BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55550.1
Length=2797
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474616 jgi|Araly1|474616|fgenesh2_kg.1__4570__AT1G55550.1 3709 0.0
> Ahg474616 jgi|Araly1|474616|fgenesh2_kg.1__4570__AT1G55550.1
Length=2681
Score = 3709 bits (2008), Expect = 0.0
Identities = 2440/2644 (92%), Gaps = 48/2644 (2%)
Strand=Plus/Plus
Query 1 ATGGAGAGAACAAGATCGAAACCGGTTCGGAATCTACCCGAGACAATCCATTCTTTGCTC 60
||||||||||||||||| |||||| ||||| || ||||||||||||||||||| ||||||
Sbjct 1 ATGGAGAGAACAAGATCAAAACCGATTCGGGATTTACCCGAGACAATCCATTCGTTGCTC 60
Query 61 GGTTTGAAATCTCATATGACTTCTGATTGGGTTAAATCTGTATGCAACATCGCCAAGAAT 120
||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct 61 GGTTTGAAATCTCATATGACTTCTGATTGGGTTAAATCTGTGTGCAACATCGTCAAGAAC 120
Query 121 ACTTCTTCAACGTCAAAGAAAGAAGAAGACGACTTTGTTTCTGTCGATTTACAGAGCATT 180
| |||||||||||||||| |||||||||| |||| ||||||| ||||||||||||||||
Sbjct 121 AATTCTTCAACGTCAAAGGAAGAAGAAGATGACTCTGTTTCTACCGATTTACAGAGCATT 180
Query 181 AGAGATCAGCTCTCTGCACTAACTGTTCAAGTCAACGATCAGAACAAACTGAGAAGACAA 240
|||||| | |||||||||||||| ||||||||||| ||||||||||||| |||||||||
Sbjct 181 AGAGATAAACTCTCTGCACTAACAGTTCAAGTCAATGATCAGAACAAACAGAGAAGACAG 240
Query 241 ATTCTTAATGAGTTCTTGGACCTTAAAGGGAACATTCGTGTGTTTTGTCGAGTCAAACCC 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 241 ATTCTTAATGAGTTCTTGGACCTTAAAGGGAACATGCGTGTGTTTTGTCGAGTCAAACCC 300
Query 301 TTGGGAGCCACCGAAAAGTTGAGACCACCGGTTGCTTCGGATACAAGAAATGTGATCATC 360
|| |||||| ||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 301 TTAGGAGCCTCCGAAAAGTTGAGGCCACCGGTTGCTTCGGATTCAAGAAATGTGATCATC 360
Query 361 AAGTTATCAGAAACCAAGAGAAAAACCTACAACTTCGACAGAGTTTTCCAACCTGATTCA 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 AAGTTGTCAGAAACCAAGAGAAAAACCTACAACTTCGACAGAGTTTTCCAACCTGATTCA 420
Query 421 TCCCAAGATGATGTTTTCTTAGAGATCGAACCAGTAATCAAGTCAGTTATCGATGGCTAC 480
||||||||||||||| |||||||||| |||||||||||||| || |||||||||||||||
Sbjct 421 TCCCAAGATGATGTTATCTTAGAGATTGAACCAGTAATCAAATCGGTTATCGATGGCTAC 480
Query 481 AACGCTTGCATTTTCGCATACGGGCAAACCGGTACTGGAAAAACTTATACAATGGAGGGT 540
|||||||| |||||||| || || |||||||||||||| |||||||||||||||||||||
Sbjct 481 AACGCTTGTATTTTCGCGTATGGACAAACCGGTACTGGGAAAACTTATACAATGGAGGGT 540
Query 541 CTTCCGAACTCTCCAGGTATCGTTCCTCGAGCGATCAAGGGATTGTTCAAACAAGTCGAG 600
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 541 CTTCCGAACTCTCCAGGTATCGTTCCTCGAGCGATCAAGGGATTGTTTAAACAAGTCGAG 600
