BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G55570.1 Length=2088 Score E Sequences producing significant alignments: (Bits) Value Ahg924070 jgi|Araly1|924070|scaffold_105351.1 2848 0.0 Ahg478720 jgi|Araly1|478720|fgenesh2_kg.3__1421__AT3G13390.1 1434 0.0 Ahg478721 jgi|Araly1|478721|fgenesh2_kg.3__1422__AT3G13400.1 826 0.0 Ahg474617 jgi|Araly1|474617|fgenesh2_kg.1__4571__AT1G55560.1 693 0.0 > Ahg924070 jgi|Araly1|924070|scaffold_105351.1 Length=1709 Score = 2848 bits (1542), Expect = 0.0 Identities = 1655/1711 (97%), Gaps = 2/1711 (0%) Strand=Plus/Plus Query 95 TAATAATAAAGTTTACTATTAATGAAGGGAGGGGTTAAACTTTTGGCCGTGTGCCTTTGC 154 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TAATAATAAAGTTTACTATTAATGAAGGGAGGGGTTAAACTTTTGGCCGTGTGCCTTTGT 60 Query 155 GTGGCCACGGCGACCGTCATGATGGTCCAAGCGGAGGACCCTTACTTCCACCACGTGTGG 214 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GTGGCCACGGCGACCGTCATGATGGTCCAAGCGGAGGACCCTTACTTCCACCACGTGTGG 120 Query 215 AACGTGACGTACGGAACCGCATCTCCTCTCGGCGTTCCACAACAAGTCATCCTCATCAAC 274 || |||||||||||||||||||||||||| |||||||||||||||||||| ||||| ||| Sbjct 121 AATGTGACGTACGGAACCGCATCTCCTCTAGGCGTTCCACAACAAGTCATTCTCATTAAC 180 Query 275 GGTCAATTCCCTGGTCCTAACATCAACTCGACTTCTAACAACAACGTCATCGTTAATGTC 334 ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 181 GGTCAATTCCCTGGTCCTAACATCAACTCCACTTCTAACAACAACGTCATCGTTAATGTT 240 Query 335 TTCAACAACCTCGACGAGCCTTTCCTCATCACCTGGGCCGGAATCCAGCACAGGAAGAAC 394 ||||||||||||||||||||||||||||| |||||| |||||||||||||| |||||| Sbjct 241 TTCAACAACCTCGACGAGCCTTTCCTCATTACCTGGAATGGAATCCAGCACAGAAAGAAC 300 Query 395 TGCTGGCAAGATGGAACAGCTGGAACAATGTGTCCGATCCCTCCGGGTCAGAACTTTACA 454 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| Sbjct 301 TGCTGGCAAGATGGAACAGCTGGAACAATGTGTCCCATCCCTCCGGGTCAGAACTTCACA 360 Query 455 TACCATTTCCAGCCAAAGGATCAAATCGGTAGCTACTTCTACTACCCGACCACAGCCATG 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 361 TACCATTTCCAGCCAAAGGATCAAATCGGTAGCTACTTCTACTACCCGACCACAGCCATG 420 Query 515 CATCGTGCCGCTGGTGGCTTTGGTGGCCTTCGTGTGAACAGCCGTCTATTGATCCCGGTT 574 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 421 CATCGTGCCGCTGGTGGCTTTGGTGGCCTTCGTGTGAACAGCCGTCTCTTGATCCCGGTT 480 Query 575 CCTTACGCTGACCCTGAAGATGACTACACTATCCTTATCAACGACTGGTACACCAAAAGC 634 || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 481 CCGTACGCTGACCCTGAAGATGACTACACTGTCCTTATCAACGACTGGTACACCAAAAGC 540 Query 635 CATACTCAGCTCAAGAAGTTCCTCGACAGTGGTCGTACTATTGGTCGTCCTGATGGCATT 694 || ||||||||||||||||| |||||||||||||| |||||||| ||||| ||||||||| Sbjct 541 CACACTCAGCTCAAGAAGTTTCTCGACAGTGGTCGCACTATTGGCCGTCCAGATGGCATT 600 Query 695 CTCATCAACGGTAAATCCGGGAAAACTGATGGCTCTGACAAACCTCTTTTCACTTTGAAG 754 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 