BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55560.1
Length=1932
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474617 jgi|Araly1|474617|fgenesh2_kg.1__4571__AT1G55560.1 3094 0.0
Ahg478721 jgi|Araly1|478721|fgenesh2_kg.3__1422__AT3G13400.1 1624 0.0
> Ahg474617 jgi|Araly1|474617|fgenesh2_kg.1__4571__AT1G55560.1
Length=1929
Score = 3094 bits (1675), Expect = 0.0
Identities = 1855/1940 (96%), Gaps = 20/1940 (1%)
Strand=Plus/Plus
Query 2 CAAAGGATTCATTAAGAGCAAAAACTAGTTTTGCTTTCCttttttttttGTAGGAAAGGG 61
||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct 1 CAAAGGATTCATTAAGAGCAAAAACTAGTTTTGCTTT--AATCTTTTTTGTAGGAAAGGG 58
Query 62 TTAATTATACGTAACACAGAAACAAAAACAATTCTCTTTTTCCTCTAGAAAAAGAGATTa 121
||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
Sbjct 59 TTAATTATACGTAACACAGAAACCAAAATAATTCTCTTTTTCCTCTAGAAAAAGAG---A 115
Query 122 aaaaaaaaaTGGAGGGGAGGTTATTGACGGTGTTGGTCTGCCTCGTCTCTACGGTGGCGA 181
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 116 AAATAAAAATGGAGGGGAGGTTATTGACGGTGTTGGTCTGCCTCGTCTCTACGGTGGCTA 175
Query 182 TCGTGAACGCCGGTGATCCTTACTTCTTCCATACATGGAACGTGACTTACGGAACTGCCT 241
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 176 TCGTGAACGCCGGTGATCCTTACTTCTTCTATACATGGAACGTGACTTACGGAACCGCCT 235
Query 242 CACCTCTCGGTGTTCCTCAAAAGGTGATTCTCATCAACGGTCAATTCCCTGGTCCTAACC 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 CACCTCTCGGTGTTCCTCAAAAGGTGATTCTCATCAACGGTCAATTCCCTGGTCCTAACC 295
Query 302 TTAACTCAACCTCTAACAACAACGTCGTCATCAATGTCTTCAACCACCTAGACGAACCTT 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 TTAACTCAACCTCTAACAACAACGTCGTCATCAATGTCTTCAACCACCTAGACGAACCTT 355
Query 362 TCCTCTTGACCTGGAGTGGGATTCAGCATAGGAAGAACTGCTGGCAAGATGGTGTGGCTG 421
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 356 TCCTCTTGACCTGGAGCGGGATTCAGCACAGGAAGAACTGCTGGCAAGATGGTGTGGCTG 415
Query 422 GAACTTCATGCCCCATCCCAGCTGGACAGAACTTTACTTACCATTTCCAACCTAAGGACC 481
| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 416 GGACTTCATGCCCCATCCCAGCAGGACAGAACTTTACTTATCATTTCCAACCTAAGGACC 475
Query 482 AGATTGGTTCCTACTTCTATTACCCAACCACTTCTCTCCACCGCTTTGCTGGTGGTTTTG 541
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 476 AGATTGGTTCTTACTTCTATTACCCGACCACTTCTCTCCACCGCTTTGCTGGTGGTTTTG 535
Query 542 GTGGTCTCCGTGTCAACAGCCGTCTCCTAATTCCCGTTCCTTATGCTGATCCTGAAGATG 601
|||||||||||||||||||||| ||||| ||||| |||||||||||||||||||| ||||
Sbjct 536 GTGGTCTCCGTGTCAACAGCCGACTCCTTATTCCTGTTCCTTATGCTGATCCTGAGGATG 595
Query 602 ACTACACTGTCCTTCTCGGTGACTGGTACACAGCTGGCCACACTGCTCTCAAGAACTTCC 661
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 ACTACACTGTTCTTCTCGGTGACTGGTACACAGCTGGCCACACTGCTCTCAAGAACTTCC 655
