BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55400.1
Length=733
Score E
Sequences producing significant alignments: (Bits) Value
Ahg481664 jgi|Araly1|481664|fgenesh2_kg.4__724__AT2G17460.1 544 5e-154
Ahg473700 jgi|Araly1|473700|fgenesh2_kg.1__3654__AT1G32505.1 399 1e-110
Ahg484914 jgi|Araly1|484914|fgenesh2_kg.5__906__AT2G17460.1 385 3e-106
Ahg497174 jgi|Araly1|497174|fgenesh2_kg.26__9__AT2G17460.1 379 1e-104
Ahg481538 jgi|Araly1|481538|fgenesh2_kg.4__598__AT2G17460.1 302 3e-81
Ahg479985 jgi|Araly1|479985|fgenesh2_kg.3__2686__AT2G17460.1 302 3e-81
Ahg473336 jgi|Araly1|473336|fgenesh2_kg.1__3290__AT2G17460.1 296 1e-79
> Ahg481664 jgi|Araly1|481664|fgenesh2_kg.4__724__AT2G17460.1
Length=909
Score = 544 bits (294), Expect = 5e-154
Identities = 438/504 (87%), Gaps = 24/504 (5%)
Strand=Plus/Minus
Query 174 CAATCCCATAATTAGTTACTGGATGCCGGGAGAGATGTTAGTGATGATAGATACTAAACG 233
|||||| |||||||||||||||||||||||| |||||| |||||||||||| | ||||||
Sbjct 909 CAATCCAATAATTAGTTACTGGATGCCGGGAAAGATGTCAGTGATGATAGAAAGTAAACG 850
Query 234 CCTTCCTGTCTACATTGACAGTCAAGTGGGGTTGAATACGTTCTTTATGATTCGTGGTAG 293
|| |||||| |||||||||| |||| || | | | ||| ||||||||||| |
Sbjct 849 CCCTCCTGTATACATTGACAATCAA------ATG---A-G-T-TTT-TGATTCGTGGTGG 803
Query 294 GTATCCTTCTCTCAACTTGTTTGTCTCTTTCATTACAACCGTCAAGACACTCGAGAATAA 353
| ||||| | ||| ||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 802 GGATCCTAGTGTCACCTTGTTTGTCTCTTTCATTACAACCGTCAAGGCACTCGGGAATAC 743
Query 354 TGTCTCTAGGACTC-ATGGTGACGA--T-GC-TGAAAGTGACCGTGTTTCAAATGTTGAT 408
|||| ||||||| | ||||||| || | | || ||| ||||||||||||| |||
Sbjct 742 TGTCCCTAGGAC-CGATGGTGA-GAGTTACCGTGTGTGTGGGAGTGTTTCAAATGTAGAT 685
Query 409 GAAAATAATGAGGCCGTAGATGAGCAAGACGATGTTGAAGACGATAAAACAGATGAGGAT 468
| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 684 GGAAATAATGAGGCTGTAGATGAGCAAGACGACGTTGAAGACGATAAAACAGATGAGGAT 625
Query 469 ---GAAGAGGAGGGGGACAACGAAGATGGTGATGGGTATGATGATTATCAGGGTGACGAT 525
|||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 624 GAAGAAGAGGAGGAGGACAACGAAGATGGTGCTGGGTATGATGATTATCAGGGTGATGAT 565
Query 526 GGATCTATGGGGGGAAGTACCCTCGATCCTACTATTGATGGTAGTGAAAGTAATGGCGAA 585
||||||||||||||||||||||||||||||||||| || ||||||||| | | |||||||
Sbjct 564 GGATCTATGGGGGGAAGTACCCTCGATCCTACTATAGACGGTAGTGAAGGCAGTGGCGAA 505
Query 586 GATTATGATTACAACAAGTGGAACGATGTAATTGTTGAAGAATATGGAATAGGAAATGTT 645
