BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55570.1
Length=2088
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924070 jgi|Araly1|924070|scaffold_105351.1 2848 0.0
Ahg478720 jgi|Araly1|478720|fgenesh2_kg.3__1421__AT3G13390.1 1434 0.0
Ahg478721 jgi|Araly1|478721|fgenesh2_kg.3__1422__AT3G13400.1 826 0.0
Ahg474617 jgi|Araly1|474617|fgenesh2_kg.1__4571__AT1G55560.1 693 0.0
> Ahg924070 jgi|Araly1|924070|scaffold_105351.1
Length=1709
Score = 2848 bits (1542), Expect = 0.0
Identities = 1655/1711 (97%), Gaps = 2/1711 (0%)
Strand=Plus/Plus
Query 95 TAATAATAAAGTTTACTATTAATGAAGGGAGGGGTTAAACTTTTGGCCGTGTGCCTTTGC 154
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TAATAATAAAGTTTACTATTAATGAAGGGAGGGGTTAAACTTTTGGCCGTGTGCCTTTGT 60
Query 155 GTGGCCACGGCGACCGTCATGATGGTCCAAGCGGAGGACCCTTACTTCCACCACGTGTGG 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGGCCACGGCGACCGTCATGATGGTCCAAGCGGAGGACCCTTACTTCCACCACGTGTGG 120
Query 215 AACGTGACGTACGGAACCGCATCTCCTCTCGGCGTTCCACAACAAGTCATCCTCATCAAC 274
|| |||||||||||||||||||||||||| |||||||||||||||||||| ||||| |||
Sbjct 121 AATGTGACGTACGGAACCGCATCTCCTCTAGGCGTTCCACAACAAGTCATTCTCATTAAC 180
Query 275 GGTCAATTCCCTGGTCCTAACATCAACTCGACTTCTAACAACAACGTCATCGTTAATGTC 334
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 181 GGTCAATTCCCTGGTCCTAACATCAACTCCACTTCTAACAACAACGTCATCGTTAATGTT 240
Query 335 TTCAACAACCTCGACGAGCCTTTCCTCATCACCTGGGCCGGAATCCAGCACAGGAAGAAC 394
||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||
Sbjct 241 TTCAACAACCTCGACGAGCCTTTCCTCATTACCTGGAATGGAATCCAGCACAGAAAGAAC 300
Query 395 TGCTGGCAAGATGGAACAGCTGGAACAATGTGTCCGATCCCTCCGGGTCAGAACTTTACA 454
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 301 TGCTGGCAAGATGGAACAGCTGGAACAATGTGTCCCATCCCTCCGGGTCAGAACTTCACA 360
Query 455 TACCATTTCCAGCCAAAGGATCAAATCGGTAGCTACTTCTACTACCCGACCACAGCCATG 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 TACCATTTCCAGCCAAAGGATCAAATCGGTAGCTACTTCTACTACCCGACCACAGCCATG 420
Query 515 CATCGTGCCGCTGGTGGCTTTGGTGGCCTTCGTGTGAACAGCCGTCTATTGATCCCGGTT 574
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 421 CATCGTGCCGCTGGTGGCTTTGGTGGCCTTCGTGTGAACAGCCGTCTCTTGATCCCGGTT 480
Query 575 CCTTACGCTGACCCTGAAGATGACTACACTATCCTTATCAACGACTGGTACACCAAAAGC 634
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 481 CCGTACGCTGACCCTGAAGATGACTACACTGTCCTTATCAACGACTGGTACACCAAAAGC 540
Query 635 CATACTCAGCTCAAGAAGTTCCTCGACAGTGGTCGTACTATTGGTCGTCCTGATGGCATT 694
|| ||||||||||||||||| |||||||||||||| |||||||| ||||| |||||||||
Sbjct 541 CACACTCAGCTCAAGAAGTTTCTCGACAGTGGTCGCACTATTGGCCGTCCAGATGGCATT 600
Query 695 CTCATCAACGGTAAATCCGGGAAAACTGATGGCTCTGACAAACCTCTTTTCACTTTGAAG 754
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 601 CTCATCAACGGTAAATCCGGGAAAACTGATGGCTCTGACAAACCTCTTTTCACCTTGAAG 660
Query 755 CCAGGGAAAACATACAGAGTTCGTATCTGTAACGTGGGTCTCAAGGCATCTCTTAACTTC 814
||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 661 CCAGGAAAAACCTACAGAGTCCGTATCTGTAACGTGGGTCTCAAGGCATCTCTTAACTTC 720
