BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55510.1
Length=1402
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924060 jgi|Araly1|924060|scaffold_105341.1 1796 0.0
> Ahg924060 jgi|Araly1|924060|scaffold_105341.1
Length=1100
Score = 1796 bits (972), Expect = 0.0
Identities = 1053/1093 (96%), Gaps = 1/1093 (0%)
Strand=Plus/Plus
Query 161 TTGTTGGTGGG-TTTGTGTAAATGGCGGCTCTTTTAGGCAGATCCTGCCGGAAACTGAGT 219
||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 TTGTTGGTGGGTTTTGTGTAAATGGCGGCTCTTTTAGGCAGATCCTTCCGGAAACTGAGT 60
Query 220 TTTCCGAGCTTGAGTCACGGAGCTAGGAGGGTATCGACGGAAACTGGAAAACCATTGAAT 279
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 TTTCCGAGCTTGAGTCACGGAGCTAGGAGGGTATCGACGGAAACTGGGAAACCATTGAAT 120
Query 280 CTATACTCTGCTATTAATCAAGCGCTTCACATCGCTTTGGACACCGATCCTCGGTCTTAT 339
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 121 CTATACTCTGCTATTAATCAAGCGCTTCACATCGCTTTGGATACCGATCCTCGGTCTTAT 180
Query 340 GTCTTTGGGGAAGACGTTGGCTTTGGTGGAGTCTTTCGCTGTACAACAGGTTTAGCTGAA 399
|| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 181 GTGTTTGGGGAAGATGTTGGCTTTGGTGGAGTCTTTCGCTGCACAACTGGTTTAGCTGAA 240
Query 400 CGATTCGGGAAAAACCGTGTCTTCAATACTCCTCTTTGTGAGCAGGGCATTGTTGGATTT 459
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 CGATTCGGGAAAAACCGCGTCTTCAATACTCCTCTTTGTGAGCAGGGCATTGTTGGATTT 300
Query 460 GGCATTGGTCTAGCAGCAATGGGTAATCGAGCAATTGTAGAGATTCAGTTTGCAGATTAT 519
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 301 GGCATTGGTCTAGCAGCAATGGGAAATCGAGCAATTGTGGAGATTCAGTTTGCGGATTAT 360
Query 520 ATATATCCTGCTTTTGATCAGATTGTTAATGAAGCTGCAAAGTTCAGATACCGAAGTGGT 579
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 361 ATATATCCTGCTTTTGATCAGATTGTTAATGAAGCGGCAAAATTCAGATACCGAAGTGGT 420
Query 580 AACCAATTCAACTGTGGAGGACTTACGATAAGAGCACCATATGGAGCAGTTGGTCATGGT 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AACCAATTCAACTGTGGAGGACTTACGATAAGAGCACCATATGGAGCAGTTGGTCATGGT 480
Query 640 GGACATTACCATTCACAATCCCCTGAAGCTTTCTTTTGCCATGTCCCTGGTATTAAGGTT 699
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 GGACATTACCATTCACAATCCCCTGAAGCTTTCTTTTGCCATGTTCCTGGTATTAAGGTT 540
Query 700 GTTATCCCTCGGAGTCCACGAGAAGCAAAGGGACTGTTGTTGTCATGTATCCGTGATCCA 759
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 GTTATCCCTCGAAGTCCACGAGAAGCAAAGGGACTGTTGTTGTCATGTATCCGTGATCCA 600
Query 760 AATCCCGTTGTTTTCTTCGAACCAAAGTGGCTGTATCGTCAAGCAGTAGAAGAAGTCCCT 819
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AATCCCGTTGTCTTCTTCGAACCAAAGTGGCTGTATCGTCAAGCAGTAGAAGAAGTCCCT 660
Query 820 GAGCATGACTATATGATACCTTTATCAGAAGCAGAGGTTATAAGAGAAGGCAATGACATT 879
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 661 GAGCATGACTATATGATACCTTTATCAGAAGCCGAGGTTATAAGAGAAGGCAATGACATA 720
Query 880 ACACTGGTTGGATGGGGAGCTCAGCTTACCGTTATGGAACAAGCTTGTCTGGACGCGGAA 939
|| || |||||||||||||||||||||||| ||||||||||||||||||||||||| |||
Sbjct 721 ACCCTTGTTGGATGGGGAGCTCAGCTTACCATTATGGAACAAGCTTGTCTGGACGCAGAA 780
Query 940 AAGGAAGGAATATCATGTGAACTGATAGATCTCAAGACACTGCTTCCTTGGGACAAAGAA 999
|||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 781 AAGGAAGGAATATCATGTGAACTGATAGATCTCAAGACTTTGCTTCCTTGGGATAAAGAA 840
Query 1000 ACCGTTGAGGCTTCAGTTAAAAAGACTGGCAGACTTCTTATAAGCCATGAAGCTCCTGTA 1059
||||| ||||| || |||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 841 ACCGTCGAGGCCTCGGTTAAAAAAACTGGAAGACTTCTTATAAGCCATGAAGCTCCTGTA 900
Query 1060 ACAGGAGGTTTTGGAGCAGAGATCTCTGCAACAATTCTGGAACGTTGCTTTTTGAAGTTA 1119
||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||
Sbjct 901 ACAGGAGGTTTTGGAGCAGAGATCTCTGCAACAATCCTCGAACGTTGCTTTTTAAAGTTA 960
Query 1120 GAAGCTCCAGTAAGCAGAGTTTGTGGTCTGGATACTCCATTTCCTCTTGTGTTTGAACCA 1179
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 961 GAAGCTCCAGTAAGCAGAGTTTGTGGACTGGATACTCCATTTCCTCTTGTGTTTGAGCCA 1020
Query 1180 TTCTACATGCCCACCAAGAACAAGATATTGGATGCAATCAAATCGACTGTGAATTACTAG 1239
|||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1021 TTCTACATGCCCACCAGGAACAAGATATTGGACGCGATCAAATCGACTGTGAATTACTAG 1080
Query 1240 CCGTACTATCTGT 1252
|||| ||||||||
Sbjct 1081 CCGTTCTATCTGT 1093
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52412177120
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5