||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 504 GATTACGATTACAACAAGTGGAACGATTTAATTATTGAAGAATATGGAATAGGAAATGTT 445
Query 646 GAGGAGAACGTCATTCTCATACCA 669
|||||| |||||||||||| ||||
Sbjct 444 GAGGAGGACGTCATTCTCA-ACCA 422
> Ahg473700 jgi|Araly1|473700|fgenesh2_kg.1__3654__AT1G32505.1
Length=450
Score = 399 bits (216), Expect = 1e-110
Identities = 303/343 (88%), Gaps = 14/343 (4%)
Strand=Plus/Minus
Query 335 TCAAGACACTC-GAGAATAATGTCTCTAGGACTCATGGTGACGATGCTGAAAGTGACC-- 391
||||| ||||| | |||||||| | |||||||| ||||||||||||||||||||||||
Sbjct 450 TCAAGGCACTCTG-GAATAATGACCCTAGGACTGATGGTGACGATGCTGAAAGTGACCGT 392
Query 392 ----GT----GT--TTCAAATGTTGATGAAAATAATGAGGCCGTAGATGAGCAAGACGAT 441
|| || ||||||||| |||| ||||||||||||||||||||| ||| ||||
Sbjct 391 GTGTGTGGGAGTGCTTCAAATGTGGATGCAAATAATGAGGCCGTAGATGAACAACACGAC 332
Query 442 GTTGAAGACGATAAAACAGATGAGGATGAAGAGGAGGGGGACAACGAAGATGGTGATGGG 501
|| |||| ||||||||||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 331 GTACAAGATGATAAAACAGATGAGGATGAAAAGGAGGAGGACACCGAAGATGGTGATGGG 272
Query 502 TATGATGATTATCAGGGTGACGATGGATCTATGGGGGGAAGTACCCTCGATCCTACTATT 561
|||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 271 TATGATGATTATCAGGGTGACGATGGATCTATGGGGAGAAGTACCCTCGATCATACTATA 212
Query 562 GATGGTAGTGAAAGTAATGGCGAAGATTATGATTACAACAAGTGGAACGATGTAATTGTT 621
|| | ||||||| ||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 211 GACGATAGTGAATGTAGTGGCGAAGATTACGATTACAACAAGTGGAACGATGTAATTGTA 152
Query 622 GAAGAATATGGAATAGGAAATGTTGAGGAGAACGTCATTCTCA 664
||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 151 GAAGAATATGGAATAGGGAATGTTGAGGAGGACGTCATTCTCA 109
> Ahg484914 jgi|Araly1|484914|fgenesh2_kg.5__906__AT2G17460.1
Length=878
Score = 385 bits (208), Expect = 3e-106
Identities = 334/390 (86%), Gaps = 27/390 (7%)
Strand=Plus/Minus
Query 174 CAATCCCATAATTAGTTACTGGATGCCGGGAGAGATGTTAGTGATGATAGATACTAAACG 233
|||||| |||||||||||||||||||||||| |||||| |||||||||||| | ||||||
Sbjct 878 CAATCCAATAATTAGTTACTGGATGCCGGGAAAGATGTCAGTGATGATAGAAAGTAAACG 819
Query 234 CCTTCCTGTCTACATTGACAGTCAAGTGGGGTTGAATACGTTCTTTATGATTCGTGGTAG 293
|| ||||||||||||||||| |||| || | | | ||| ||||||||||| |
Sbjct 818 CCCTCCTGTCTACATTGACAATCAA------ATG---A-G-T-TTT-TGATTCGTGGTGG 772
Query 294 GTATCCTTCTCTCAACTTGTTTGTCTCTTTCATTACAACCGTCAAGACACTCGAGAATAA 353
| ||||| | ||| ||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 771 GGATCCTAGTGTCACCTTGTTTGTCTCTTTCATTACAACCGTCAAGGCACTCGGGAATAC 712