Query 815 AGGATTCAGAACCACAAAATGAAGCTTGTCGAGATGGAAGGCTCACATGTTCTACAAAAC 874
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 721 AGAATTCAGAACCACAAAATGAAGCTTGTCGAGATGGAAGGTTCACACGTTCTACAAAAC 780
Query 875 GACTATGACTCGCTTGATGTCCATGTCGGTCAGTGTTTTGGTGTAATCGTCACGGCAGAC 934
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GACTATGACTCCCTTGATGTCCATGTCGGTCAGTGTTTTGGTGTAATCGTCACGGCAGAC 840
Query 935 CAAGAACCTAAAGATTACTACATGATTGCTTCCACAAGGTTCTTGAAGAAACCTCTGACA 994
||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 841 CAAGAACTTAAAGATTACTACATGGTTGCTTCCACAAGGTTCTTGAAGAAACCTTTGACA 900
Query 995 ACCACAGGATTGCTCCGCTACGAGGGAGGCAAAGGTCCTGCGTCTTCTCAGCTACCTGCG 1054
|| ||||| || ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 901 ACGACAGGGTTACTCCGCTACGAGGGAGGCAAAGGTCCTGCCTCTTCTCAGCTACCTGCC 960
Query 1055 GCCCCCGTTGGTTGGGCTTGGTCTTTGAATCAGTACCGATCTTTCAGGTGGAACTTGACA 1114
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 961 GCCCCCGTTGGTTGGGCTTGGTCTTTGAACCAGTTCCGATCTTTCAGGTGGAACTTGACA 1020
Query 1115 GCCAGCGCCGCTAGACCTAACCCACAAGGCTCGTACCACTACGGAAAAATTAATATCACT 1174
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1021 GCCAGCGCAGCTAGACCTAACCCACAAGGCTCGTACCACTACGGTAAAATTAACATCACT 1080
Query 1175 CGCACCATCAAGCTCGTGAACACTCAGGGAAAGGTCGATGGCAAGCTTAGGTACGCGTTG 1234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1081 CGCACCATCAAGCTCGTGAACACTCAGGGAAAGGTCGATGGCAAGCTTAGGTACGCGTTG 1140
Query 1235 AGCGGGGTCTCCCACACCGACCCTGAGACACCTCTCAAGCTTGCTGAGTACTTCGGCGTT 1294
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1141 AGCGGGGTCTCCCACACCGACCCTGAGACACCTCTCAAGCTCGCTGAGTACTTCGGCGTT 1200
Query 1295 GCTGATAAGGTTTTCAAGTACGACACCATCTCGGACAACCCAAATCCTGATCAGATCAAG 1354
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1201 GCTGATAAGGTTTTCAAGTACGACACCATCTCGGACAACCCAAATCCCGATCAGATCAAG 1260
Query 1355 AACATCAAGATCGAACCCAATGTTCTTAACATCACTCACCGCACCTTCATTGAAGTCGTG 1414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1261 AACATCAAGATCGAACCCAATGTTCTTAACATCACTCACCGCACCTTCATTGAAGTCGTG 1320
Query 1415 TTCGAGAACCACGAGAGGAGTGTCCAGTCTTGGCATTTGGACGGCTATTCCTTCTTCGCT 1474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TTCGAGAACCACGAGAGGAGTGTCCAGTCTTGGCATTTGGACGGCTATTCCTTCTTCGCT 1380
Query 1475 GTAGCGGTTGAGCCAGGGACATGGACACCAGAGAAGAGGAAGAACTACAACCTTCTAGAT 1534
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GTAGCGGTTGAGCCAGGGACATGGACACCAGAGAAGAGGAAGAACTACAACCTTCTAGAC 1440
Query 1535 GCAGTGAGCCGACACACAGTCCAGGTCTACCCCAAGTGTTGGGCTGCAATCTTGCTCACA 1594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 GCAGTGAGCCGACACACAGTCCAGGTCTACCCCAAGTGTTGGGCTGCAATCTTGCTCACA 1500
Query 1595 TTCGACAACTGTGGAATGTGGAACATTAGGTCGGAGAACGCAGAAAGACGCTACTTGGGA 1654
||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||
Sbjct 1501 TTCGACAACTGTGGAATGTGGAACATTAGGTCGGAGAACTCAGAGAGACGTTACTTGGGA 1560
Query 1655 CAGCAACTGTACGCAAGCGTCTTGTCACCAGAAAAATCTCTCCGGGACGAATACAACATG 1714
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1561 CAGCAACTGTACGCAAGCGTCTTGTCACCGGAAAAATCTCTCCGGGACGAATACAACATG 1620
