BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55520.1
Length=1206
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474610 jgi|Araly1|474610|fgenesh2_kg.1__4564__AT1G55520.2 1886 0.0
Ahg478727 jgi|Araly1|478727|fgenesh2_kg.3__1428__AT3G13445.1 608 3e-173
> Ahg474610 jgi|Araly1|474610|fgenesh2_kg.1__4564__AT1G55520.2
Length=1198
Score = 1886 bits (1021), Expect = 0.0
Identities = 1145/1202 (95%), Gaps = 19/1202 (2%)
Strand=Plus/Plus
Query 18 GATCACAAATCTCATCCCCAGAG-A--GAGAACCCAGAGAGCGATATTGAAAATCAAAAC 74
||||||||||||||||||||||| | || | |||||||||||||||||||||||||
Sbjct 1 GATCACAAATCTCATCCCCAGAGAACCCAG-AGAGAGAGAGCGATATTGAAAATCAAAAC 59
Query 75 TCTCTCCTTTATATATAATCCCAATTTACAAATCTCTTTCCCTCTCTAAAAATTTCTTAT 134
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 TCTCTCCTTTATATATAAT-CCAATTTACAAATCTCTTTCCCTCTCTAAAAATTTCTCAT 118
Query 135 CTTTGTATAAAAAGCCTTCTCCTTTTTCAAATCATTCACCTTCCTTTCGCCTTTTCGGGG 194
||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||
Sbjct 119 CTTTGTATAAAAAGCCTACGCCTTTTTCAAATCATTCACCTTCCTTTCGCCTTTTTGGGG 178
Query 195 GAATTTCTTCCAATCTGTTGGGTTTACGAAACCCTAGATTTCGAAATTCCGGATTGCTAA 254
||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GAATTTCTTTCAATCTTTTGGGTTTACGAAACCCTAGATTTCGAAATTCCGGATTGCTAA 238
Query 255 CTAGCGAAAGAGAATGGCTGATCAAGGAACGGAAGGGAGCCAGCCAGTTGACCTTACTAA 314
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 239 CTAGCGAAAGAGAATGGCTGATCAAGGAATGGAAGGGAGCCAGCCAGTTGACCTTACTAA 298
Query 315 ACATCCTTCAGGGATTGTTCCTACTCTTCAAAATATTGTCTCAACAGTGAACTTAGACTG 374
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 299 GCATCCTTCAGGGATTGTTCCAACTCTTCAAAATATTGTCTCAACAGTGAACTTAGACTG 358
Query 375 CAAGCTTGATCTTAAAGCCATAGCTTTGCAAGCTAGGAATGCTGAATATAACCCCAAGCG 434
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 359 CAAGCTTGATCTTAAAGCCATAGCTTTGCAGGCTCGGAATGCTGAATATAACCCCAAGCG 418
Query 435 TTTCGCTGCTGTAATCATGAGGATCAGAGAGCCAAAGACCACAGCGTTAATTTTTGCTTC 494
||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 419 TTTCGCTGCTGTAATCATGAGGATCAGAGAGCCAAAGACAACAGCTTTAATTTTTGCTTC 478
Query 495 TGGGAAAATGGTGTGTACCGGAGCTAAAAGTGAACATCTTTCAAAGCTTGCTGCAAGAAA 554
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 479 TGGGAAAATGGTGTGTACTGGAGCTAAAAGTGAACATCTTTCAAAACTTGCTGCAAGAAA 538
Query 555 GTATGCTCGGATTGTTCAAAAGCTTGGCTTTCCTGCAAAGTTCAAGGATTTTAAGATACA 614
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 539 GTATGCTCGGATTGTTCAAAAGCTTGGCTTTCCTGCAAAGTTCAAGGATTTCAAGATTCA 598
Query 615 GAACATTGTAGGCTCATGTGATGTCAAATTCCCCATTAGGCTTGAAGGTCTTGCATACTC 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 GAACATTGTAGGCTCATGTGATGTCAAATTCCCCATTAGGCTTGAAGGTCTTGCATACTC 658