601 CTCATCAACGGTAAATCCGGGAAAACTGATGGCTCTGACAAACCTCTTTTCACCTTGAAG 660 Query 755 CCAGGGAAAACATACAGAGTTCGTATCTGTAACGTGGGTCTCAAGGCATCTCTTAACTTC 814 ||||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 661 CCAGGAAAAACCTACAGAGTCCGTATCTGTAACGTGGGTCTCAAGGCATCTCTTAACTTC 720 Query 815 AGGATTCAGAACCACAAAATGAAGCTTGTCGAGATGGAAGGCTCACATGTTCTACAAAAC 874 || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||| Sbjct 721 AGAATTCAGAACCACAAAATGAAGCTTGTCGAGATGGAAGGTTCACACGTTCTACAAAAC 780 Query 875 GACTATGACTCGCTTGATGTCCATGTCGGTCAGTGTTTTGGTGTAATCGTCACGGCAGAC 934 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GACTATGACTCCCTTGATGTCCATGTCGGTCAGTGTTTTGGTGTAATCGTCACGGCAGAC 840 Query 935 CAAGAACCTAAAGATTACTACATGATTGCTTCCACAAGGTTCTTGAAGAAACCTCTGACA 994 ||||||| |||||||||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 841 CAAGAACTTAAAGATTACTACATGGTTGCTTCCACAAGGTTCTTGAAGAAACCTTTGACA 900 Query 995 ACCACAGGATTGCTCCGCTACGAGGGAGGCAAAGGTCCTGCGTCTTCTCAGCTACCTGCG 1054 || ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 901 ACGACAGGGTTACTCCGCTACGAGGGAGGCAAAGGTCCTGCCTCTTCTCAGCTACCTGCC 960 Query 1055 GCCCCCGTTGGTTGGGCTTGGTCTTTGAATCAGTACCGATCTTTCAGGTGGAACTTGACA 1114 ||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| Sbjct 961 GCCCCCGTTGGTTGGGCTTGGTCTTTGAACCAGTTCCGATCTTTCAGGTGGAACTTGACA 1020 Query 1115 GCCAGCGCCGCTAGACCTAACCCACAAGGCTCGTACCACTACGGAAAAATTAATATCACT 1174 |||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 1021 GCCAGCGCAGCTAGACCTAACCCACAAGGCTCGTACCACTACGGTAAAATTAACATCACT 1080 Query 1175 CGCACCATCAAGCTCGTGAACACTCAGGGAAAGGTCGATGGCAAGCTTAGGTACGCGTTG 1234 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1081 CGCACCATCAAGCTCGTGAACACTCAGGGAAAGGTCGATGGCAAGCTTAGGTACGCGTTG 1140 Query 1235 AGCGGGGTCTCCCACACCGACCCTGAGACACCTCTCAAGCTTGCTGAGTACTTCGGCGTT 1294 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 1141 AGCGGGGTCTCCCACACCGACCCTGAGACACCTCTCAAGCTCGCTGAGTACTTCGGCGTT 1200 Query 1295 GCTGATAAGGTTTTCAAGTACGACACCATCTCGGACAACCCAAATCCTGATCAGATCAAG 1354 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1201 GCTGATAAGGTTTTCAAGTACGACACCATCTCGGACAACCCAAATCCCGATCAGATCAAG 1260 Query 1355 AACATCAAGATCGAACCCAATGTTCTTAACATCACTCACCGCACCTTCATTGAAGTCGTG 1414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1261 AACATCAAGATCGAACCCAATGTTCTTAACATCACTCACCGCACCTTCATTGAAGTCGTG 1320 Query 1415 TTCGAGAACCACGAGAGGAGTGTCCAGTCTTGGCATTTGGACGGCTATTCCTTCTTCGCT 1474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1321 TTCGAGAACCACGAGAGGAGTGTCCAGTCTTGGCATTTGGACGGCTATTCCTTCTTCGCT 1380 Query 1475 GTAGCGGTTGAGCCAGGGACATGGACACCAGAGAAGAGGAAGAACTACAACCTTCTAGAT 1534 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1381 