Query 662 TTGACAGTGGACGCACCCTTGGATTGCCTAACGGTGTTTTGATCAATGGAAAGTCTGGAA 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 TTGACAGTGGACGCACCCTTGGATTGCCTAACGGTGTTTTGATCAATGGAAAGTCTGGAA 715
Query 722 AGGTTGGAGGAAAGAACGAGCCTTTGTTCACAATGAAGCCTGGAAAGACTTACAAGTACA 781
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 716 AGGTGGGAGGAAAGAACGAGCCTTTGTTCACAATGAAGCCTGGAAAGACTTACAAGTACA 775
Query 782 GGCTCTGCAATGTTGGGTTCAAGTCTACACTTAACTTCAGGATTCAGAACCACAAGATGA 841
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 776 GGCTCTGCAATGTTGGGTTCAAGTCTACACTTAACTTCAGGATCCAGAACCACAAGATGA 835
Query 842 AGCTCGTGGAGATGGAAGGATCCCATGTTATTCAGAACGACTATGACTCTCTCGATGTCC 901
|||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 836 AGCTTGTGGAGATGGAAGGATCCCATGTTCTTCAGAACGACTACGACTCTCTCGATGTCC 895
Query 902 ATGTTGGCCAGTGCTTTTCAGTTCTTGTGACTGCTAACCAAGCAGCTAAGGATTACTACA 961
|||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 896 ATGTCGGCCAGTGCTTTTCAGTTCTTGTGACTGCTGACCAGGCAGCTAAGGATTACTACA 955
Query 962 TGGTTGCATCGACTAGGTTCCTCAAGAAGGAGTTGAGCACCGTGGGTGTGATCCGGTATG 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 956 TGGTTGCATCGACTAGGTTCCTCAAGAAGGAGTTGAGCACCGTGGGTGTGATCCGGTATG 1015
Query 1022 AGGGAAGCAACGTTCAGGCTTCAACTGAGCTACCCAAGGCTCCTGTTGGATGGGCTTGGT 1081
||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||
Sbjct 1016 AGGGAAGCAACGTTCAGGCTTCAGCTGAGCTCCCCAAGGCTCCCATTGGATGGGCTTGGT 1075
Query 1082 CTTTGAACCAGTTCAGGTCTTTCAGGTGGAACCTTACCTCTAACGCTGCAAGGCCTAACC 1141
||||||||||||| |||||||||||||||||||||||| ||| ||||| ||||||||||
Sbjct 1076 CTTTGAACCAGTTTAGGTCTTTCAGGTGGAACCTTACCGCTAGTGCTGCCAGGCCTAACC 1135
Query 1142 CCCAAGGCTCATACCATTACGGAAAGATCAACATTACCCGTAGCATCAAGCTTGTCAACT 1201
| || |||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 1136 CACAGGGCTCATACCATTACGGAAAAATCAACATCACCCGTAGCATCAAGCTTGTCAACT 1195
Query 1202 CTAAAAGTGTGGTTGACGGTAAAGTCCGGTTTGGTTTCAATGGTGTATCACACGTTGACA 1261
|||| || ||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 1196 CTAAGAGCGTGGTTGACGGCAAAGTCCGGTTTGGTTTCAACGGTGTATCACATGTTGACA 1255
Query 1262 CCGAGACTCCTTTGAAGCTTGCTGAGTACTTCCAAATGTCAGAGAAGGTTTTCAAGTACA 1321
||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||
Sbjct 1256 CCGAGACTCCTTTGAAGCTAGCTGAGTACTTCCAGATGTCAGAGAAGGTGTTCAAGTACA 1315
Query 1322 ATGTGATCAAGGACGAGCCTGCAGCCAAAATCACAGCATTGACTGTACAACCTAATGTTC 1381
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1316 ATGTGATCAAGGACGAGCCTGCAGCCAAAATCACAGCATTGACTGTACAGCCTAATGTTC 1375
Query 1382 TCAACATCACTTTCCGTACCTTTGTAGAGATCATTTTCGAGAACCACGAGAAGACCATGC 1441
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1376 TCAACATCACTTTCCGTACCTTTGTAGAGATCATTTTCGAGAACCACGAGAAGAGCATGC 1435