Query 1715 CCGGAGACAAGCCTTCAATGTGGTCTTGTCAAGGGCAAGCCTAAGGTTAACCCTTATGCC 1774
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1621 CCGGAGACAAGCCTCCAATGTGGTCTCGTCAAGGGCAAGCCTAAGGTTAACCCTTATGCC 1680
Query 1775 GGAGCTTAATTTGCTTTCTTTGAAATTATTT 1805
|||||||||| | ||||||||| |||||||
Sbjct 1681 GGAGCTTAATAT--TTTCTTTGAGATTATTT 1709
> Ahg478720 jgi|Araly1|478720|fgenesh2_kg.3__1421__AT3G13390.1
Length=2117
Score = 1434 bits (776), Expect = 0.0
Identities = 1381/1676 (82%), Gaps = 30/1676 (2%)
Strand=Plus/Plus
Query 123 GAGGGGTTAAACTTTTGGCCGTGTGCCTTTGCGTGGCCAC-GGCG-ACCGTCATGATGGT 180
||||||||||||| ||||||| |||||| | | ||||| | | || | || || ||||
Sbjct 112 GAGGGGTTAAACTCTTGGCCGCGTGCCTCTACCTGGCCGCAGCCGCAACG--GTGGTGGT 169
Query 181 CCAAGCGGAGGACCCTTACTTCCACCACGTGTGGAACGTGACGTACGGAACCGCATCTCC 240
|| ||| || |||||||||||||| ||||| ||||||||||| |||||||||| |||||
Sbjct 170 CCGAGCAGAAGACCCTTACTTCCATCACGTATGGAACGTGACCTACGGAACCGTGTCTCC 229
Query 241 TCTCGGCGTTCCACAACAAGTCATCCTCATCAACGGTCAATTCCCTGGTCCTAACATCAA 300
||||||||||||||||||||||| || |||||||| |||||||||||||| ||||||||
Sbjct 230 GCTCGGCGTTCCACAACAAGTCATTCTGATCAACGGCCAATTCCCTGGTCCCAACATCAA 289
Query 301 CTCGACTTCTAACAACAACGTCATCGTTAATGTCTTCAACAACCTCGACGAGCCTTTCCT 360
||| || || ||||||||| ||||| | ||||||||||||||||||||||| ||||||||
Sbjct 290 CTCAACCTCCAACAACAACATCATCATCAATGTCTTCAACAACCTCGACGAACCTTTCCT 349
Query 361 CATCACCTGGGCCGGAATCCAGCACAGGAAGAACTGCTGGCAAGATGGAACAGCTGGAAC 420
| |||| ||| || ||||| |||||||||||||| ||||||||||| || | |||||
Sbjct 350 CCTCACATGGAATGGGATCCAACACAGGAAGAACTGTTGGCAAGATGGGACTCCAGGAAC 409
Query 421 AATGTGTCCGATCCCT-CCGGGTCA-GAACTTTACATACCATTTCCAGCCAAAGGATCAA 478
||||||||||| | || || || |||| || |||||||||||||| ||||||||
Sbjct 410 TATGTGTCCGAT-AATGCCCGG-CACCAACTACACTTACCATTTCCAGCCTAAGGATCAG 467
Query 479 ATCGGTAGCTACTTCTACTACCCGACCACAGCCATGCATCGTGCCGCTGGTGGCTTTGGT 538
||||| ||||| ||||||||||| | ||| ||| |||| ||| | |||||||| || |||
Sbjct 468 ATCGGAAGCTATTTCTACTACCCCAGCACCGCCTTGCACCGTTCTGCTGGTGGATTCGGT 527
Query 539 GGCCTTCGTGTGAACAGCCGTCTATTGATCCCGGTTCCTTACGCTGACCCTGAAGATGAC 598
|| || ||||||||||||||||| | |||||||| |||||||||||||| |||||||||
Sbjct 528 GGACTCCGTGTGAACAGCCGTCTCCTCATCCCGGTCCCTTACGCTGACCCAGAAGATGAC 587
Query 599 TACACTATCCTT-ATCAACGACTGGTACACCAAAAGCCATACTCAGCTCAAGAAGTTCCT 657
||||| | ||| ||| || |||||||| || ||||| || || | ||||| |||||
Sbjct 588 TACACCGT-CTTGATCGGTGATTGGTACACTAAGAGCCACACCCAATTGAAGAAATTCCT 646
Query 658 CGACAGTGGTCGTACTATTGGTCGTCCTGATGGCATTCTCATCAACGGTAAA-TCCGGGA 716
|| | ||||||||| |||| ||||| ||||| |||||||||||||| ||| ||||||
Sbjct 647 TGATGGCGGTCGTACTCTTGGCCGTCCAGATGGTATTCTCATCAACGG-AAAGGCCGGGA 705
Query 717 AA-ACTGATGGCTCTGACAAACCTCT-TTTCACTTTGAAG-CCAGGGAAA-ACATACAGA 772
|| | ||||| || || |||||| ||| || ||| || || ||||| || |||||
Sbjct 706 AAGGC-GATGGATCCGATGCACCTCTCTTT-ACCTTG-AGACC-TGGAAAGACCTACAGG 761
Query 773 GTTCGTATCTGTAACGTGGGTCTCAAGGCATCTCTTAACTTCAGGATTCAGAACCACAAA 832
||| | |||||||||||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 762 GTTAGGGTCTGTAACGTGGGTCTCAAGACATCTCTTAACTTTAGGATTCAGAATCACAAG 821