GTAGCGGTTGAGCCAGGGACATGGACACCAGAGAAGAGGAAGAACTACAACCTTCTAGAC 1440 Query 1535 GCAGTGAGCCGACACACAGTCCAGGTCTACCCCAAGTGTTGGGCTGCAATCTTGCTCACA 1594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1441 GCAGTGAGCCGACACACAGTCCAGGTCTACCCCAAGTGTTGGGCTGCAATCTTGCTCACA 1500 Query 1595 TTCGACAACTGTGGAATGTGGAACATTAGGTCGGAGAACGCAGAAAGACGCTACTTGGGA 1654 ||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||||||| Sbjct 1501 TTCGACAACTGTGGAATGTGGAACATTAGGTCGGAGAACTCAGAGAGACGTTACTTGGGA 1560 Query 1655 CAGCAACTGTACGCAAGCGTCTTGTCACCAGAAAAATCTCTCCGGGACGAATACAACATG 1714 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 1561 CAGCAACTGTACGCAAGCGTCTTGTCACCGGAAAAATCTCTCCGGGACGAATACAACATG 1620 Query 1715 CCGGAGACAAGCCTTCAATGTGGTCTTGTCAAGGGCAAGCCTAAGGTTAACCCTTATGCC 1774 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 1621 CCGGAGACAAGCCTCCAATGTGGTCTCGTCAAGGGCAAGCCTAAGGTTAACCCTTATGCC 1680 Query 1775 GGAGCTTAATTTGCTTTCTTTGAAATTATTT 1805 |||||||||| | ||||||||| ||||||| Sbjct 1681 GGAGCTTAATAT--TTTCTTTGAGATTATTT 1709 > Ahg478720 jgi|Araly1|478720|fgenesh2_kg.3__1421__AT3G13390.1 Length=2117 Score = 1434 bits (776), Expect = 0.0 Identities = 1381/1676 (82%), Gaps = 30/1676 (2%) Strand=Plus/Plus Query 123 GAGGGGTTAAACTTTTGGCCGTGTGCCTTTGCGTGGCCAC-GGCG-ACCGTCATGATGGT 180 ||||||||||||| ||||||| |||||| | | ||||| | | || | || || |||| Sbjct 112 GAGGGGTTAAACTCTTGGCCGCGTGCCTCTACCTGGCCGCAGCCGCAACG--GTGGTGGT 169 Query 181 CCAAGCGGAGGACCCTTACTTCCACCACGTGTGGAACGTGACGTACGGAACCGCATCTCC 240 || ||| || |||||||||||||| ||||| ||||||||||| |||||||||| ||||| Sbjct 170 CCGAGCAGAAGACCCTTACTTCCATCACGTATGGAACGTGACCTACGGAACCGTGTCTCC 229 Query 241 TCTCGGCGTTCCACAACAAGTCATCCTCATCAACGGTCAATTCCCTGGTCCTAACATCAA 300 ||||||||||||||||||||||| || |||||||| |||||||||||||| |||||||| Sbjct 230 GCTCGGCGTTCCACAACAAGTCATTCTGATCAACGGCCAATTCCCTGGTCCCAACATCAA 289 Query 301 CTCGACTTCTAACAACAACGTCATCGTTAATGTCTTCAACAACCTCGACGAGCCTTTCCT 360 ||| || || ||||||||| ||||| | ||||||||||||||||||||||| |||||||| Sbjct 290 CTCAACCTCCAACAACAACATCATCATCAATGTCTTCAACAACCTCGACGAACCTTTCCT 349 Query 361 CATCACCTGGGCCGGAATCCAGCACAGGAAGAACTGCTGGCAAGATGGAACAGCTGGAAC 420 | |||| ||| || ||||| |||||||||||||| ||||||||||| || | ||||| Sbjct 350 CCTCACATGGAATGGGATCCAACACAGGAAGAACTGTTGGCAAGATGGGACTCCAGGAAC 409 Query 421 AATGTGTCCGATCCCT-CCGGGTCA-GAACTTTACATACCATTTCCAGCCAAAGGATCAA 478 ||||||||||| | || || || |||| || |||||||||||||| |||||||| Sbjct 410 TATGTGTCCGAT-AATGCCCGG-CACCAACTACACTTACCATTTCCAGCCTAAGGATCAG 467 Query 479 ATCGGTAGCTACTTCTACTACCCGACCACAGCCATGCATCGTGCCGCTGGTGGCTTTGGT 538 ||||| ||||| ||||||||||| | ||| ||| |||| ||| | |||||||| || ||| Sbjct 468 ATCGGAAGCTATTTCTACTACCCCAGCACCGCCTTGCACCGTTCTGCTGGTGGATTCGGT 527 Query 539 GGCCTTCGTGTGAACAGCCGTCTATTGATCCCGGTTCCTTACGCTGACCCTGAAGATGAC 