Query 354 TGTCTCTAGGACTC-ATGGTGACGA--T-GC-TGAAAG-T-GACCGTGTTTCAAATGTTG 406
|||| ||||||| | ||||||| || | | || | | || ||| ||||||||| |
Sbjct 711 TGTCCCTAGGAC-CGATGGTGA-GAGTTACCGTGTGTGTTGGA--GTGCTTCAAATGTAG 656
Query 407 ATGAAAATAATGAGGCCGTAGATGAGCAAGACGATGTTGAAGACGATAAAACAGATGAGG 466
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 655 ATGGAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGACGATAAAACAGATGAGG 596
Query 467 AT---GAAGAGGAGGGGGACAACGAAGATGGTGATGGGTATGATGATTATCAGGGTGACG 523
|| |||||||||| ||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 595 ATGAAGAAGAGGAGGAGGACAACGAAGATGGTGCTGGGTATGATGATTATCAGGGTGATG 536
Query 524 ATGGATCTATGGGGGGAAGTACCCTCGATC 553
||||||||||||||||||||||||||||||
Sbjct 535 ATGGATCTATGGGGGGAAGTACCCTCGATC 506
> Ahg497174 jgi|Araly1|497174|fgenesh2_kg.26__9__AT2G17460.1
Length=842
Score = 379 bits (205), Expect = 1e-104
Identities = 331/388 (85%), Gaps = 23/388 (6%)
Strand=Plus/Minus
Query 174 CAATCCCATAATTAGTTACTGGATGCCGGGAGAGATGTTAGTGATGATAGATACTAAACG 233
|||||| |||||||||||||||||||||||| |||||| |||||||||||| | |||| |
Sbjct 842 CAATCCAATAATTAGTTACTGGATGCCGGGAAAGATGTCAGTGATGATAGAAAGTAAATG 783
Query 234 CCTTCCTGTCTACATTGACAGTCAAGTGGGGTTGAATACGTTCTTTATGATTCGTGGTAG 293
|| |||||| |||||||||| |||| || | | | ||| ||||||||||| |
Sbjct 782 CCCTCCTGTATACATTGACAATCAA------ATG---A-G-T-TTT-TGATTCGTGGTGG 736
Query 294 GTATCCTTCTCTCAACTTGTTTGTCTCTTTCATTACAACCGTCAAGACACTCGAGAATAA 353
| ||||| | ||| ||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 735 GGATCCTAGTGTCACCTTGTTTGTCTCTTTCATTACAACCGTCAAGGCACTCGGGAATAC 676
Query 354 TGTCTCTAGGACTC-ATGGTGACGA--T-GC-TGAAAGTGACCGTGTTTCAAATGTTGAT 408
|||| ||||||| | ||||||| || | | || ||| ||| ||||||||| |||
Sbjct 675 TGTCCCTAGGAC-CGATGGTGA-GAGTTACCGTGTGTGTGGGAGTGCTTCAAATGTAGAT 618
Query 409 GAAAATAATGAGGCCGTAGATGAGCAAGACGATGTTGAAGACGATAAAACAGATGAGGAT 468
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 617 GGAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGACGATAAAACAGATGAGGAT 558
Query 469 ---GAAGAGGAGGGGGACAACGAAGATGGTGATGGGTATGATGATTATCAGGGTGACGAT 525
|||||||||| ||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 557 GAAGAAGAGGAGGAGGACAACGAAGATGGTGCTGGGTATGATGATTATCAGGGTGATGAT 498
Query 526 GGATCTATGGGGGGAAGTACCCTCGATC 553
||||||||||||||||||||||||||||
Sbjct 497 GGATCTATGGGGGGAAGTACCCTCGATC 470