Query 601 GAAAGTAATCATATGTTTACAATCCACTTTAGTATGCTTGAGATTTACATGGGAAATCTT 660
||||| ||||||| |||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 601 GAAAGCAATCATAAGTTTTTAATCCACTTCAGTATGCTTGAGATTTACATGGGAAATCTT 660
Query 661 AAAGACTTGCTTCTTTCTGAAGCAACTAAACCCATTTCTCCAATACCTCCAAGTCTTTCT 720
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 661 AAAGACTTGCTTCTTTCTCAAGCAACTAAACCCATTTCTCCAATACCTCCAAGTCTTTCG 720
Query 721 ATTCACACAGACCCAAATGGAGAGATAGATATTGAGAACTTGGTGAAACTTAAAGTGGAT 780
|||||| | ||| ||| |||||||||||| || || ||||| ||||| |||||||| |||
Sbjct 721 ATTCACGCTGACGCAAGTGGAGAGATAGAGATCGATAACTTAGTGAATCTTAAAGTAGAT 780
Query 781 GACTTTAATGAAATCTT-AAGGTTATACAAAGTAGGTTGTCGTAGCAGAGCAACTGCCTC 839
||||||||| || |||| || ||||||||||| ||| ||||| | |||||||||||||||
Sbjct 781 GACTTTAATCAAGTCTTCAA-GTTATACAAAGAAGGATGTCGAAACAGAGCAACTGCCTC 839
Query 840 CACTAACTCTAACTCTGTTTCCAGCAGATCACACTGTATGATCCGTGTATCGGTCACTAG 899
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 840 CACTAACTCTAACTCTGCTTCCAGCAGATCACACTGTATGATCCGTGTATCGGTCACTTG 899
Query 900 TCTTGGAGCTCCTGAGAGACGGCGTGAAACAAACAAGATTTGGCTAGTGGATCTTGGAGG 959
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 900 TCTTGGAGCTTCTGAGAGACGGCGTGAAACAAACAAGATTTGGCTAGTGGATCTTGGAGG 959
Query 960 AAGCGAGCGCGTGTTGAAAACAAGAGCCACTGGTCGGCGTTTTGATGAAGGCAAAGCCAT 1019
||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||
Sbjct 960 AAGCGAGCGTGTGTTGAAAACCAGAGCCACTGGTCTTCGTTTTGATGAAGGCAAAGCCAT 1019
Query 1020 TAATCTCTCTTTATCTGCTCTTGGAGATGTCATCAACTCTCTTCAACGCAAGAACTCTCA 1079
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 TAATCTCTCTTTATCCGCTCTTGGAGATGTCATCAACTCTCTTCAACGCAAGAACTCTCA 1079
Query 1080 CATTCCTTACAGGAACAGCAAGCTCACACAGGTTCTAAAAGACTCTCTCGGGCAAGACTC 1139
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 1080 CATTCCTTACAGGAACAGCAAGCTCACACAGGTTCTGAAAGACTCTCTCGGACAAGATTC 1139
Query 1140 AAAAACGTTGATGCTTGTTCATATCAGCCCTAAAGAGGATGATCTATGTGAAACCATATG 1199
|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1140 AAAAACGTTGATGCTTGTTCATATCAGCCCTAAAGAAGAAGATCTATGTGAAACCATATG 1199
Query 1200 TTCTTTAAACTTTGCAACGAGGGCAAAGAATATTCATTTAGGGCAGGACGAATCAACGGA 1259
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1200 TTCTTTAAACTTTGCAACGAGGGCAAAGAACATTCATTTAGGGCAGGACGAATCAACGGA 1259
Query 1260 AGAACAAGC-GAAAAAGGAGGCTGTGATGATGAATCTGCAGAAGATGATGGAAAAGATTG 1318
||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1260 AGAACAA-CAGAAAAAGGAGGCTGTGATGATGAATCTGCAGAAGATGATGGAAAAGATCG 1318