598 || || ||||||||||||||||| | |||||||| |||||||||||||| ||||||||| Sbjct 528 GGACTCCGTGTGAACAGCCGTCTCCTCATCCCGGTCCCTTACGCTGACCCAGAAGATGAC 587 Query 599 TACACTATCCTT-ATCAACGACTGGTACACCAAAAGCCATACTCAGCTCAAGAAGTTCCT 657 ||||| | ||| ||| || |||||||| || ||||| || || | ||||| ||||| Sbjct 588 TACACCGT-CTTGATCGGTGATTGGTACACTAAGAGCCACACCCAATTGAAGAAATTCCT 646 Query 658 CGACAGTGGTCGTACTATTGGTCGTCCTGATGGCATTCTCATCAACGGTAAA-TCCGGGA 716 || | ||||||||| |||| ||||| ||||| |||||||||||||| ||| |||||| Sbjct 647 TGATGGCGGTCGTACTCTTGGCCGTCCAGATGGTATTCTCATCAACGG-AAAGGCCGGGA 705 Query 717 AA-ACTGATGGCTCTGACAAACCTCT-TTTCACTTTGAAG-CCAGGGAAA-ACATACAGA 772 || | ||||| || || |||||| ||| || ||| || || ||||| || ||||| Sbjct 706 AAGGC-GATGGATCCGATGCACCTCTCTTT-ACCTTG-AGACC-TGGAAAGACCTACAGG 761 Query 773 GTTCGTATCTGTAACGTGGGTCTCAAGGCATCTCTTAACTTCAGGATTCAGAACCACAAA 832 ||| | |||||||||||||||||||| ||||||||||||| ||||||||||| ||||| Sbjct 762 GTTAGGGTCTGTAACGTGGGTCTCAAGACATCTCTTAACTTTAGGATTCAGAATCACAAG 821 Query 833 ATGAAGCTTGTCGAGATGGAAGGCTCACATGTTCTACAAAACGACTATGACTCGCTTGAT 892 ||||||| || ||||||||||| || || ||||| || ||||| |||||||| || || Sbjct 822 TTGAAGCTCGTTGAGATGGAAGGATCGCACGTTCTCCAGAACGATTATGACTCTCTCGAC 881 Query 893 GTCCATGTCGGTCAGTGTTTTGGTGTAATCGTCACGGC-AGACCAAGAACCTAAAGATTA 951 || || ||||||||||||| || ||| | | || | | || ||| |||||||||| Sbjct 882 GTTCACGTCGGTCAGTGTTACGGAACCATCCTTTCCGCTA-ATCAGGAAGCTAAAGATTA 940 Query 952 CTACATGATTGCTTCCACAAGGTTCTTGAAGAAACCTCTGACAACCACAGGAT-TGCTCC 1010 ||||||| |||| ||| | |||||||||||| | | || || || || | | |||| Sbjct 941 CTACATGGTTGCATCCTCTAGGTTCTTGAAGTCGGTTATTACCACTACCGG-TCTTCTCC 999 Query 1011 GCTACGAGGGAGGCAAAGGTCCTGCGTCTTCTCAGCTACCTGC-GGCCCCCGTTGGTTGG 1069 |||| |||||||| ||||| || || ||||| |||||||| | || || ||||| ||| Sbjct 1000 GCTATGAGGGAGGAAAAGGCCCCGCTTCTTCGCAGCTACCCCCTGG-TCCAGTTGGCTGG 1058 Query 1070 GCTTGGTCTTTGAATCAGTACCGATCTTTCAGGTGGAACTTGACAGCCAGCGCCGCTAGA 1129 |||||||| ||||| |||| |||||||||||| ||||||||||| ||||| || || || Sbjct 1059 GCTTGGTCCTTGAACCAGTTCCGATCTTTCAGATGGAACTTGACCGCCAGTGCGGCCAGG 1118 Query 1130 CCTAACCCACAAGGCTCGTACCACTACGGAAAAATTAATATCACTCGCACCATCAAGCTC 1189 |||||||| || || || |||||||||||||| || || || || |||||||||||||| Sbjct 1119 CCTAACCCTCAGGGTTCTTACCACTACGGAAAGATCAACATTACACGCACCATCAAGCTT 1178 Query 1190 GTGAACACTCAGGGAAAGGTCGATGGCAAGCTTAGGTACGCGTTGAGCGGGGTCTCCCAC 1249 ||||||||||| || |||||| |||| ||||| ||||||||||||| ||| ||||| ||| Sbjct 1179 GTGAACACTCAAGGCAAGGTCAATGGAAAGCTCAGGTACGCGTTGAACGGAGTCTCGCAC 1238 Query 1250 ACCGACCCTGAGACACC-TCTCAAGCTTGCTGAGTACTTCGGCGTTGCTGATAAGGTTTT 1308 || |||||||| || || | | |||||||| |||||||| || ||||| || |||||||| Sbjct 1239 ACTGACCCTGAAACCCCAT-TGAAGCTTGCCGAGTACTTTGGTGTTGCCGACAAGGTTTT 