> Ahg481538 jgi|Araly1|481538|fgenesh2_kg.4__598__AT2G17460.1
Length=829
Score = 302 bits (163), Expect = 3e-81
Identities = 319/388 (82%), Gaps = 36/388 (9%)
Strand=Plus/Minus
Query 174 CAATCCCATAATTAGTTACTGGATGCCGGGAGAGATGTTAGTGATGATAGATACTAAACG 233
|||||| |||||||||||||||||||||||| |||||| |||||||||||| | ||||||
Sbjct 829 CAATCCAATAATTAGTTACTGGATGCCGGGAAAGATGTCAGTGATGATAGAAAGTAAACG 770
Query 234 CCTTCCTGTCTACATTGACAGTCAAGTGGGGTTGAATACGTTCTTTATGATTCGTGGTAG 293
|| |||||| |||||||||| || | ||| | | ||| ||||||||||| |
Sbjct 769 CCCTCCTGTATACATTGACAATC-A---------AAT--GAT-TTT-TGATTCGTGGTGG 724
Query 294 GTATCCTTCTCTCAACTTGTTTGTCTCTTTCATTACAACCGTCAAGACACTCGAGAATAA 353
| ||||| | ||| |||||||||||| | || ||| | | |||||| |||||
Sbjct 723 GGATCCTAGTGTCACCTTGTTTGTCTC--T--TT-CAA--G----G-CACTCGGGAATAC 676
Query 354 TGTCTCTAGGACTC-ATGGTGACGA--T-GC-TGAAAGTGACCGTGTTTCAAATGTTGAT 408
|||| ||||||| | ||||||| || | | || ||| ||| ||||||||| |||
Sbjct 675 TGTCCCTAGGAC-CGATGGTGA-GAGTTACCGTGTGTGTGGGAGTGCTTCAAATGTAGAT 618
Query 409 GAAAATAATGAGGCCGTAGATGAGCAAGACGATGTTGAAGACGATAAAACAGATGAGGAT 468
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 617 GGAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGACGATAAAACAGATGAGGAT 558
Query 469 ---GAAGAGGAGGGGGACAACGAAGATGGTGATGGGTATGATGATTATCAGGGTGACGAT 525
|||||||||| ||| ||||||||||||| |||||||||||||||||||||||| |||
Sbjct 557 GAAGAAGAGGAGGAGGAAAACGAAGATGGTGCTGGGTATGATGATTATCAGGGTGATGAT 498
Query 526 GGATCTATGGGGGGAAGTACCCTCGATC 553
||||||||||||||||||||||||||||
Sbjct 497 GGATCTATGGGGGGAAGTACCCTCGATC 470
> Ahg479985 jgi|Araly1|479985|fgenesh2_kg.3__2686__AT2G17460.1
Length=904
Score = 302 bits (163), Expect = 3e-81
Identities = 322/392 (82%), Gaps = 37/392 (9%)
Strand=Plus/Minus
Query 174 CAATCCCATAATTAGTTACTGGATGCCGGGAGAGATGTTAGTGATGATAGATACTAAACG 233
|||||| |||||||||||||||||||||||| |||||| |||||||||||| | ||||||
Sbjct 904 CAATCCAATAATTAGTTACTGGATGCCGGGAAAGATGTCAGTGATGATAGAAAGTAAACG 845
Query 234 CCTTCCTGTCTACATTGACAGTCAAGTGGGGTTGAATACGTTCTTTATGATTCGTGGTAG 293
|| |||||| |||||||||| || | ||| | | ||| | ||||||||| |
Sbjct 844 CCCTCCTGTATACATTGACAATC-A---------AAT--GAT-TTT-TCATTCGTGGTGG 799
Query 294 GTATCCTTCTCTCAACTTGTTTGTCTCTTTCATTACAACCGTCAAGACACTCGAGAATAA 353
| ||||| | ||| |||||||||||| | || | | ||| |||||| |||||
Sbjct 798 GGATCCTAGTGTCACCTTGTTTGTCTC--T--TT-C-A-----AAG-CACTCGGGAATAC 751
Query 354 TGTCTCTAGGACTC-ATGGTGACGA--T-GC-TGAAAGTGACCGTGTTTCAAATGTTGAT 408
