BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G55475.1

Length=1365
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg314765 jgi|Araly1|314765|fgenesh1_pm.C_scaffold_1003545           538    4e-152


> Ahg314765 jgi|Araly1|314765|fgenesh1_pm.C_scaffold_1003545
Length=363

 Score =  538 bits (291),  Expect = 4e-152
 Identities = 339/363 (93%), Gaps = 0/363 (0%)
 Strand=Plus/Plus

Query  464  ATGATCAACTGTTTAAAAGACTCAATACATGTTTTGATGAGTGTTTTGCTTTCCACTAGT  523
            |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  1    ATGATCAACTGTTTAAAAGACTCAATACATGTTTTGATGAGTGTTTTGCTATCTACTAGT  60

Query  524  GATGATGATGATGATCATGAAGAGATTCTCGAACATGTGGATGGTCTTACGAATGCTGAG  583
            |||||||||||||||||||||||| |||| |||| ||| ||||||| || ||||||||||
Sbjct  61   GATGATGATGATGATCATGAAGAGGTTCTTGAACTTGTCGATGGTCATAGGAATGCTGAG  120

Query  584  GATAGAGAAGAAGTAGATGCAAAGGAAGAAGAAGGTCAAATTGTTGGGGACACTCTCACT  643
            | |||||||||||||| |||||||||||| | ||||||||||||||| ||||||||||||
Sbjct  121  GTTAGAGAAGAAGTAGTTGCAAAGGAAGACGGAGGTCAAATTGTTGGTGACACTCTCACT  180

Query  644  CTCAAAAGTAGTCTTCGAAAGGTTGATTCAAATTCAACAGAAGCTGAGAAGAGGGAGAAG  703
            || ||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||
Sbjct  181  CTGAAAAGTAGTCTTCGAAAAGCGGATTCAAATTCAACAGAAGCTGAGAAGAGGGAGAAG  240

Query  704  AAGAAGGTACAATGGGTGGATGTGATTGGGAAGGAACTTGCTGAGATTCGAGAATTTGAA  763
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  241  AAGAAGGTACAATGGGTGGATGTGATTGGGAAGGAACTTGCTGAGATTCGAGAATTCGAA  300

Query  764  CCTAGTGATGAAGATGATATTGATTCTGATCGAGGCAAAACCTGTGTTTGTATTATCCTG  823
            |||||||| |||||||| ||||| |||||||| || ||||||||||||||| ||||||||
Sbjct  301  CCTAGTGAAGAAGATGACATTGACTCTGATCGGGGGAAAACCTGTGTTTGTGTTATCCTG  360

Query  824  TGA  826
            |||
Sbjct  361  TGA  363



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 51084708780


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5