1297 Query 1309 CAAGTACGACACCATCTCGGACAACCCAAATCCTGATCAGATCAAGAACATCAAGATCGA 1368 ||||||||||| |||| | || ||||||| || || || ||||||| |||||||||||| Sbjct 1298 CAAGTACGACAGCATCACTGATAACCCAACCCCAGAACAAATCAAGAGCATCAAGATCGA 1357 Query 1369 ACCCAATGTTCTTAACATCACTCACCGCACCTTCATTGAAGTCGTGTTCGAGAACCACGA 1428 || |||||||||||||||||||||||||||||||| || || ||||| ||||||||||| Sbjct 1358 GCCAAATGTTCTTAACATCACTCACCGCACCTTCATCGAGGTGGTGTTTGAGAACCACGA 1417 Query 1429 GAGGAGTGTCCAGTCTTGGCATTTGGACGGCTATTCCTTCTTCGCTGTAGCGGTTGAGCC 1488 || |||||| ||||| ||||| |||||||| || |||||||| || || || || ||||| Sbjct 1418 GAAGAGTGTTCAGTCGTGGCACTTGGACGGTTACTCCTTCTTTGCCGTCGCTGTCGAGCC 1477 Query 1489 AGGGACATGGACACCAGAGAAGAGGAAGAACTACAACCTTCTAGATGCAGTGAGCCGACA 1548 |||||| ||||| ||||||||||| ||||||||||||||||| || ||||||||| |||| Sbjct 1478 AGGGACTTGGACTCCAGAGAAGAGAAAGAACTACAACCTTCTGGACGCAGTGAGCAGACA 1537 Query 1549 CACAGTCCAGGTCTACCCCAAGTGTTGGGCTGCAATCTTGCTCACATTCGACAACTGTGG 1608 ||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||||| Sbjct 1538 CACAGTCCAAGTCTACCCAAAATGTTGGGCAGCAATCTTGCTCACATTCGACAACTGTGG 1597 Query 1609 AATGTGGAACATTAGGTCGGAGAACGCAGAAAGACGCTACTTGGGACAGCAACTGTACGC 1668 ||||||||||||| | || || ||| | || ||||| ||||| |||||||| || ||||| Sbjct 1598 AATGTGGAACATTCGATCTGAAAACTCCGAGAGACGTTACTTAGGACAGCAGCTTTACGC 1657 Query 1669 AAGCGTCTTGTCACCAGAAAAATCTCTCCGGGACGAATACAACATGCCGGAGACAAGCCT 1728 || |||||||||||||| ||||| || | || |||||||||||||| ||||||||||| Sbjct 1658 GAGTGTCTTGTCACCAGAGAAATCACTGAGAGATGAATACAACATGCCTGAGACAAGCCT 1717 Query 1729 TCAATGTGGTCTTGTCAAGGGCA-AGCCTAAGGTTAACCCTTATGCCGGAGCTTAA 1783 ||||||||||| |||||||| | | |||||| ||| ||||| || ||||| ||| Sbjct 1718 CCAATGTGGTCTAGTCAAGGGTACA-CCTAAGCCTAATCCTTACGCTGGAGCCTAA 1772 > Ahg478721 jgi|Araly1|478721|fgenesh2_kg.3__1422__AT3G13400.1 Length=1780 Score = 826 bits (447), Expect = 0.0 Identities = 1210/1568 (77%), Gaps = 93/1568 (6%) Strand=Plus/Plus Query 191 GACCCTTACTTCCACCACGTGTGGAACGTGACGTACGGAACCG-CATCTCCTCTCGGCGT 249 |||||||||||| || || |||||||||||| |||||||||| | | ||||| ||| | Sbjct 100 GACCCTTACTTCTACTACACGTGGAACGTGACCTACGGAACCGTC-GCGCCTCTGGGCAT 158 Query 250 TCCACAACAAGTCATCCTCATCAACGGTCAATTCCCTGGTCCTAACATCAACTCGACTTC 309 ||| ||||| || || ||||||||||| || |||||||| |||||| | |||||||| || Sbjct 159 TCCTCAACAGGTGATTCTCATCAACGGACAGTTCCCTGGCCCTAACCTAAACTCGACCTC 218 Query 310 TAACAACAACGTCATCGTTAATGTCTTCAACAACCTCGACGAGCCTTTCCTCATCACCTG 369 |||||||| ||| || | ||||||||||||||||||||||||||||||||| | ||||| Sbjct 219 CAACAACAATGTCGTCATCAATGTCTTCAACAACCTCGACGAGCCTTTCCTCTTGACCTG 278 Query 370 G-GCCGGAATCCAGCACAGGAAGAACTGCTGGCAAGATGGAAC-AGCTGGAACAATG-TG 426 | | ||| |||||||||||||||||| |||||||||||| | |||| || | || Sbjct 279 