Query 1319 AACAAGAGCGTGAGATGTCGTTAAGAAAGATGAGAAATCTAAACGAGACGTTGGAGAAAC 1378
|||||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 1319 AACAAGAGCGCGAGATGTCGTTAAGAGAGATGAGAAATCTAAACAAGACGTTGGAGAAAT 1378
Query 1379 TCACTGGTAAGCCTCATGTTATTGAAGAAGAAGAAAAGGATGTGGTTAGAGAAGTGATTC 1438
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 1379 TCACTGGTAAGCCTCATGTTATTGAAGAAGAAGAAAAGGATGTGATTAGAGAAGAGATTC 1438
Query 1439 ATGTGACTCCAAAGAAACCAAGAAACAAATCAAGACGTGCTTCAGATGTTTTTCCTAGCT 1498
| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1439 AAGTGACTCCAAAAAAACCAAAAAACAAATCAAGACGTGCTTCAGATGTTTTTCCTAGCT 1498
Query 1499 TCATGAGACCAACAGCTAGCAGCAACAGAAGATTATCAGGAGCAGATTTTAGCGTAACCC 1558
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1499 TCATGAGACCAACAGCTAGCAGCA---GAAGATTATCAGGAGCAGATTTTAGCGTAACCC 1555
Query 1559 CTAATTCTTCAAGCT-TCAAGTCTAGAAGGAACTCAATGATATCTGTCCGAGCTGAATCT 1617
||||| |||| ||| | ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1556 CTAATGCTTCGGGCTAT-AAGTCTAGAAGGAACTCGATGATATCTGTCCGAGCTGAATCT 1614
Query 1618 GCGTGTCTTCCGGTGAAGAAGAAGAAGAACAGATTTGATTCTGCATGTGACTCATCAGAC 1677
| | | ||||||||||||||||| ||||| ||||||||| |||||||||||||||
Sbjct 1615 GTGCGCCTTCCGGTGAAGAAGAA------CAGATATGATTCTGCCTGTGACTCATCAGAC 1668
Query 1678 AGGAGCGTTTCGAAATCGACTAGCATTATGCGTCAAAATACAGCAGATGATGCAACGGTG 1737
||||||||||| ||||||||| || ||||||||||||||||| |||||||||||||||||
Sbjct 1669 AGGAGCGTTTCAAAATCGACTTGCGTTATGCGTCAAAATACATCAGATGATGCAACGGTG 1728
Query 1738 TATAGTCAGGACATATCTGAATGTGACATTAAGTTGGTAGTGTCTGAACACAAGCCAAAA 1797
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1729 TATAGTCAGGACATATCTGAATGTGACATTAAGTTGGTAGTGTCTGAGCACAAGCCAAAA 1788
Query 1798 CCGCTGCAGATGGGGCCTGGTTCTGCGACAAAGTCCCGCTCCAACATCAGTAACTTCGAG 1857
| ||||||||||||||||| ||||||||||| ||||||||||| ||| |||||||||||
Sbjct 1789 GCACTGCAGATGGGGCCTGGATCTGCGACAAAATCCCGCTCCAAGATCGGTAACTTCGAG 1848
Query 1858 AAAGATGTGATGCAGAAAATAGGT-GGAACAGAGTTTTCAAGGATTAACAGTTGGCTTCG 1916
||||||| | |||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct 1849 AAAGATGCGGCGCAGAAGAT-GGACGGAACAGAGTTTTCTAGGATTAACAGTTGGCTTCG 1907
Query 1917 TTCGCAATCTGAAAACAGGAGTTACGTGCTTGACAAG-ACTCAACTTCCTGCGACTCATT 1975
|||||||||||||||||| | |||||||||||||||| | |||||||||||||||||
Sbjct 1908 TTCGCAATCTGAAAACAGAAATTACGTGCTTGACAAGGA-TCAACTTCCTGCGACTCC-- 1964
Query 1976 TCCTAGAAAACCTAAACAGATCGTTGGAGAAGTCACCAACACAGAGTTTTACAACGGAGA 2035