Query 1442 AGTCATTTCATTTGGATGGCTACTCCTTCTTCGCTGTCGCTTCTGAGCCAGGGAGGTGGA 1501
||||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct 1436 AGTCATTCCATTTGGATGGTTACTCCTTCTTCGCTGTCGCGTCTGAGCCAGGAAGGTGGA 1495
Query 1502 CACCTGAAAAGAGAGAGAACTACAACTTGCTCGATGCGGTTAGCAGACACACCGTGCAAG 1561
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 CACCTGAAAAGAGAAAGAACTACAACTTGCTCGATGCGGTTAGCAGACACACCGTGCAAG 1555
Query 1562 TCTACCCCAAGTCTTGGTCAGCTATCCTTTTGACATTCGACAACGCCGGTATGTGGAACA 1621
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1556 TATACCCCAAGTCTTGGTCAGCTATCCTCTTGACATTCGACAACGCCGGTATGTGGAACA 1615
Query 1622 TCAGGTCTGAGAACTTGGAGAGGAAATACCTAGGCGAGCAATTGTATGTCAGTGTTCTAT 1681
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1616 TCAGGTCTGAGAACTTGGAGAGGAGATACCTAGGCGAGCAATTGTATGTCAGTGTTCTAT 1675
Query 1682 CACCGGAGAAATCGCTAAGGGACGAGTACAACATCCCCCTCAACACAAACCTCTGTGGCA 1741
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1676 CACCCGAGAAATCGCTAAGGGACGAGTACAACATCCCCCTCAACACTAACCTCTGTGGCA 1735
Query 1742 TCGTCAAGGGCTTGCCATTACCTGCACACTACTCCTAAATCAATATTCAATTAACTACTA 1801
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1736 TCGTCAAGGGCTTGCCATTACCTGCACACTACTCCTAAATCAATATTCAATTAACTACT- 1794
Query 1802 CTCTACAAAGTGGGGTGCAATATTAAA-TTAACTAATTAACCCTTTCCTAAATTTTAAGT 1860
|| ||||||||||||||| ||||||| |||||| |||||||||||||||| | ||||
Sbjct 1795 CT--ACAAAGTGGGGTGCATTATTAAAATTAACTTATTAACCCTTTCCTAACT---AAGT 1849
Query 1861 GTAATTTGTAAAC--C----CC--TTCTTTCATATACTATCATTAAACCATAATCATATA 1912
||||||||||||| | || ||||||||||||||||||||||||||||||||||||
Sbjct 1850 GTAATTTGTAAACTACAGTTCCACTTCTTTCATATACTATCATTAAACCATAATCATATA 1909
Query 1913 CCAAGTTTTGCTTTCATTAC 1932
||||||||||||||||||||
Sbjct 1910 CCAAGTTTTGCTTTCATTAC 1929
> Ahg478721 jgi|Araly1|478721|fgenesh2_kg.3__1422__AT3G13400.1
Length=1780
Score = 1624 bits (879), Expect = 0.0
Identities = 1398/1648 (85%), Gaps = 38/1648 (2%)
Strand=Plus/Plus
Query 145 TTGACGGTGTTGGTCTGCCTCGTCTCTACGGTGGCGATCGTGAACGCCGGTGATCCTTAC 204
|||||||||||||| ||||||| ||| ||||||||||| |||||||||||||| ||||||
Sbjct 49 TTGACGGTGTTGGTGTGCCTCGCCTCCACGGTGGCGATGGTGAACGCCGGTGACCCTTAC 108
Query 205 TTCTTCCATACATGGAACGTGACTTACGGAACTGCCTCACCTCTCGGTGTTCCTCAAAAG 264
|||| | | || ||||||||||| |||||||| | | | ||||| || |||||||| ||
Sbjct 109 TTCTACTACACGTGGAACGTGACCTACGGAACCGTCGCGCCTCTGGGCATTCCTCAACAG 168
Query 265 GTGATTCTCATCAACGGTCAATTCCCTGGTCCTAACCTTAACTCAACCTCTAACAACAAC 324
||||||||||||||||| || |||||||| |||||||| ||||| ||||| ||||||||
Sbjct 169 GTGATTCTCATCAACGGACAGTTCCCTGGCCCTAACCTAAACTCGACCTCCAACAACAAT 228
Query 325 GTCGTCATCAATGTCTTCAACCACCTAGACGAACCTTTCCTCTTGACCTGGAGTGGGA-T 383