GAGT-GGACTCCAGCACAGGAAGAACTCCTGGCAAGATGGTGTGA-CTGGGACC-TCATG 335 Query 427 TCCGATCCCTCCGGGTCAG-AACTTTACATACCATTTCCAGCCAAAGGATCAAATCGGTA 485 || ||||| | || || ||||| || |||||||||||||| ||||| || || |||| Sbjct 336 CCCAATCCCAGCAGG-CACCAACTTCACTTACCATTTCCAGCCTAAGGACCAGATTGGTA 394 Query 486 GCTACTTCTACTACCCGA-CCACAGC-CATGCATCG-TGCCGCTGGTGGCTTT-GGTGGC 541 |||||||||||||||| | |||| || | | || || | | || ||||| ||| |||||| Sbjct 395 GCTACTTCTACTACCC-ATCCACCGCTC-TCCACCGCTTC-GCCGGTGG-TTTCGGTGGC 450 Query 542 CTTCGTGTGAACAGCCGTCTATTGATCCCGGTTCCTTACGCTGACCCTGAAGATGACTAC 601 || ||||| ||||||||||| | |||||||| |||||||||||||| ||||| ||| | Sbjct 451 CTCCGTGTCAACAGCCGTCTCCTCATCCCGGTCCCTTACGCTGACCCCGAAGACGACCGC 510 Query 602 ACTATCCTTATCAACGACTGGTACACCAAAAGCCATACTCAGCTC--AAGAAGTTCCTCG 659 || ||||| |||||||||||||||||||| ||||| || | |||| ||||| ||||| | Sbjct 511 ACCATCCTCATCAACGACTGGTACACCAAGAGCCACAC-C-GCTCTCAAGAACTTCCTTG 568 Query 660 ACAGTGGTCGTACTATTGG-TCGTCCTGATGGCATTCTCATCAACGGTAAATCCGGGAAA 718 |||||||||| ||| | || || || || || ||||||||||||| |||||||| ||| Sbjct 569 ACAGTGGTCGCACTCTAGGATCCCCC-GACGGTGTTCTCATCAACGGGAAATCCGGTAAA 627 Query 719 ACTGATGGCTCTGACAAAC-CTC-T-T-TTCACTTTGAAGCCAGGGAAA-ACATACAGAG 773 | | ||| |||| | ||| | | ||||| ||||||| || ||| || |||| || Sbjct 628 A-TC--GGCGGAAACAA-CGCTCCTCTCTTCACAATGAAGCCCGG-AAAGACTTACA-AG 681 Query 774 TTC-GTATCTGTAACGTGGG-TCTCAAGGC-ATCTCTTAACTTCAGGATTCA-GAACCAC 829 | | | ||||| || || || | |||| | | |||||||||||||||| || | |||| Sbjct 682 TACAGGATCTGCAATGTTGGAT-TCAAATCCA-CTCTTAACTTCAGGATCCAAGG-CCAC 738 Query 830 AAAATGAAGCTTGTCGAGATGGAAGGCTCACATGTTCTACAAAACGACTATGACTCGCTT 889 || ||||||||||| |||||||||||||| || ||||| || |||||||| ||||| ||| Sbjct 739 AAGATGAAGCTTGTTGAGATGGAAGGCTCCCACGTTCTCCAGAACGACTACGACTCTCTT 798 Query 890 GATGTCCATGTCGGTCAGTGTTTTGGTGTAATCGTCACGGCAGACCAAGAA-CCTAAAGA 948 ||||||||||| || ||||| || | || | || || || ||||||| || || || Sbjct 799 GATGTCCATGTTGGACAGTGCTTCGCCGTGCTAGTGACCGCTGACCAAGTGGCC-AA-GA 856 Query 949 T-TACTACATGATTGCTTCCACAAGGTTCTTGAAGAAACCTCTGA-CAACCACAGGAT-T 1005 ||||||||| |||| ||||| |||||| | ||||| ||| || | || | | Sbjct 857 ACTACTACATGGTTGCATCCACTAGGTTCCTCAAGAAGGAAGTGAGCA-CTGTTGG-TGT 914 Query 1006 GCTCCGCTACGAGGGAGGCAAAGGTCCTGCGTCTT-CTCAGCTACCTGCGGCCCCCGTTG 1064 | | ||||||| ||| |||| | || || || | || | || ||| ||||| | Sbjct 915 GATGAGCTACGAAGGAAGCAACGTTCAGGCTTCAAACG-AGATCCCCAAGGCTCCCGTCG 973 Query 1065 GTTGGGCTTGGTCTTTGAATCAGTACCGATCTTTCAGGTGGAACTTGACAGCCAGCGCCG 1124 | |||||||||||| | ||||||| | |||| ||||| |||||||| || ||||| |||| Sbjct 974 GCTGGGCTTGGTCTCTCAATCAGTTCAGATCCTTCAGATGGAACTTAACCGCCAGTGCCG 1033 Query 1125 CTAGACCTAACCCACAAGGCTCGTACCACTACGGAAAAATTAATATCACTCGCACCATCA 1184 ||||||||||||| ||||| || ||||| |||||||| || || ||||| || ||||||| Sbjct 