Query 833 ATGAAGCTTGTCGAGATGGAAGGCTCACATGTTCTACAAAACGACTATGACTCGCTTGAT 892
||||||| || ||||||||||| || || ||||| || ||||| |||||||| || ||
Sbjct 822 TTGAAGCTCGTTGAGATGGAAGGATCGCACGTTCTCCAGAACGATTATGACTCTCTCGAC 881
Query 893 GTCCATGTCGGTCAGTGTTTTGGTGTAATCGTCACGGC-AGACCAAGAACCTAAAGATTA 951
|| || ||||||||||||| || ||| | | || | | || ||| ||||||||||
Sbjct 882 GTTCACGTCGGTCAGTGTTACGGAACCATCCTTTCCGCTA-ATCAGGAAGCTAAAGATTA 940
Query 952 CTACATGATTGCTTCCACAAGGTTCTTGAAGAAACCTCTGACAACCACAGGAT-TGCTCC 1010
||||||| |||| ||| | |||||||||||| | | || || || || | | ||||
Sbjct 941 CTACATGGTTGCATCCTCTAGGTTCTTGAAGTCGGTTATTACCACTACCGG-TCTTCTCC 999
Query 1011 GCTACGAGGGAGGCAAAGGTCCTGCGTCTTCTCAGCTACCTGC-GGCCCCCGTTGGTTGG 1069
|||| |||||||| ||||| || || ||||| |||||||| | || || ||||| |||
Sbjct 1000 GCTATGAGGGAGGAAAAGGCCCCGCTTCTTCGCAGCTACCCCCTGG-TCCAGTTGGCTGG 1058
Query 1070 GCTTGGTCTTTGAATCAGTACCGATCTTTCAGGTGGAACTTGACAGCCAGCGCCGCTAGA 1129
|||||||| ||||| |||| |||||||||||| ||||||||||| ||||| || || ||
Sbjct 1059 GCTTGGTCCTTGAACCAGTTCCGATCTTTCAGATGGAACTTGACCGCCAGTGCGGCCAGG 1118
Query 1130 CCTAACCCACAAGGCTCGTACCACTACGGAAAAATTAATATCACTCGCACCATCAAGCTC 1189
|||||||| || || || |||||||||||||| || || || || ||||||||||||||
Sbjct 1119 CCTAACCCTCAGGGTTCTTACCACTACGGAAAGATCAACATTACACGCACCATCAAGCTT 1178
Query 1190 GTGAACACTCAGGGAAAGGTCGATGGCAAGCTTAGGTACGCGTTGAGCGGGGTCTCCCAC 1249
||||||||||| || |||||| |||| ||||| ||||||||||||| ||| ||||| |||
Sbjct 1179 GTGAACACTCAAGGCAAGGTCAATGGAAAGCTCAGGTACGCGTTGAACGGAGTCTCGCAC 1238
Query 1250 ACCGACCCTGAGACACC-TCTCAAGCTTGCTGAGTACTTCGGCGTTGCTGATAAGGTTTT 1308
|| |||||||| || || | | |||||||| |||||||| || ||||| || ||||||||
Sbjct 1239 ACTGACCCTGAAACCCCAT-TGAAGCTTGCCGAGTACTTTGGTGTTGCCGACAAGGTTTT 1297
Query 1309 CAAGTACGACACCATCTCGGACAACCCAAATCCTGATCAGATCAAGAACATCAAGATCGA 1368
||||||||||| |||| | || ||||||| || || || ||||||| ||||||||||||
Sbjct 1298 CAAGTACGACAGCATCACTGATAACCCAACCCCAGAACAAATCAAGAGCATCAAGATCGA 1357
Query 1369 ACCCAATGTTCTTAACATCACTCACCGCACCTTCATTGAAGTCGTGTTCGAGAACCACGA 1428
|| |||||||||||||||||||||||||||||||| || || ||||| |||||||||||
Sbjct 1358 GCCAAATGTTCTTAACATCACTCACCGCACCTTCATCGAGGTGGTGTTTGAGAACCACGA 1417
Query 1429 GAGGAGTGTCCAGTCTTGGCATTTGGACGGCTATTCCTTCTTCGCTGTAGCGGTTGAGCC 1488
|| |||||| ||||| ||||| |||||||| || |||||||| || || || || |||||
Sbjct 1418 GAAGAGTGTTCAGTCGTGGCACTTGGACGGTTACTCCTTCTTTGCCGTCGCTGTCGAGCC 1477
Query 1489 AGGGACATGGACACCAGAGAAGAGGAAGAACTACAACCTTCTAGATGCAGTGAGCCGACA 1548
|||||| ||||| ||||||||||| ||||||||||||||||| || ||||||||| ||||
Sbjct 1478 AGGGACTTGGACTCCAGAGAAGAGAAAGAACTACAACCTTCTGGACGCAGTGAGCAGACA 1537
Query 1549 CACAGTCCAGGTCTACCCCAAGTGTTGGGCTGCAATCTTGCTCACATTCGACAACTGTGG 1608
||||||||| |||||||| || |||||||| |||||||||||||||||||||||||||||
Sbjct 1538 CACAGTCCAAGTCTACCCAAAATGTTGGGCAGCAATCTTGCTCACATTCGACAACTGTGG 1597
Query 1609 AATGTGGAACATTAGGTCGGAGAACGCAGAAAGACGCTACTTGGGACAGCAACTGTACGC 1668
||||||||||||| | || || ||| | || ||||| ||||| |||||||| || |||||