||||||||||||||||||||| |||| ||||| ||||||||||||||||||||| ||| |
Sbjct 229 GTCGTCATCAATGTCTTCAACAACCTCGACGAGCCTTTCCTCTTGACCTGGAGT-GGACT 287
Query 384 TCAGCATAGGAAGAACTGCTGGCAAGATGGTGTGGCTGGAACTTCATGCCCCATCCCAGC 443
||||| |||||||||| |||||||||||||||| |||| || |||||||| ||||||||
Sbjct 288 CCAGCACAGGAAGAACTCCTGGCAAGATGGTGTGACTGGGACCTCATGCCCAATCCCAGC 347
Query 444 TGGACA-GAACTTTACTTACCATTTCCAACCTAAGGACCAGATTGGTTCCTACTTCTATT 502
|| || ||||| |||||||||||||| |||||||||||||||||| ||||||||| |
Sbjct 348 AGG-CACCAACTTCACTTACCATTTCCAGCCTAAGGACCAGATTGGTAGCTACTTCTACT 406
Query 503 ACCCAACCACTTCTCTCCACCGCTTTGCTGGTGGTTTTGGTGGTCTCCGTGTCAACAGCC 562
||||| |||| ||||||||||||| || |||||||| ||||| ||||||||||||||||
Sbjct 407 ACCCATCCACCGCTCTCCACCGCTTCGCCGGTGGTTTCGGTGGCCTCCGTGTCAACAGCC 466
Query 563 GTCTCCTAATTCCC-GTTCCTTATGCTGATCCTGAAGATGACTACACTGTCCTTC-TCGG 620
||||||| | |||| || ||||| ||||| || ||||| ||| ||| ||| || ||
Sbjct 467 GTCTCCTCA-TCCCGGTCCCTTACGCTGACCCCGAAGACGACCGCACCATCC-TCATCAA 524
Query 621 TGACTGGTACA-C-AGCTGGCCACACTGCTCTCAAGAACTTCCTTGACAGTGGACGCACC 678
|||||||||| | || ||||||| |||||||||||||||||||||||||| |||||
Sbjct 525 CGACTGGTACACCAAG--AGCCACACCGCTCTCAAGAACTTCCTTGACAGTGGTCGCACT 582
Query 679 CTTGGATTGCCTAACGGTGTTTTGATCAA-TGGAAAGTCTGG-AAAGGTTGGAGGAAAGA 736
|| |||| || |||||||| | ||||| ||||| || || ||| | || ||||| |
Sbjct 583 CTAGGATCCCCCGACGGTGTTCTCATCAACGGGAAA-TCCGGTAAA-ATCGGCGGAAACA 640
Query 737 ACGAGCCTTTGTTCACAATGAAGCCTGGAAAGACTTACAAGTACAGGCTCTGCAATGTTG 796
||| ||| | |||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 641 ACGCTCCTCTCTTCACAATGAAGCCCGGAAAGACTTACAAGTACAGGATCTGCAATGTTG 700
Query 797 GGTTCAAGTCTACACTTAACTTCAGGATTC-AGAACCACAAGATGAAGCTCGTGGAGATG 855
| ||||| || || |||||||||||||| | || ||||||||||||||| || ||||||
Sbjct 701 GATTCAAATCCACTCTTAACTTCAGGATCCAAG-GCCACAAGATGAAGCTTGTTGAGATG 759
Query 856 GAAGGATCCCATGTTATTCAGAACGACTATGACTCTCTCGATGTCCATGTTGGCCAGTGC 915
||||| ||||| ||| | ||||||||||| |||||||| |||||||||||||| ||||||
Sbjct 760 GAAGGCTCCCACGTTCTCCAGAACGACTACGACTCTCTTGATGTCCATGTTGGACAGTGC 819
Query 916 TTTTCAGTTCTTGTGACTGCTAACCAAGCAGCTAAGGATTACTACATGGTTGCATCGACT 975
|| | || || ||||| ||| |||||| || ||| | ||||||||||||||||| |||
Sbjct 820 TTCGCCGTGCTAGTGACCGCTGACCAAGTGGCCAAGAACTACTACATGGTTGCATCCACT 879
Query 976 AGGTTCCTCAAGAAGG-AGTTGAGCACCGTGGGTGTGATCCGGTATGAGGGAAGCAACGT 1034
|||||||||||||||| || ||||||| || |||||||| | || || |||||||||||
Sbjct 880 AGGTTCCTCAAGAAGGAAG-TGAGCACTGTTGGTGTGATGAGCTACGAAGGAAGCAACGT 938
Query 1035 TCAGGCTTC-AACTGAGCTACCCAAGGCTCCTGTTGGATGGGCTTGGTCTTTGAACCAGT 1093
||||||||| ||| ||| | ||||||||||| || || |||||||||||| | || ||||
Sbjct 939 TCAGGCTTCAAAC-GAGATCCCCAAGGCTCCCGTCGGCTGGGCTTGGTCTCTCAATCAGT 997