1034 CTAGACCTAACCCTCAAGGATCTTACCATTACGGAAAGATCAACATCACCCGTACCATCA 1093 Query 1185 AGCTCGTGAACACTCAGGGAAA--GGTCGA-TGGCAAGCTTAGGTACGCGTTGAGCGGGG 1241 |||||| ||||| || | || ||| || ||| ||| | |||| | ||| | ||| | Sbjct 1094 AGCTCGCCAACAC-CAAG-AATTTGGT-GAATGGAAAGGTCAGGTTTGGGTTCAACGGTG 1150 Query 1242 TCTCCCACACCGAC-CCTGAGACACCTCTC-AAGCTTGCTGAGTACTTCGGCGT-TGCTG 1298 | || ||| ||| || ||||| || || ||||| |||||||||||||| | | | | Sbjct 1151 TGTCACACGTTGACACC-GAGACTCC-CTTGAAGCTCGCTGAGTACTTCGGTATGTCC-G 1207 Query 1299 ATAAGGTTTTCAAGTACGACACCATCTCGGAC-AACCCAA-ATCCTGATCAGATCAAGAA 1356 | ||||| ||||| ||| || |||| |||| |||| | | || | |||||| || Sbjct 1208 AGAAGGTCTTCAAATACAACGTCATCAAGGACGAACC-AGCAGCC--A--AGATCAC-AA 1261 Query 1357 CA-TCA-AGATCGAACCCAATGTTCTTAACATCACTCACCGCACCTTCATTGAAGTCGTG 1414 || | | || |||| |||||||| || ||||||||| ||| ||||| | |||||| | Sbjct 1262 CACTAACAG-TCGAGCCCAATGTCCTCAACATCACTTTCCGTACCTTTGTCGAAGTCATC 1320 Query 1415 TTCGAGAACCACGAGAGGAGTGTCCAGTCTTGGCATTTGGACGGCTATTCCTTCTTCGCT 1474 |||||||||||||||| || | || |||| ||||||||||| || |||||||||||| Sbjct 1321 TTCGAGAACCACGAGAAAAGCATGCAATCTTTCCATTTGGACGGTTACTCCTTCTTCGCT 1380 Query 1475 GTAGCGGTT--GAGCCAGGGACATGGACACCAGAGAAGAGGAAGAACTACAACCTT-CTA 1531 || || || |||||||| | |||||||||||||||||| |||||||||||| || || Sbjct 1381 GTCGC--TTCCGAGCCAGGAAGATGGACACCAGAGAAGAGAAAGAACTACAAC-TTGCTC 1437 Query 1532 GATGCAGTGAGCCGACACACAGTCCAGGTCTACCCCAAGTGTTGGGCTGCAAT-CTTGCT 1590 ||||| || ||| ||||||| || ||||| |||||||| | ||| | || || || || Sbjct 1438 GATGCGGTTAGCAGACACACCGTGCAGGTGTACCCCAAATCCTGGTCAGCCATTCT--CT 1495 Query 1591 C-ACATTCGACAACTGT-GGAATGTGGAACATTAGGTCGGAGAAC-GCAGAAAGACGCTA 1647 ||||||||||| || || ||||||||||| || || |||||| | || ||| | || Sbjct 1496 TGACATTCGACAA-TGCCGGTATGTGGAACATCAGATCAGAGAACTGG-GAGAGAAGATA 1553 Query 1648 CTTGGGACAGCAACTGTACG-CAAGCGT-CTTGTCACCAGAAAAATCTCTCCGGGACGAA 1705 |||||| |||||| |||||| || | || || |||||| |||||||| || | ||||| Sbjct 1554 CTTGGGCCAGCAATTGTACGTCA-GTGTTCT-GTCACCTGAAAAATCACTAAGAGACGAG 1611 Query 1706 TACAACAT 1713 |||||||| Sbjct 1612 TACAACAT 1619 > Ahg474617 jgi|Araly1|474617|fgenesh2_kg.1__4571__AT1G55560.1 Length=1929 Score = 693 bits (375), Expect = 0.0 Identities = 1172/1547 (76%), Gaps = 93/1547 (6%) Strand=Plus/Plus Query 212 TGGAACGTGACGTACGGAACCGCATCTCCTCTCGGCGTTCCACAACAA-GTCATCCTCAT 270 ||||||||||| ||||||||||| || |||||||| ||||| ||| || || || ||||| Sbjct 211 TGGAACGTGACTTACGGAACCGCCTCACCTCTCGGTGTTCCTCAA-AAGGTGATTCTCAT 269 Query 271 CAACGGTCAATTCCCTGGTCCTAACATCAACTCGACTTCTAACAACAACGTCATCGTTAA 330 ||||||||||||||||||||||||| | ||||| || ||||||||||||||| || | || Sbjct 270 CAACGGTCAATTCCCTGGTCCTAACCTTAACTCAACCTCTAACAACAACGTCGTCATCAA 329 Query 331 TGTCTTCAACAACCTCGACGAGCCTTTCCTCATCACCTGG-GCCGGAATCCAGCACAGGA 