G----G-CACTCGGGAATAC 676 Query 354 TGTCTCTAGGACTC-ATGGTGACGA--T-GC-TGAAAGTGACCGTGTTTCAAATGTTGAT 408 |||| ||||||| | ||||||| || | | || ||| ||| ||||||||| ||| Sbjct 675 TGTCCCTAGGAC-CGATGGTGA-GAGTTACCGTGTGTGTGGGAGTGCTTCAAATGTAGAT 618 Query 409 GAAAATAATGAGGCCGTAGATGAGCAAGACGATGTTGAAGACGATAAAACAGATGAGGAT 468 | |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 617 GGAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGATGATAAAACAGATGAGGAT 558 Query 469 ---GAAGAGGAGGGGGACAACGAAGATGGTGATGGGTATGATGATTATCAGGGTGACGAT 525 |||||||||| ||| ||||||||||||| |||||||||||||||||||||||| ||| Sbjct 557 GAAGAAGAGGAGGAGGAAAACGAAGATGGTGCTGGGTATGATGATTATCAGGGTGATGAT 498 Query 526 GGATCTATGGGGGGAAGTACCCTCGATC 553 |||||||||||||||||||||||||||| Sbjct 497 GGATCTATGGGGGGAAGTACCCTCGATC 470 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 26991025236 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5