Query 675 TCATAGTGCTTTCTCAAGTTACGAGCCTGAGCTATTTCCAGGATTGATATATAGGATGAA 734
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 659 TCATAGTGCTTTCTCAAGTTACGAGCCTGAGCTATTTCCAGGATTGATATATAGAATGAA 718
Query 735 ACTTCCAAAGATTGTACTGCTTATTTTTGTGTCAGGAAAGATTGTTATAACTGGAGCCAA 794
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 ACTGCCAAAGATTGTACTGCTTATTTTTGTGTCAGGAAAGATTGTTATAACTGGAGCCAA 778
Query 795 GATGAGAGAAGAGACTTATACCGCATTTGAGAATATCTACCCAGTTCTTAGAGAATTCAG 854
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 779 GATGAGAGAAGAGACTTATACCGCATTTGAGAATATCTACCCAGTTCTTACAGAATTCAG 838
Query 855 GAAGGTCCAGCAATAATAGTAT-AG--CCTACCATATTGAAGGCAAAAACCATGTTCACG 911
|||||||||||||||||||||| || ||||| | |||||| ||||||||||||||||||
Sbjct 839 GAAGGTCCAGCAATAATAGTATCAGAGCCTACAAAATTGAAAGCAAAAACCATGTTCACG 898
Query 912 TTTGGATTGCCATGAACTAGAGATCTCGGGTGTTGGCAGGCGCTTGGTGGGGTTAT-ATT 970
|||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||
Sbjct 899 TTTGGATTGCCATGAACTAGAGATCTCGGGTGGTGGCAGGCGCTTGGTGAGGTTATTAT- 957
Query 971 CCTTGGACAAGAACTTGAAATGATTCAGATTCAAAACCAGAAATTGTAAATAGAGAATGG 1030
|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 958 CCTTGGACAAGAACTTGAGATGATTCAGATTCAAAACCAGAAATTGTAAATACAGAATGG 1017
Query 1031 AGATGCCAATAAATCTCTTTTCTTTTT--------GTTCTAAAAATGTCTTCCAAGTAAT 1082
||||||||| ||||||||||||||||| ||||||||||||||| ||||||| |
Sbjct 1018 AGATGCCAAGAAATCTCTTTTCTTTTTTTTTTTTTGTTCTAAAAATGTCTACCAAGTA-T 1076
Query 1083 CTTGTTTCATGTTCTGTTTGTTTCAGTGAACAATACCCAATCATTAAAGAGTTACTTAGT 1142
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 1077 CTTGTTTCCTGTTCTGTTTGTTTCAGTGAGCAATACCCAATCATTAAAGAGTTACCTAGT 1136
Query 1143 TCTTTGCTAACTGTTCTGTAATAAGACACCAAGTCTGTTTGCCCTTTAATATACTCTTTC 1202
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1137 TCTTTGCTAATTGTTCTGTAATAAGACACCAAGTCTGTTTTCCCTTTAATATACTCTTTC 1196
Query 1203 AA 1204
||
Sbjct 1197 AA 1198
> Ahg478727 jgi|Araly1|478727|fgenesh2_kg.3__1428__AT3G13445.1
Length=1217
Score = 608 bits (329), Expect = 3e-173
Identities = 663/818 (81%), Gaps = 47/818 (6%)
Strand=Plus/Plus
Query 73 ACTCTCTCCTTTATATATAATC-CCAATTTACAAATCTCTTTCCCTCTCTAAAAATTTCT 131
||||||||| | ||||||| | || ||||| |||||| |||||||||| | ||||
Sbjct 72 ACTCTCTCC-CT-TATATAAGCACCGATTTATAAATCTTTTTCCCTCTC---CGA-TTCT 125
Query 132 -TA-TCTTTGTATAAAAAGCCTTCTCCTTTT-TCAAATCATTCACCTTCCTTTCGCC--- 185
| ||||||||||||||| ||||||||||| |||| || ||| ||||||||||||
Sbjct 126 CAATTCTTTGTATAAAAAG-CTTCTCCTTTTCTCAATTC-TTCGGCTTCCTTTCGCCAAA 183
