BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55430.1
Length=1974
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924050 jgi|Araly1|924050|scaffold_105331.1 939 0.0
> Ahg924050 jgi|Araly1|924050|scaffold_105331.1
Length=614
Score = 939 bits (508), Expect = 0.0
Identities = 592/629 (94%), Gaps = 19/629 (3%)
Strand=Plus/Plus
Query 5 AACCACACCCTCTTTATTTTGTGCCACCTCCTTATTTAACTAGAACTAAACCTCCATGTC 64
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACCACACCCTCTTTATTTTATGCCACCTCCTTATTTAACTAGAACTAAACCTCCATGTC 60
Query 65 GTCTGTCCGATCCGGCTCAGCCCCACAAGCTTTGCCGACGGCGACAACCAACTCATCCTC 124
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 61 GTCTGTCTGATCCGGCTCAGCCCCACAAGCTTTGCCGACGGCGACGACCAACTCATCCTC 120
Query 125 CACTTTCTATCTGCTTTACGTGCAAAGGCAAACACTTGAAGCGCAGTAAGTATTATTACT 184
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 121 CACTTTCTATCTGCTTTACGTGCAAAGGCAAACACTTGAAGCGCAGTAAATACTATTACT 180
Query 185 ACTGTGCTACTTGCAATTTGGAATTTCACAGAGGCTGTCACGTCTTTCTGCCGGAGATCA 244
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 181 ACTGTGCTACTTGCAATTTGGAATTTCACAGAGGTTGTCACATCTTTCTGCCGGAGATCA 240
Query 245 GAAGCGCTTTTCATCCCTCTCACCCCCTCACCTTCACCGCCTTAGATCCTGAATTTAATG 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GAAGCGCTTTTCATCCCTCTCACCCCCTCACCTTCACCGCCTTAGATCCTGAATTTAATG 300
Query 305 CTTCTATCATACACCAAAATTGGAGGGACAGCTCCGCTTCAGAGGAATCTTCCGAAGAGT 364
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 301 CTTCTATCATACACCAAAATTGGAAGGACAGCTCCGCTTCAGAGGAATCTTCCGAAGAAT 360
Query 365 TGATAAACGAAGTTGTTGACTATGATCATGAAGACGCTGGTGATGATGCTGTTGCTAATG 424
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 TGATAAACGAAGTTGTTGACTATGATCATGAAGACGATGGTGATGATGCTGTTGCTAATG 420
Query 425 AAGACGATGATGAAGATGCTGTTCCTAATGATGACGATAATGGCGGTGGCGGTGGCGATA 484
|||| |||||||| ||| || |||| || ||||||||||||| || |
Sbjct 421 AAGAGGATGATGACGATAATGGG------GATG--GA-AATGGCGGTGGCGATG----T- 466
Query 485 TTTATGCTGTCGCTTATAATGATGGTGCCTCTTTGTCCTAT----GGAAATCACCTGAAA 540
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 467 TT-ATGCTGTCGCTTATAATGATGGTGCCTCTTTGTCCTATATATGGAAATCACCTGAAA 525
Query 541 TGCAAATGTTGTGCTTCTCCTTTAGAAAAGCTATATTATCATTGTTCTACCTGCAAGTTC 600
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 526 TGCAAATGTTGTGCTTCTCCTTTAGAAAAGCTATATTATCATTGTTCTATCTGCAAGTTC 585
Query 601 AATCTTAACTTGACTTGCTCGATGAGACC 629
|||||||||||||||||||||||||||||
Sbjct 586 AATCTTAACTTGACTTGCTCGATGAGACC 614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74199797260
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5