BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55535.1
Length=1413
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474613 jgi|Araly1|474613|fgenesh2_kg.1__4567__AT1G55535.2 1784 0.0
> Ahg474613 jgi|Araly1|474613|fgenesh2_kg.1__4567__AT1G55535.2
Length=1272
Score = 1784 bits (966), Expect = 0.0
Identities = 1195/1299 (92%), Gaps = 42/1299 (3%)
Strand=Plus/Plus
Query 1 CGATGTGATCCCGCCAAACAAACTCTTACTCTTCCCCTCCTCACGAAATTCTCCACCGTC 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 1 CGATGTGATCCCGCCAAACAAACTCTTACTCTTCCCCTCCTCACGAAATTCT---CC--C 55
Query 61 GAATAATTCTTCGTCGTTCTCTTACTCTTCTCCCTCCGTTGATCTGTGATGTGTCGCCGG 120
| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 56 --------C--CGTCGTTCTCTTCCTCTTCTCCCTCCGTTGATCTGTGATGTGTCGCCGG 105
Query 121 AAAATTTAGACATTAGAAGAAGCTTCGTGAATCATTTGTCTTTTATGAAGGGACATCGGA 180
|||||| |||| ||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct 106 TAAATTTCGACAATAGAAGAAGCTTCGTGACTAATTTGTCTTTTATGAAGGGACATCGGA 165
Query 181 GCTGCCACGAGATTTATGATGCTTTGTGGTTCTTTACGAGATCGAATTCATCCTTGGCTT 240
| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 166 GTTGCCACCAGATTTATGATGCTTTGTGGTTCTTTACGAGATCGAATTCAGCCTTGGCTT 225
Query 241 CGCGATTATGTTAAACTCCAATCTCTCGCCGTCTTCCTTATTTATGCTCAGATTGGGTGC 300
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 226 CGCGATTATGTTAGGCTCCAATCTCTCGCCGTCTTCCTTATTTACGCTCAGATTGGGTGC 285
Query 301 GCGCTAATCGGATCACTAGGAGCATTATACAATGGAGTTTTGTTGATAAATTTGGCGATT 360
|| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 GCATTAATCGGATCATTAGGAGCATTATACAATGGAGTTTTGTTGATAAATTTGGCGATT 345
Query 361 GCTTTGTTCGCGCTTGTTGCTATCGAGAGTAATAGCCAAAGTCTCGGCCGCACCTATGCG 420
|| ||||||||||||||||| |||||||| |||||||||||||||||||||||||| |||
Sbjct 346 GCGTTGTTCGCGCTTGTTGCAATCGAGAGCAATAGCCAAAGTCTCGGCCGCACCTACGCG 405
Query 421 GTTCTTCTTTTCTGCGCTCTTCTTCTTGATATCTCATGGTTCATACTTTTCACCGAAGAG 480
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 406 GTTCTTCTCTTCTGCGCTCTGCTTCTTGATATCTCATGGTTCATACTTTTCACCCAAGAG 465
Query 481 ATTTGGAGCATTTCAGCTGAGACGTATGGAACGTTTTTCATATTTTCAGTGAAACTTACA 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 466 ATTTGGAGCATTTCAGCTGAGACGTATGGAACGTTTTTCATATTTTCAGTGAAACTCACA 525
Query 541 ATGGCGATGGAAATGATTGGTTTCTTTGTGAGGCTATCATCCTCGCTTTTATGGTTTCAG 600
||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 526 ATGGCGATGGAGATGATTGGGTTCTTTGTGAGGCTATCATCCTCGCTCTTATGGTTTCAG 585
Query 601 ATTTATAGGCTGGGGGCTGCTATCGTGGACACTTCACTTCCTCGTGAAACAGATTCGGAT 660