|||| ||||||| | ||||||| || | | || ||| ||| ||||||||| |||
Sbjct 750 TGTCCCTAGGAC-CGATGGTGA-GAGTTACCGTGTGTGTGGGAGTGCTTCAAATGTAGAT 693
Query 409 GAAAATAATGAGGCCGTAGATGAGCAAGACGATGTTGAAGACGATAAAACAGATGAGGAT 468
| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 692 GGAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGACGATAAAACAGATGAGGAT 633
Query 469 GAAGAGGAGG-GG-G-ACAACGAAGATGGTGATGGGTATGATGATTATCAGGGTGACGAT 525
||||| |||| || | ||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 632 GAAGAAGAGGAGGAGGACAACGAAGATGGTGCTGGGTATGATGATTATCAGGGTGATGAT 573
Query 526 GGATCTATGGGGGG-AAGTACCCTCGATCCTA 556
|||||||||||||| |||||||||||||||||
Sbjct 572 GGATCTATGGGGGGGAAGTACCCTCGATCCTA 541
> Ahg473336 jgi|Araly1|473336|fgenesh2_kg.1__3290__AT2G17460.1
Length=829
Score = 296 bits (160), Expect = 1e-79
Identities = 318/388 (82%), Gaps = 36/388 (9%)
Strand=Plus/Minus
Query 174 CAATCCCATAATTAGTTACTGGATGCCGGGAGAGATGTTAGTGATGATAGATACTAAACG 233
|||||| |||||||||||||||||||||||| |||||| |||||||||||| | ||||||
Sbjct 829 CAATCCAATAATTAGTTACTGGATGCCGGGAAAGATGTCAGTGATGATAGAAAGTAAACG 770
Query 234 CCTTCCTGTCTACATTGACAGTCAAGTGGGGTTGAATACGTTCTTTATGATTCGTGGTAG 293
|| |||||| |||||||||| || | ||| | | ||| ||||||||||| |
Sbjct 769 CCCTCCTGTATACATTGACAATC-A---------AAT--GAT-TTT-TGATTCGTGGTGG 724
Query 294 GTATCCTTCTCTCAACTTGTTTGTCTCTTTCATTACAACCGTCAAGACACTCGAGAATAA 353
| ||||| | ||| |||||||||||| | || ||| | | |||||| |||||
Sbjct 723 GGATCCTAGTGTCACCTTGTTTGTCTC--T--TT-CAA--G----G-CACTCGGGAATAC 676
Query 354 TGTCTCTAGGACTC-ATGGTGACGA--T-GC-TGAAAGTGACCGTGTTTCAAATGTTGAT 408
|||| ||||||| | ||||||| || | | || ||| ||| ||||||||| |||
Sbjct 675 TGTCCCTAGGAC-CGATGGTGA-GAGTTACCGTGTGTGTGGGAGTGCTTCAAATGTAGAT 618
Query 409 GAAAATAATGAGGCCGTAGATGAGCAAGACGATGTTGAAGACGATAAAACAGATGAGGAT 468
| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 617 GGAAATAATGAGGCCGTAGATGAGCAAGACGACGTTGAAGATGATAAAACAGATGAGGAT 558
Query 469 ---GAAGAGGAGGGGGACAACGAAGATGGTGATGGGTATGATGATTATCAGGGTGACGAT 525
|||||||||| ||| ||||||||||||| |||||||||||||||||||||||| |||
Sbjct 557 GAAGAAGAGGAGGAGGAAAACGAAGATGGTGCTGGGTATGATGATTATCAGGGTGATGAT 498
Query 526 GGATCTATGGGGGGAAGTACCCTCGATC 553
||||||||||||||||||||||||||||
Sbjct 497 GGATCTATGGGGGGAAGTACCCTCGATC 470
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26991025236
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5