Sbjct 1598 AATGTGGAACATTCGATCTGAAAACTCCGAGAGACGTTACTTAGGACAGCAGCTTTACGC 1657
Query 1669 AAGCGTCTTGTCACCAGAAAAATCTCTCCGGGACGAATACAACATGCCGGAGACAAGCCT 1728
|| |||||||||||||| ||||| || | || |||||||||||||| |||||||||||
Sbjct 1658 GAGTGTCTTGTCACCAGAGAAATCACTGAGAGATGAATACAACATGCCTGAGACAAGCCT 1717
Query 1729 TCAATGTGGTCTTGTCAAGGGCA-AGCCTAAGGTTAACCCTTATGCCGGAGCTTAA 1783
||||||||||| |||||||| | | |||||| ||| ||||| || ||||| |||
Sbjct 1718 CCAATGTGGTCTAGTCAAGGGTACA-CCTAAGCCTAATCCTTACGCTGGAGCCTAA 1772
> Ahg478721 jgi|Araly1|478721|fgenesh2_kg.3__1422__AT3G13400.1
Length=1780
Score = 826 bits (447), Expect = 0.0
Identities = 1210/1568 (77%), Gaps = 93/1568 (6%)
Strand=Plus/Plus
Query 191 GACCCTTACTTCCACCACGTGTGGAACGTGACGTACGGAACCG-CATCTCCTCTCGGCGT 249
|||||||||||| || || |||||||||||| |||||||||| | | ||||| ||| |
Sbjct 100 GACCCTTACTTCTACTACACGTGGAACGTGACCTACGGAACCGTC-GCGCCTCTGGGCAT 158
Query 250 TCCACAACAAGTCATCCTCATCAACGGTCAATTCCCTGGTCCTAACATCAACTCGACTTC 309
||| ||||| || || ||||||||||| || |||||||| |||||| | |||||||| ||
Sbjct 159 TCCTCAACAGGTGATTCTCATCAACGGACAGTTCCCTGGCCCTAACCTAAACTCGACCTC 218
Query 310 TAACAACAACGTCATCGTTAATGTCTTCAACAACCTCGACGAGCCTTTCCTCATCACCTG 369
|||||||| ||| || | ||||||||||||||||||||||||||||||||| | |||||
Sbjct 219 CAACAACAATGTCGTCATCAATGTCTTCAACAACCTCGACGAGCCTTTCCTCTTGACCTG 278
Query 370 G-GCCGGAATCCAGCACAGGAAGAACTGCTGGCAAGATGGAAC-AGCTGGAACAATG-TG 426
| | ||| |||||||||||||||||| |||||||||||| | |||| || | ||
Sbjct 279 GAGT-GGACTCCAGCACAGGAAGAACTCCTGGCAAGATGGTGTGA-CTGGGACC-TCATG 335
Query 427 TCCGATCCCTCCGGGTCAG-AACTTTACATACCATTTCCAGCCAAAGGATCAAATCGGTA 485
|| ||||| | || || ||||| || |||||||||||||| ||||| || || ||||
Sbjct 336 CCCAATCCCAGCAGG-CACCAACTTCACTTACCATTTCCAGCCTAAGGACCAGATTGGTA 394
Query 486 GCTACTTCTACTACCCGA-CCACAGC-CATGCATCG-TGCCGCTGGTGGCTTT-GGTGGC 541
|||||||||||||||| | |||| || | | || || | | || ||||| ||| ||||||
Sbjct 395 GCTACTTCTACTACCC-ATCCACCGCTC-TCCACCGCTTC-GCCGGTGG-TTTCGGTGGC 450
Query 542 CTTCGTGTGAACAGCCGTCTATTGATCCCGGTTCCTTACGCTGACCCTGAAGATGACTAC 601
|| ||||| ||||||||||| | |||||||| |||||||||||||| ||||| ||| |
Sbjct 451 CTCCGTGTCAACAGCCGTCTCCTCATCCCGGTCCCTTACGCTGACCCCGAAGACGACCGC 510
Query 602 ACTATCCTTATCAACGACTGGTACACCAAAAGCCATACTCAGCTC--AAGAAGTTCCTCG 659
|| ||||| |||||||||||||||||||| ||||| || | |||| ||||| ||||| |
Sbjct 511 ACCATCCTCATCAACGACTGGTACACCAAGAGCCACAC-C-GCTCTCAAGAACTTCCTTG 568
Query 660 ACAGTGGTCGTACTATTGG-TCGTCCTGATGGCATTCTCATCAACGGTAAATCCGGGAAA 718
|||||||||| ||| | || || || || || ||||||||||||| |||||||| |||
Sbjct 569 ACAGTGGTCGCACTCTAGGATCCCCC-GACGGTGTTCTCATCAACGGGAAATCCGGTAAA 627
Query 719 ACTGATGGCTCTGACAAAC-CTC-T-T-TTCACTTTGAAGCCAGGGAAA-ACATACAGAG 773
| | ||| |||| | ||| | | ||||| ||||||| || ||| || |||| ||
Sbjct 628 A-TC--GGCGGAAACAA-CGCTCCTCTCTTCACAATGAAGCCCGG-AAAGACTTACA-AG 681
Query 774 TTC-GTATCTGTAACGTGGG-TCTCAAGGC-ATCTCTTAACTTCAGGATTCA-GAACCAC 829
| | | ||||| || || || | |||| | | |||||||||||||||| || | ||||
Sbjct 682 TACAGGATCTGCAATGTTGGAT-TCAAATCCA-CTCTTAACTTCAGGATCCAAGG-CCAC 738