Query 1094 TCAGGTCTTTCAGGTGGAACCTT-ACCTCTAACGCTGCAAGGCCTAACCCCCAAGGCTCA 1152
|||| || ||||| ||||| ||| ||| | | || || || |||||||| ||||| ||
Sbjct 998 TCAGATCCTTCAGATGGAA-CTTAACCGCCAGTGCCGCTAGACCTAACCCTCAAGGATCT 1056
Query 1153 TACCATTACGGAAAGATCAACATTACCCGTAGCATCAAGCTTGTCAACTCTAA-AAGTGT 1211
||||||||||||||||||||||| ||||||| ||||||||| | |||| | || || | |
Sbjct 1057 TACCATTACGGAAAGATCAACATCACCCGTACCATCAAGCTCGCCAACACCAAGAA-TTT 1115
Query 1212 GGTTG-ACGGTAAA-GTCCGGTTTGGTTTCAATGGTGTATCACACGTTGACACCGAGACT 1269
|| || | || ||| ||| ||||||| ||||| ||||| |||||||||||||||||||||
Sbjct 1116 GG-TGAATGG-AAAGGTCAGGTTTGGGTTCAACGGTGTGTCACACGTTGACACCGAGACT 1173
Query 1270 CCTTTGAAGCTTGCTGAGTACTTCCAAATGTCAGAGAAGGTTTTCAAGTACAATGTGATC 1329
|| |||||||| |||||||||||| ||||| |||||||| ||||| ||||| || |||
Sbjct 1174 CCCTTGAAGCTCGCTGAGTACTTCGGTATGTCCGAGAAGGTCTTCAAATACAACGTCATC 1233
Query 1330 AAGGACGAGCCTGCAGCCAAAATCACAGCATTGACTGTAC-AACCTAATGTTCTCAACAT 1388
|||||||| || |||||||| |||||| || | || || | | || ||||| ||||||||
Sbjct 1234 AAGGACGAACCAGCAGCCAAGATCACAACACTAACAGT-CGAGCCCAATGTCCTCAACAT 1292
Query 1389 CACTTTCCGTACCTTTGTAG-AGATCATTTTCGAGAACCACGAGAAGACCATGCAGTCAT 1447
|||||||||||||||||| | || |||| ||||||||||||||||| | |||||| || |
Sbjct 1293 CACTTTCCGTACCTTTGTCGAAG-TCATCTTCGAGAACCACGAGAAAAGCATGCAATC-T 1350
Query 1448 TT-CATTTGGATGGCTACTCCTTCTTCGCTGTCGCTTCTGAGCCAGGGAGGTGGACACCT 1506
|| |||||||| || ||||||||||||||||||||||| |||||||| || ||||||||
Sbjct 1351 TTCCATTTGGACGGTTACTCCTTCTTCGCTGTCGCTTCCGAGCCAGGAAGATGGACACCA 1410
Query 1507 GAAAAGAGAGAGAACTACAACTTGCTCGATGCGGTTAGCAGACACACCGTGCAAGTCTAC 1566
|| |||||| ||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1411 GAGAAGAGAAAGAACTACAACTTGCTCGATGCGGTTAGCAGACACACCGTGCAGGTGTAC 1470
Query 1567 CCCAAGTCTTGGTCAGCTATCCTTTTGACATTCGACAACGCCGGTATGTGGAACATCAGG 1626
||||| || |||||||| || || |||||||||||||| ||||||||||||||||||||
Sbjct 1471 CCCAAATCCTGGTCAGCCATTCTCTTGACATTCGACAATGCCGGTATGTGGAACATCAGA 1530
Query 1627 TCTGAGAACTTGGAGAGGAA-ATACCTAGGCGAGCAATTGTATGTCAGTGTTCTATCACC 1685
|| ||||||| |||||| || |||| | ||| |||||||||| ||||||||||| |||||
Sbjct 1531 TCAGAGAACTGGGAGAG-AAGATACTTGGGCCAGCAATTGTACGTCAGTGTTCTGTCACC 1589
Query 1686 GGAGAAATCGCTAAGGGACGAGTACAACATCCCCCTCAACACAAACCTCTGTGGCATCGT 1745
|| ||||| ||||| ||||||||||||||||| |||||||| ||||| || ||||||||
Sbjct 1590 TGAAAAATCACTAAGAGACGAGTACAACATCCCACTCAACACTAACCTTTGCGGCATCGT 1649
Query 1746 CAAGGGCTTGCCATTACCTGCACACTAC 1773
||||||||||||||||||| ||| ||||
Sbjct 1650 CAAGGGCTTGCCATTACCTACACCCTAC 1677
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72600006970
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5