|| | ||| | | | ||||||||||||||| ||||||||||||||||||||||||
Sbjct 1965 -CC-A-AAA-C--AG---G-TCGTTGGAGAAGTCATCAACACAGAGTTTTACAACGGAGA 2014
Query 2036 AGATCACTGGAAATGAA--CT-GGAA-----GG----TATAGAAGAGACTAAAACAAATG 2083
|||||||||||||||| || |||| || |||||||||| |||||||| |||
Sbjct 2015 AGATCACTGGAAATGAGTTCTTGGAAAAATTGGAAGATATAGAAGAGTCTAAAACAGATG 2074
Query 2084 AGACAGTGGTTAACCCTACACTGATGCTTAAAAAACTGTTTGAGCTGCAATGTCTCTGTT 2143
| ||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 2075 AAACAGTGGTTAAACCTACACAAATGCTTAAAAAGCTGTTTGAGCTGCAATGTCTCTGTT 2134
Query 2144 CTGCTGAAGAAGAGGATCAGATTTTGTCCAGATTCCCAATTCCTGGCTATGAGGATGATG 2203
||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| ||
Sbjct 2135 CTGCTGAAGAAGAGGATCAGATTTTGTCCAGATTCCCAAATCCTGGTTATGAGGATGTTG 2194
Query 2204 ATGAGTCTCGTTATCCTCCAATTTTAGAAAACGATGGATTTAGCCAGCACATAGACAATG 2263
||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 2195 ATGAGTCTCTTTATCCTCCCGTTTTAGAAAACGATGGATTTAGCCAACACATAGACAATG 2254
Query 2264 AATGGTTTGGAGTCAATAATTACAGTGCGGATTGGGAGCGAGATTCACCAGCCACGATCC 2323
||||||||||||||||| | |||||||| |||||||||||||||||||||||||||||
Sbjct 2255 AATGGTTTGGAGTCAATCA---CAGTGCGGCTTGGGAGCGAGATTCACCAGCCACGATCC 2311
Query 2324 CGTTGTTAGAATGCGAACCGGATCTCAAACAGCTGTTACCGGAATTGGGTTTGGATCGAT 2383
||||||||||| | |||||||||||||||||||||||||||||||||| ||| |||| ||
Sbjct 2312 CGTTGTTAGAACGTGAACCGGATCTCAAACAGCTGTTACCGGAATTGGCTTTCGATC-AT 2370
Query 2384 -CACTTAAACCAAGAGGTTTGGCGGTCGCCGAGGGTGCAGCTCCACCATTGCTTAGAGCA 2442
||||||||||||||||||||||| |||| |||| || ||||||||||||||||||||||
Sbjct 2371 TCACTTAAACCAAGAGGTTTGGCGTTCGCGGAGGATGTAGCTCCACCATTGCTTAGAGCA 2430
Query 2443 CAAGAAACCTTGGGAGAAAGAGGAAAAGGTCCAACGTTCATGCAGAAACTTCAGGCTTTA 2502
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 2431 CAAGAAACCTTGGGAGAAAGAGGAAAAGCTCCAACGTTCATGCAGAAAGTTCAGGCTTTA 2490
Query 2503 TGCTTCCGTATTCTTCTGGGATTAGGGTTTATGGATGTGGGCTTTGGTAATGACTTCTTC 2562
|||||||| ||||||||||||||||||||||| |||||||||| |||||||||||| |||
Sbjct 2491 TGCTTCCGCATTCTTCTGGGATTAGGGTTTATTGATGTGGGCTATGGTAATGACTTTTTC 2550
Query 2563 AACGGGTTAACAAAGTAAAGACATTAACAGATCCAATTCGTCATCGTGATCCCCAAAAGA 2622
| || ||||| ||||||||||| ||| ||| ||||||||| | | |||||||||||||
Sbjct 2551 AGTGGATTAACCAAGTAAAGACAAGAACTGATTCAATTCGTCTTTGAGATCCCCAAAAGA 2610
Query 2623 TGCA 2626
||||
Sbjct 2611 TGCA 2614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105548068895
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5