BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55530.1
Length=1650
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337633 jgi|Araly1|337633|fgenesh1_pg.C_scaffold_1004198 1520 0.0
Ahg495725 jgi|Araly1|495725|fgenesh2_kg.8__1541__AT5G56340.1 111 1e-23
Ahg359584 jgi|Araly1|359584|fgenesh1_pg.C_scaffold_419000001 111 1e-23
> Ahg337633 jgi|Araly1|337633|fgenesh1_pg.C_scaffold_1004198
Length=1041
Score = 1520 bits (823), Expect = 0.0
Identities = 985/1060 (93%), Gaps = 23/1060 (2%)
Strand=Plus/Plus
Query 305 ATGGAAGAAGCAGTTGTAACGAGGTATTGGTGTCATATGTGTTCTCAAACTGTGAATCCA 364
|||||||||||| ||| |||||||||||||||||| ||||| |||||||||||| |||||
Sbjct 1 ATGGAAGAAGCAATTGCAACGAGGTATTGGTGTCACATGTGCTCTCAAACTGTGGATCCA 60
Query 365 GTCATGGAAGCTGAGATCAAATGTCCCTTTTGTCAAAGTGGGTTTGTTGAAGAAATGGAA 424
||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
Sbjct 61 GTCATGGAAGCTGAGATCAAATGCCCCTTTTGTCAAAGTGGGTTTGTTGAAGAGATGG-A 119
Query 425 GATGACGACGATCATGATTCTTCTGATCCGGCTGATGTTAGAGCAAACAACTCTCTTTGG 484
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 120 -A-GACGACGATCATGATTCTTCTGATCCGGCTGATGTTAGAGCTAACAACTCTCTTTGG 177
Query 485 GCGCCTATCTTGATGGAACTTATGAATGATCCTGTGCGTCGTAGGAGAAACCAGAGTGTT 544
|| |||||||||||||||||||||| |||||||||||| |||||||||||||||||||||
Sbjct 178 GCTCCTATCTTGATGGAACTTATGACTGATCCTGTGCGCCGTAGGAGAAACCAGAGTGTT 237
Query 545 GAGTCTGTTGAAGATAATCAAAACGAGGTACAGACCGAGAACAATG--AA-GACGATGGA 601
|||||||||||||||||||||||||||| ||||||||||| |||| || ||| || |
Sbjct 238 GAGTCTGTTGAAGATAATCAAAACGAGGCACAGACCGAGAGTAATGAAAACAACGGTGAA 297
Query 602 GAAAATGATTTGGATTGGCAGCTTCAAGAGATTCTCAGGAGAAGGAGAAGACATTCCGCT 661
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 298 GAAAATGATTTGGATTGGCAGCTTCAAGAGATTCTCAGGAGAAGGAGAAGACATTCTGCT 357
Query 662 GCTGTTTTGCAGTTGCTTCAGGGGATACGAGCAGGGTTGTCTGTAGAATCTGAGAGTACT 721
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 358 GCTGTTTTGCAATTGCTTCAGGGGATACGAGCTGGCTTGTCTGTAGAATCTGAGAGTACT 417
Query 722 GGTAATGGAGGTAATAATCCGGGACGGGTGATCTTGATCAATACCTCCAATCAGACTATC 781
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 GGTAATGGAGATAATAATCCGGGACGGGTGATCTTGATCAATACCTCCAATCAGACTATC 477
Query 782 ACGGTTCAAAACTCTGCTGATATGGATTCTGTACCTGCTGGTTCTTTAGGTGACTATTTC 841
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ACGGTTCAAAGCTCTGCTGATATGGATTCTGTACCTGCTGGTTCTTTAGGTGACTATTTC 537
Query 842 ATTGGTCCTGGATTTGAAATGTTGCTTCAACGTCTAGCTGAGAATGATCCCAACAGATAT 901
||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 538 ATTGGGCCTGGATTTGAAATGTTGCTTCAGCGTCTAGCTGAGAATGATCCCAACAGATAT 597
Query 902 GGAACACCTCCTGCTAAAAAAGAAGCTGTCGAGGCTTTGGCTACTGTGAAAATCGAAGAG 961
|| |||||||| ||||||||||||||||| |||||||||| |||||||||||| ||||||
