BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55450.2
Length=1225
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924051 jgi|Araly1|924051|scaffold_105332.1 1312 0.0
> Ahg924051 jgi|Araly1|924051|scaffold_105332.1
Length=976
Score = 1312 bits (710), Expect = 0.0
Identities = 776/808 (96%), Gaps = 4/808 (0%)
Strand=Plus/Plus
Query 246 CTTGCAGAGTATTTCGAGAAAGTTACAGCAACCGACATAAACGAAGCACAGTTAAAACGA 305
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 171 CTTGCAGAGTATTTCGAGAAAGTTATTGCAACCGACATAAACGAAGCACAGTTAAAACGA 230
Query 306 GCGGTAAAACACGAAAGAATCAGTTACCATCACACTCCCACAACAATGTCCGAAGACCAA 365
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 231 GCGGTAAAACACGAAAGAATCAGTTACCATCACACTCCGACAACAATGTCCGAAGACCAA 290
Query 366 ATGGTTGCTCTAGTCGGCGGAGATAACTCCGTTGATCTAATCGTGGCAGCACAAGCCGTT 425
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 291 ATGGTTGCTCTAGTCGGCGGAGATAACTCTGTTGATCTAATCGTGGCAGCACAAGCCGTT 350
Query 426 CACTACTTCGATCTCGCACCATTCTACAACGTAGCAAAACGTGTTCTTCGCAAAGAAGGA 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 CACTACTTCGATCTCGCACCATTCTACAACGTAGCAAAACGTGTTCTTCGCAAAGAAGGA 410
Query 486 GGATTAATCGCAGTTTTTGTCTACAACGACATAATCATCTCTCCTGAAGTTGATTCCATC 545
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 411 GGATTAATCGCAGTTTTTGTCTACAACGACATAATCATCTCCCCTGAAGTTGATTCCATC 470
Query 546 ATGAAACGTCTTGTGGACTCCACGTTCCCGTTTAGAACTCCTGTAATGAATCTTGCTTTC 605
||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 471 ATGAAACGTCTCGTGGACTCCACGTTTCCGTTTAGAACTCCGGTAATGAATCTTGCTTTC 530
Query 606 GACGGTTATAAAACGTTGCCGTTTCCGTTTGAAAGTATAGGGATGGGATCAGAAGGGAAG 665
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 531 GACGGTTACAAAACGTTGCCGTTTCCGTTTGAAAGTATAGGGATGGGGTCAGAAGGGAAG 590
Query 666 CCTATAATGCTTGACATTCCTCATAAGCTATCGCTTAAAGGGTTTATCGGTTTCTTGAGA 725
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 591 CCTATAATGCTTGACATTCCTCATAAGCTCTCGCTTAAAGGGTTTATCGGTTTCTTGAGA 650
Query 726 TCGTGGCAGCCCGCAATGAAAGCTAAAGAACGTGGAGTTGAGCTTGTGACTGAAGATTTG 785
|||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 651 TCGTGGCAACCCGCAATGAAAGCTAAAGAACGAGGAGTTGAGCTTGTAACTGAAGATTTG 710
Query 786 ATCTCCAAATTTGAAGATGCTTGGGGTGATGATGATGATGTTAAAGATATTTTCTACAAA 845
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 711 ATCTCTAAGTTTGAAGAAGCTTGGGGTGATGATGATGATGTTAAAGATATTTTCTACAAA 770
Query 846 GCTCATATGATTGTTGGAAAACTTTCGGCTTCAGATATAGAGCGGCATCGAAAGAGATTT 905
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 771 GCTCATATGATTGTTGGAAAACTTTCGGCTTCAGATATAGAGCGGCATCGAAAGAGATTT 830
Query 906 GA-TACGAACTGCGTAGTTACAACACTAAAGGATCA-TAACAACTCGGCTGTTATTGCTT 963
|| | ||||||| |||||| | |||||||||||| | ||||||||||||||||||||| |
Sbjct 831 GAAT-CGAACTGTGTAGTTGCGACACTAAAGGAT-AGTAACAACTCGGCTGTTATTGCCT 888
Query 964 CAGTGACTGCTGCTGCATTTGCTGGAGTGGCGGCTTACTGTGCTTACTCTGCAAGGAAGA 1023
||||||| ||||||||||||||||||||||||||||| ||||| || |||||||||||||
Sbjct 889 CAGTGACGGCTGCTGCATTTGCTGGAGTGGCGGCTTATTGTGCCTATTCTGCAAGGAAGA 948
Query 1024 ACAGTTAGATCCTTTGAAGGACAAAGAA 1051
||| |||||||||||| ||||||||||
Sbjct 949 ACACTTAGATCCTTTGGTGGACAAAGAA 976
Score = 281 bits (152), Expect = 7e-75
Identities = 165/171 (96%), Gaps = 2/171 (1%)
Strand=Plus/Plus
Query 48 AAGAAAACAGAGaaaaaaaCAATGGCTGCCTTGTCGGATAAGTTAGCGGATGCTTACCAG 107
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 AAGAAAACAGAG--GAAAACAATGGCTGCCTTGTCGGATAAGTTAGCGGATGCTTACCAG 59
Query 108 AACGCAAGGCCGAGATATCCGATCGATTGGTTCACGAAACTTGCTGCTCGAACCGGTCAG 167
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 60 AACGCAAGGCCGAGATATCCGATCGATTGGTTCACTAAACTTGCTGCTCGAACCGGTCAG 119
Query 168 CACAAATCAGCTTGGGATGTTGGTACTGGCAACGGTCAAGCAGCTATTGGT 218
|||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 120 CACAAATCAGCTTGGGATGTCGGTACTGGCAACGGTCAGGCAGCTATTGGT 170
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45747500400
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5