|||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 586 ATTTATAGACTGGGGGCTTCTATCGTGGACACTTCACTTCCTCGTGAAACTGATTCGGAT 645
Query 661 TTACGAAATAGCTTCTTGAATCCACCAACTCCTGCTATAGCTAGACAATGTTCAGGTGCT 720
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 646 TTACGAAGTAGCTTCTTGAATCCACCAACTCCTGCTATAGCTAGACAATGTTCAGGTTCT 705
Query 721 GAAGAAATCTTGGGAGGTTCTATCTACGACCCTGCCTACTACACCTCTCTATTTGAAGAA 780
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 706 GAAGAAATCTTGGGAGGTTCCATCTACGACCCAGCCTACTACACCTCTCTATTTGAAGAA 765
Query 781 AGCCAAACCAATATAAATTCACCCAAAGCTACTCAGGTAAATCATTATTCAGCTGGGAAC 840
||||||||||||||||| ||||| | | | ||| |||||||||||||||||||||
Sbjct 766 AGCCAAACCAATATAAACTCACC-A---C-A----GGTGAATCATTATTCAGCTGGGAAC 816
Query 841 AATGGATCACCATCTGCTGCAGA-GGCCTCTCATATTAAGTCTCCCATATTCAGATCCTT 899
||||||||||||||||||||||| ||| ||||||| ||||| |||||||| |||||| ||
Sbjct 817 AATGGATCACCATCTGCTGCAGAAGGC-TCTCATACTAAGTATCCCATATCCAGATCATT 875
Query 900 GCATTCAATTGATGAAGAGAAGGGTTTGAAGAAACCGGA-AGAA---ATGTGTTTGAAGC 955
|||||||||||||||||||||||| |||||| |||||| || || || |||||||
Sbjct 876 GCATTCAATTGATGAAGAGAAGGGCTTGAAGCAACCGGTTAGTTTCCAT-TGATTGAAGC 934
Query 956 AAACGGGGATGGCTTCAATATGATTCAAGAAGGGTAGTGTGACCATTTGTGCATCTAAGC 1015
||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||| |
Sbjct 935 AAACGGGGATGGCTTCAATATGATTCAAGAATGGTAGTGTGACCATTTGGGTATCTAAAC 994
Query 1016 AAACGAGTTGTCTGTTGAGGTTTAGTTATCGGATTTTGAAGCCGATAAAAATGCTATTCA 1075
|||||||||||||||||||||||||||||||||||||||||| |||||||||| || |||
Sbjct 995 AAACGAGTTGTCTGTTGAGGTTTAGTTATCGGATTTTGAAGCTGATAAAAATGTTAGTCA 1054
Query 1076 TCAGTGTTCCATAAGCGAGGGAGAATTATGAAGAGTCGTCGTGTCCATACAAAGCAGAGC 1135
||||| ||||||||||||||||||| ||||||||||||| |||| |||||||| |||||
Sbjct 1055 TCAGTTTTCCATAAGCGAGGGAGAAATATGAAGAGTCGTGGTGTTTATACAAAGTAGAGC 1114
Query 1136 AAGAAGATTACATAACACCTACAAAAACATGAGATTCT---ATATGTTGAGGACAAGTAA 1192
|||||||||||||||||||||| |||| |||||||||| |||||||||||||||||||
Sbjct 1115 AAGAAGATTACATAACACCTACCAAAAGATGAGATTCTTCTATATGTTGAGGACAAGTAA 1174
Query 1193 GCACTGTTTCTACTTTGCTATTTCATTATTTGTTTTGTCTGAAAATATGTTATTTTTGGG 1252
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1175 GCACTGTTTCTACTTTGCT-TTTCATTATTTATTTTGTCTGAAAATATGTTATTTTTGGG 1233
Query 1253 GATATAT-------GGTTTAGAATAGAGTCGGAATCTAC 1284
||||||| |||||||| ||||||||||||||||
Sbjct 1234 GATATATCATATATGGTTTAGATTAGAGTCGGAATCTAC 1272
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52831169815
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5