Sbjct 598 GGGACACCTCCAGCTAAAAAAGAAGCTGTTGAGGCTTTGGGTACTGTGAAAATTGAAGAG 657
Query 962 ACTCTGCAATGTTCGGTTTGTTTAGATGATTTTGAGATTGGAACTGAGGCAAAGCTGATG 1021
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct 658 ACTCTGCAGTGTTCGGTTTGCTTAGATGATTTTGAGATTGGAACTGAGGCAAAGCGGATG 717
Query 1022 CCCTGT-ACGCACAAGTTTCATAGTGACTGCTTGTTACCATGGCTTGAGCTTCACAGTTC 1080
|||||| | ||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 718 CCCTGTGA-GCACAAGTTTCATGGTGACTGCCTGTTACCATGGCTTGAGCTTCACAGTTC 776
Query 1081 ATGCCCGGTTTGCAGATATCAGTTACCTGCAGATGAAGCCAAGACTGATTCAGTAACAAC 1140
|||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 777 ATGCCCTGTTTGCAGATATCAGTTACCTGCAGATGAACCCAAGACTGACTCAGTAACAAC 836
Query 1141 AACGAGCGATAACAATGGAAGCAGTAGTGCTTCTGCTACAACCAGCCATGGAGCTGAGAA 1200
||| || |||||||||||| ||||| ||||| ||||||||| ||||||||||||||||||
Sbjct 837 AACAAGTGATAACAATGGAGGCAGTGGTGCTCCTGCTACAAGCAGCCATGGAGCTGAGAA 896
Query 1201 CAGCGATGGAAACCGGCGCCaagaagaagaagaagaagaagaagaggaggaggaggagga 1260
|||| | || | | | | ||| || ||||||||||| | ||||| | |||||||||
Sbjct 897 CAGC-A-GG---C-G-C-C-AAG--GA-GAAGAAGAAGA-G--GAGGACGCGGAGGAGGA 941
Query 1261 gaacgagaaCAATGACGGAAGCGGATTCTCGATCCCGTGGCCGTTTAGCACCTTGTTCTC 1320
||||||| ||||||| |||||||||||||||||||| |||||||||||||| |||||| |
Sbjct 942 GAACGAGGACAATGATGGAAGCGGATTCTCGATCCCATGGCCGTTTAGCACTTTGTTCAC 1001
Query 1321 CTCGTCGCAAGATAGCAATGCACCAACGGATTCTAGTTAA 1360
|||||| |||||||||||||||||||||||||||||||||
Sbjct 1002 CTCGTCCCAAGATAGCAATGCACCAACGGATTCTAGTTAA 1041
> Ahg495725 jgi|Araly1|495725|fgenesh2_kg.8__1541__AT5G56340.1
Length=1571
Score = 111 bits (60), Expect = 1e-23
Identities = 85/97 (88%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 326 AGGTATTGGTGTCATATGTGTTCTCAAACT-GTGAATCCAGTCATGGAAGCTGAGATCAA 384
|||||||||||||| |||||||| |||| | ||||||||| | |||||| ||||||||||
Sbjct 246 AGGTATTGGTGTCACATGTGTTCACAAA-TGGTGAATCCAATAATGGAATCTGAGATCAA 304
Query 385 ATGTCCCTTTTGTCAAAGTGGGTTTGTTGAAGAAATG 421
|||||||||||||||||| || || | |||||||||
Sbjct 305 ATGTCCCTTTTGTCAAAGCGGATTCATCGAAGAAATG 341
> Ahg359584 jgi|Araly1|359584|fgenesh1_pg.C_scaffold_419000001
Length=649
Score = 111 bits (60), Expect = 1e-23
Identities = 85/97 (88%), Gaps = 2/97 (2%)
Strand=Plus/Plus
Query 326 AGGTATTGGTGTCATATGTGTTCTCAAACT-GTGAATCCAGTCATGGAAGCTGAGATCAA 384
|||||||||||||| |||||||| |||| | ||||||||| | |||||| ||||||||||
Sbjct 10 AGGTATTGGTGTCACATGTGTTCACAAA-TGGTGAATCCAATAATGGAATCTGAGATCAA 68
Query 385 ATGTCCCTTTTGTCAAAGTGGGTTTGTTGAAGAAATG 421
|||||||||||||||||| || || | |||||||||
Sbjct 69 ATGTCCCTTTTGTCAAAGCGGATTCATCGAAGAAATG 105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61858557880
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5