Query 186 TT-TTCGGGGGAATTTCTT-CC-AATC-TGTT-GGGTTTACGAAACCCTAGATTTCGAAA 240
|| ||| | ||| |||| || |||| | || | ||||||||||||||||||| |
Sbjct 184 TTCTTCCCGCGAA--TCTTCCCTAATCGTCTTAAAG-CTACGAAACCCTAGATTTCGGAT 240
Query 241 TTCCGGATTGCTAACTAGCGAAAG-AGAATGGCTGATCAAGGAACGGAAGGGAGCCA-GC 298
|||| | ||| | | | |||| | |||||||||||||||| ||||||||| | |
Sbjct 241 TTCC---TCGCT-A-T--CCAAAGAATAATGGCTGATCAAGGATTGGAAGGGAG-TACTC 292
Query 299 CAGTTGACCTTA-CTAAACATCCTTCAGGGATTGTTCCTACTCTTCAAAATATTGTCTCA 357
|||| ||||||| | || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 293 CAGTGGACCTTAGC-AAGCATCCTTCAGGGATTGTTCCTACTCTTCAAAACATTGTCTCC 351
Query 358 ACAGTGAACTTAGACTGCAAGCTTGATCTTAAAGCCATAGCTTTGCAAGCTAGGAATGCT 417
|| |||||| ||||||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct 352 ACGGTGAACCTAGACTGCAAGCTAGATCTTAAAGCCATAGCTTTGCAGGCTCGGAATGCT 411
Query 418 GAATATAACCCCAAGCGTTTCGCTGCTGTAATCATGAGGATCAGAGAGCCAAAGACCACA 477
|||||||| ||||||||||| |||||||| || |||||||||||||| || ||||| |||
Sbjct 412 GAATATAATCCCAAGCGTTTTGCTGCTGTTATTATGAGGATCAGAGAACCGAAGACTACA 471
Query 478 GCGTTAATTTTTGCTTCTGGGAAAATGGTGTGTACCGGAGCTAAAAGTGAACATCTTT-C 536
|| || || || || || ||||||||||| ||||| ||||| || ||||| | |||| |
Sbjct 472 GCATTGATATTCGCCTCAGGGAAAATGGTCTGTACTGGAGCGAAGAGTGAGTA-CTTTTC 530
Query 537 AAAGCTTGCTGCAAGAAAGTATGCTCGGATTGTTCA-AAAGCTTGGCTTTC-CTGCAAAG 594
||| | ||||| ||||||||||| ||||||| || ||| |||| ||| |||||||
Sbjct 531 GAAGATGGCTGCCCGAAAGTATGCTAGGATTGTGCAGAAA--TTGGGATTCTCTGCAAAA 588
Query 595 TTCAAGGATTTTAAGATACAGAACATTGTAGGCTCATGTGATGTCAAATTCCCCATTAGG 654
||||||||||| ||||| ||||| || ||||| || ||||||||||||||||| || ||
Sbjct 589 TTCAAGGATTTCAAGATTCAGAATATCGTAGGTTCTTGTGATGTCAAATTCCCTATAAGA 648
Query 655 CTTGAAGGTCTTGCATACTCTCATAG-TGCTTTCTCAAGTTACGAGCCTGAGCTATTTCC 713
|||||||||||||| |||||||| | ||||||||||||||| ||||| ||||| || ||
Sbjct 649 CTTGAAGGTCTTGCTTACTCTCAC-GCTGCTTTCTCAAGTTATGAGCCCGAGCTCTTCCC 707
Query 714 AGGATTGATATATAGGATGAAACTTCC-AAAGATTGTACTGCTTATTTTTGTGTCAGGAA 772
||| |||| |||||||||||| | || ||| || || || || || ||||| || || |
Sbjct 708 AGGGCTGATTTATAGGATGAAAGTGCCTAAA-ATCGTCCTTCTAATCTTTGTCTCTGGGA 766
Query 773 AGATTGTTATAACTGGAGCCAAGATGAGAGAAGAGACTTATACCGCATTTGAGAATATCT 832
|||| |||||||| ||||||||||||||||| ||||| || | || ||||||||||| |
Sbjct 767 AGATCGTTATAACAGGAGCCAAGATGAGAGAGGAGACCTACAGAGCCTTTGAGAATATAT 826
Query 833 ACCCAGTTCTTA-GAGAATTCAGGAAGGTCCAGCAATA 869
|||| || || | | |||||||| ||| | ||||||||
Sbjct 827 ACCCCGTGCTCACG-GAATTCAGAAAGATACAGCAATA 863
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45023164977
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5