Query 830 AAAATGAAGCTTGTCGAGATGGAAGGCTCACATGTTCTACAAAACGACTATGACTCGCTT 889
|| ||||||||||| |||||||||||||| || ||||| || |||||||| ||||| |||
Sbjct 739 AAGATGAAGCTTGTTGAGATGGAAGGCTCCCACGTTCTCCAGAACGACTACGACTCTCTT 798
Query 890 GATGTCCATGTCGGTCAGTGTTTTGGTGTAATCGTCACGGCAGACCAAGAA-CCTAAAGA 948
||||||||||| || ||||| || | || | || || || ||||||| || || ||
Sbjct 799 GATGTCCATGTTGGACAGTGCTTCGCCGTGCTAGTGACCGCTGACCAAGTGGCC-AA-GA 856
Query 949 T-TACTACATGATTGCTTCCACAAGGTTCTTGAAGAAACCTCTGA-CAACCACAGGAT-T 1005
||||||||| |||| ||||| |||||| | ||||| ||| || | || | |
Sbjct 857 ACTACTACATGGTTGCATCCACTAGGTTCCTCAAGAAGGAAGTGAGCA-CTGTTGG-TGT 914
Query 1006 GCTCCGCTACGAGGGAGGCAAAGGTCCTGCGTCTT-CTCAGCTACCTGCGGCCCCCGTTG 1064
| | ||||||| ||| |||| | || || || | || | || ||| ||||| |
Sbjct 915 GATGAGCTACGAAGGAAGCAACGTTCAGGCTTCAAACG-AGATCCCCAAGGCTCCCGTCG 973
Query 1065 GTTGGGCTTGGTCTTTGAATCAGTACCGATCTTTCAGGTGGAACTTGACAGCCAGCGCCG 1124
| |||||||||||| | ||||||| | |||| ||||| |||||||| || ||||| ||||
Sbjct 974 GCTGGGCTTGGTCTCTCAATCAGTTCAGATCCTTCAGATGGAACTTAACCGCCAGTGCCG 1033
Query 1125 CTAGACCTAACCCACAAGGCTCGTACCACTACGGAAAAATTAATATCACTCGCACCATCA 1184
||||||||||||| ||||| || ||||| |||||||| || || ||||| || |||||||
Sbjct 1034 CTAGACCTAACCCTCAAGGATCTTACCATTACGGAAAGATCAACATCACCCGTACCATCA 1093
Query 1185 AGCTCGTGAACACTCAGGGAAA--GGTCGA-TGGCAAGCTTAGGTACGCGTTGAGCGGGG 1241
|||||| ||||| || | || ||| || ||| ||| | |||| | ||| | ||| |
Sbjct 1094 AGCTCGCCAACAC-CAAG-AATTTGGT-GAATGGAAAGGTCAGGTTTGGGTTCAACGGTG 1150
Query 1242 TCTCCCACACCGAC-CCTGAGACACCTCTC-AAGCTTGCTGAGTACTTCGGCGT-TGCTG 1298
| || ||| ||| || ||||| || || ||||| |||||||||||||| | | | |
Sbjct 1151 TGTCACACGTTGACACC-GAGACTCC-CTTGAAGCTCGCTGAGTACTTCGGTATGTCC-G 1207
Query 1299 ATAAGGTTTTCAAGTACGACACCATCTCGGAC-AACCCAA-ATCCTGATCAGATCAAGAA 1356
| ||||| ||||| ||| || |||| |||| |||| | | || | |||||| ||
Sbjct 1208 AGAAGGTCTTCAAATACAACGTCATCAAGGACGAACC-AGCAGCC--A--AGATCAC-AA 1261
Query 1357 CA-TCA-AGATCGAACCCAATGTTCTTAACATCACTCACCGCACCTTCATTGAAGTCGTG 1414
|| | | || |||| |||||||| || ||||||||| ||| ||||| | |||||| |
Sbjct 1262 CACTAACAG-TCGAGCCCAATGTCCTCAACATCACTTTCCGTACCTTTGTCGAAGTCATC 1320
Query 1415 TTCGAGAACCACGAGAGGAGTGTCCAGTCTTGGCATTTGGACGGCTATTCCTTCTTCGCT 1474
|||||||||||||||| || | || |||| ||||||||||| || ||||||||||||
Sbjct 1321 TTCGAGAACCACGAGAAAAGCATGCAATCTTTCCATTTGGACGGTTACTCCTTCTTCGCT 1380
Query 1475 GTAGCGGTT--GAGCCAGGGACATGGACACCAGAGAAGAGGAAGAACTACAACCTT-CTA 1531
|| || || |||||||| | |||||||||||||||||| |||||||||||| || ||
Sbjct 1381 GTCGC--TTCCGAGCCAGGAAGATGGACACCAGAGAAGAGAAAGAACTACAAC-TTGCTC 1437
Query 1532 GATGCAGTGAGCCGACACACAGTCCAGGTCTACCCCAAGTGTTGGGCTGCAAT-CTTGCT 1590
||||| || ||| ||||||| || ||||| |||||||| | ||| | || || || ||
Sbjct 1438 GATGCGGTTAGCAGACACACCGTGCAGGTGTACCCCAAATCCTGGTCAGCCATTCT--CT 1495
Query 1591 C-ACATTCGACAACTGT-GGAATGTGGAACATTAGGTCGGAGAAC-GCAGAAAGACGCTA 1647
||||||||||| || || ||||||||||| || || |||||| | || ||| | ||
Sbjct 1496 TGACATTCGACAA-TGCCGGTATGTGGAACATCAGATCAGAGAACTGG-GAGAGAAGATA 1553
Query 1648 CTTGGGACAGCAACTGTACG-CAAGCGT-CTTGTCACCAGAAAAATCTCTCCGGGACGAA 1705
|||||| |||||| |||||| || | || || |||||| |||||||| || | |||||
Sbjct 1554 CTTGGGCCAGCAATTGTACGTCA-GTGTTCT-GTCACCTGAAAAATCACTAAGAGACGAG 1611
Query 1706 TACAACAT 1713
||||||||
Sbjct 1612 TACAACAT 1619
> Ahg474617 jgi|Araly1|474617|fgenesh2_kg.1__4571__AT1G55560.1
Length=1929
Score = 693 bits (375), Expect = 0.0
Identities = 1172/1547 (76%), Gaps = 93/1547 (6%)
Strand=Plus/Plus
Query 212 TGGAACGTGACGTACGGAACCGCATCTCCTCTCGGCGTTCCACAACAA-GTCATCCTCAT 270
||||||||||| ||||||||||| || |||||||| ||||| ||| || || || |||||
Sbjct 211 TGGAACGTGACTTACGGAACCGCCTCACCTCTCGGTGTTCCTCAA-AAGGTGATTCTCAT 269
Query 271 CAACGGTCAATTCCCTGGTCCTAACATCAACTCGACTTCTAACAACAACGTCATCGTTAA 330
||||||||||||||||||||||||| | ||||| || ||||||||||||||| || | ||
Sbjct 270 CAACGGTCAATTCCCTGGTCCTAACCTTAACTCAACCTCTAACAACAACGTCGTCATCAA 329
Query 331 TGTCTTCAACAACCTCGACGAGCCTTTCCTCATCACCTGG-GCCGGAATCCAGCACAGGA 389
|||||||||| |||| ||||| ||||||||| | |||||| || ||| || |||||||||
Sbjct 330 TGTCTTCAACCACCTAGACGAACCTTTCCTCTTGACCTGGAGCGGGATTC-AGCACAGGA 388
Query 390 AGAACTGCTGGCAAGATGGAACAGCTGGAACAATG-TGTCCGATCCCTCCGGGTCAGAAC 448
||||||||||||||||||| ||||| || | || || ||||| | || ||||||
Sbjct 389 AGAACTGCTGGCAAGATGGTGTGGCTGGGACT-TCATGCCCCATCCCAGCAGGACAGAAC 447
Query 449 TTTACATACCATTTCCAGCCAAAGGATCAAATCGGTAGCT-ACTTCTACTACCCGACCAC 507
||||| || |||||||| || ||||| || || ||| || ||||||| |||||||||||
Sbjct 448 TTTACTTATCATTTCCAACCTAAGGACCAGATTGGTT-CTTACTTCTATTACCCGACCAC 506
Query 508 AGC-CATGCATCG-TGCCGCTGGTGGCTTTGGTGGCCTTCGTGTGAACAGCCGTCTA-TT 564
| | | || || | |||||||| |||||||| || ||||| |||||||| || ||
Sbjct 507 TTCTC-TCCACCGCTTT-GCTGGTGGTTTTGGTGGTCTCCGTGTCAACAGCCGACTCCTT 564
Query 565 GATCCCGGTTCCTTACGCTGACCCTGAAGATGACTACACTATCCTTATCAACGACTGGTA 624
|| || |||||||| ||||| ||||| |||||||||||| | ||| || ||||||||
Sbjct 565 -ATTCCTGTTCCTTATGCTGATCCTGAGGATGACTACACTGTTCTTCTCGGTGACTGGTA 623
Query 625 CACCAAAAG-CCATACT-CAGCTCAAGAAGTTCCTCGACAGTGGTCGTACTATTGG-TCG 681
||| | | ||| ||| | |||||||| ||||| |||||||| || || |||| | |
Sbjct 624 CAC-AGCTGGCCACACTGCT-CTCAAGAACTTCCTTGACAGTGGACGCACCCTTGGATTG 681
Query 682 TCCTGATGGCATTCTCATCAACGGTAAA-TCCGGGAAAACTG--ATGGCTCTGA-CAAAC 737
||| | || || | ||||| || ||| || || ||| || | || || | | |
Sbjct 682 -CCTAACGGTGTTTTGATCAATGG-AAAGTCTGG-AAAGGTGGGA-GGAAA-GAACGAGC 736
Query 738 CTCTT-TTCACTTTGAAGCCAGGGAAA-ACATACAGAGTTC-GTATCTGTAACGT-GGGT 793
|| || ||||| ||||||| || ||| || |||| ||| | | |||| || || ||||
Sbjct 737 CT-TTGTTCACAATGAAGCCTGG-AAAGACTTACA-AGTACAGGCTCTGCAATGTTGGGT 793
Query 794 CTCAAGGC-ATCTCTTAACTTCAGGATTCAGAACCACAAAATGAAGCTTGTCGAGATGGA 852
||||| | | | |||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 794 -TCAAGTCTA-CACTTAACTTCAGGATCCAGAACCACAAGATGAAGCTTGTGGAGATGGA 851
Query 853 AGGCTCACATGTTCTACAAAACGACTATGACTCGCTTGATGTCCATGTCGGTCAGTG-TT 911
||| || |||||||| || |||||||| ||||| || |||||||||||||| ||||| ||
Sbjct 852 AGGATCCCATGTTCTTCAGAACGACTACGACTCTCTCGATGTCCATGTCGGCCAGTGCTT 911
Query 912 TTG-GTGTAATCGTCACGGCAGACCAAGAACCTAAAGATTACTACATGATTGCTTCCACA 970
|| || | | || || || ||||| | | |||| |||||||||||| |||| || ||
Sbjct 912 TTCAGT-TCTT-GTGACTGCTGACCAGGCAGCTAAGGATTACTACATGGTTGCATCGACT 969
Query 971 AGGTTCTTGAAGAA--ACCTCTGA-CAACCACAGGAT-TGCTCCGCTACGAGGGAGGCAA 1026
|||||| | ||||| | | ||| || || || | || |||| || |||||| ||||
Sbjct 970 AGGTTCCTCAAGAAGGAG-T-TGAGCA-CCGTGGG-TGTGATCCGGTATGAGGGAAGCAA 1025
Query 1027 AGGTCCTGCGTCTTCTCAGCTACCTGCGGCCCCCGTTGGTTGGGCTTGGTCTTTGAATCA 1086
| || || || || |||| || ||| ||| |||| ||||||||||||||||| ||
Sbjct 1026 CGTTCAGGCTTCAGCTGAGCTCCCCAAGGCTCCCATTGGATGGGCTTGGTCTTTGAACCA 1085
Query 1087 GTACCGATCTTTCAGGTGGAAC-TTGACAGCCAGCGCCGCTAGACCTAACCCACAAGGCT 1145
|| | ||||||||||||||| || || || || || || || ||||||||||| ||||
Sbjct 1086 GTTTAGGTCTTTCAGGTGGAACCTT-ACCGCTAGTGCTGCCAGGCCTAACCCACAGGGCT 1144
Query 1146 CGTACCACTACGGAAAAATTAATATCACTCGCACCATCAAGCTCGTGAACACTCAGGGAA 1205
| ||||| ||||||||||| || ||||| || | ||||||||| || ||| || || |
Sbjct 1145 CATACCATTACGGAAAAATCAACATCACCCGTAGCATCAAGCTTGTCAACTCTAAGAGCG 1204
Query 1206 AGGTCGATGGCAA-GCTTAGGTACGCGTTG-AGCGGGGTCTCCCACACCGAC-CCTGAGA 1262
||| || ||||| | | ||| | ||| | ||| || || || ||| || ||||
Sbjct 1205 TGGTTGACGGCAAAG-TCCGGTTTG-GTTTCAACGGTGTATCACATGTTGACACC-GAGA 1261
Query 1263 CACCTCTCAAGCTTGCTGAGTACTTCGGCGTTG-CTGATAAGGTTTTCAAGTACGACACC 1321
| ||| | ||||| |||||||||||| | || | || ||||| ||||||||| |
Sbjct 1262 CTCCTTTGAAGCTAGCTGAGTACTTCCA-GATGTCAGAGAAGGTGTTCAAGTACAATGTG 1320
Query 1322 ATCTCGGACAACCCAAATCCTGATCAGA-TCA-AGAACATCAAGATCGAAC--CC-AATG 1376
||| |||| | || | | | || | ||| || ||| | | | || || ||||
Sbjct 1321 ATCAAGGACGAGCC---TGCAGC-CAAAATCACAG--CATTGAC-T-GTACAGCCTAATG 1372
Query 1377 TTCTTAACATCACTCACCGCACCTTCATTGA-AGTCGTGTTCGAGAACCACGAGAGGAGT 1435
|||| ||||||||| ||| ||||| | || | || | |||||||||||||||| |||
Sbjct 1373 TTCTCAACATCACTTTCCGTACCTTTGTAGAGA-TCATTTTCGAGAACCACGAGAAGAGC 1431
Query 1436 GTCCAGTC-TTGGCATTTGGACGGCTATTCCTTCTTCGCTGTAGCGGT-TGAGCCAGGGA 1493
| ||||| || |||||||| || || |||||||||||||| ||| | ||||||||| |
Sbjct 1432 ATGCAGTCATTC-CATTTGGATGGTTACTCCTTCTTCGCTGTCGCG-TCTGAGCCAGGAA 1489
Query 1494 CATGGACACCAGAGAAGAGGAAGAACTACAACCTT-CTAGATGCAGTGAGCCGACACACA 1552
|||||||| || ||||| |||||||||||| || || ||||| || ||| |||||||
Sbjct 1490 GGTGGACACCTGAAAAGAGAAAGAACTACAAC-TTGCTCGATGCGGTTAGCAGACACACC 1548
Query 1553 GTCCAGGTCTACCCCAAGTGTTGGGCTGCAATCTTGCTC-ACATTCGACAACTGT-GGAA 1610
|| || || |||||||||| |||| | || ||| | || |||||||||||| | || |
Sbjct 1549 GTGCAAGTATACCCCAAGTCTTGGTCAGCTATCCT-CTTGACATTCGACAAC-GCCGGTA 1606
Query 1611 TGTGGAACATTAGGTCGGAGAACGCAGAAAG-ACGCTACTTGGGAC-AGCAACTGTACG- 1667
|||||||||| ||||| |||||| || || | | ||| | || | ||||| |||| |
Sbjct 1607 TGTGGAACATCAGGTCTGAGAACTTGGAGAGGA-GATACCTAGG-CGAGCAATTGTATGT 1664
Query 1668 CAAGCGT-CTTGTCACCAGAAAAATCTCTCCGGGACGAATACAACAT 1713
|| | || || ||||| || ||||| || ||||||| ||||||||
Sbjct 1665 CA-GTGTTCTA-TCACCCGAGAAATCGCTAAGGGACGAGTACAACAT 1709
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78542085190
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5