389 |||||||||| |||| ||||| ||||||||| | |||||| || ||| || ||||||||| Sbjct 330 TGTCTTCAACCACCTAGACGAACCTTTCCTCTTGACCTGGAGCGGGATTC-AGCACAGGA 388 Query 390 AGAACTGCTGGCAAGATGGAACAGCTGGAACAATG-TGTCCGATCCCTCCGGGTCAGAAC 448 ||||||||||||||||||| ||||| || | || || ||||| | || |||||| Sbjct 389 AGAACTGCTGGCAAGATGGTGTGGCTGGGACT-TCATGCCCCATCCCAGCAGGACAGAAC 447 Query 449 TTTACATACCATTTCCAGCCAAAGGATCAAATCGGTAGCT-ACTTCTACTACCCGACCAC 507 ||||| || |||||||| || ||||| || || ||| || ||||||| ||||||||||| Sbjct 448 TTTACTTATCATTTCCAACCTAAGGACCAGATTGGTT-CTTACTTCTATTACCCGACCAC 506 Query 508 AGC-CATGCATCG-TGCCGCTGGTGGCTTTGGTGGCCTTCGTGTGAACAGCCGTCTA-TT 564 | | | || || | |||||||| |||||||| || ||||| |||||||| || || Sbjct 507 TTCTC-TCCACCGCTTT-GCTGGTGGTTTTGGTGGTCTCCGTGTCAACAGCCGACTCCTT 564 Query 565 GATCCCGGTTCCTTACGCTGACCCTGAAGATGACTACACTATCCTTATCAACGACTGGTA 624 || || |||||||| ||||| ||||| |||||||||||| | ||| || |||||||| Sbjct 565 -ATTCCTGTTCCTTATGCTGATCCTGAGGATGACTACACTGTTCTTCTCGGTGACTGGTA 623 Query 625 CACCAAAAG-CCATACT-CAGCTCAAGAAGTTCCTCGACAGTGGTCGTACTATTGG-TCG 681 ||| | | ||| ||| | |||||||| ||||| |||||||| || || |||| | | Sbjct 624 CAC-AGCTGGCCACACTGCT-CTCAAGAACTTCCTTGACAGTGGACGCACCCTTGGATTG 681 Query 682 TCCTGATGGCATTCTCATCAACGGTAAA-TCCGGGAAAACTG--ATGGCTCTGA-CAAAC 737 ||| | || || | ||||| || ||| || || ||| || | || || | | | Sbjct 682 -CCTAACGGTGTTTTGATCAATGG-AAAGTCTGG-AAAGGTGGGA-GGAAA-GAACGAGC 736 Query 738 CTCTT-TTCACTTTGAAGCCAGGGAAA-ACATACAGAGTTC-GTATCTGTAACGT-GGGT 793 || || ||||| ||||||| || ||| || |||| ||| | | |||| || || |||| Sbjct 737 CT-TTGTTCACAATGAAGCCTGG-AAAGACTTACA-AGTACAGGCTCTGCAATGTTGGGT 793 Query 794 CTCAAGGC-ATCTCTTAACTTCAGGATTCAGAACCACAAAATGAAGCTTGTCGAGATGGA 852 ||||| | | | |||||||||||||| ||||||||||| ||||||||||| |||||||| Sbjct 794 -TCAAGTCTA-CACTTAACTTCAGGATCCAGAACCACAAGATGAAGCTTGTGGAGATGGA 851 Query 853 AGGCTCACATGTTCTACAAAACGACTATGACTCGCTTGATGTCCATGTCGGTCAGTG-TT 911 ||| || |||||||| || |||||||| ||||| || |||||||||||||| ||||| || Sbjct 852 AGGATCCCATGTTCTTCAGAACGACTACGACTCTCTCGATGTCCATGTCGGCCAGTGCTT 911 Query 912 TTG-GTGTAATCGTCACGGCAGACCAAGAACCTAAAGATTACTACATGATTGCTTCCACA 970 || || | | || || || ||||| | | |||| |||||||||||| |||| || || Sbjct 912 TTCAGT-TCTT-GTGACTGCTGACCAGGCAGCTAAGGATTACTACATGGTTGCATCGACT 969 Query 971 AGGTTCTTGAAGAA--ACCTCTGA-CAACCACAGGAT-TGCTCCGCTACGAGGGAGGCAA 1026 |||||| | ||||| | | ||| || || || | || |||| || |||||| |||| Sbjct 970 AGGTTCCTCAAGAAGGAG-T-TGAGCA-CCGTGGG-TGTGATCCGGTATGAGGGAAGCAA 1025 Query 1027 AGGTCCTGCGTCTTCTCAGCTACCTGCGGCCCCCGTTGGTTGGGCTTGGTCTTTGAATCA 1086 | || || || || |||| || ||| ||| |||| ||||||||||||||||| || Sbjct 1026 CGTTCAGGCTTCAGCTGAGCTCCCCAAGGCTCCCATTGGATGGGCTTGGTCTTTGAACCA 1085 Query 1087 GTACCGATCTTTCAGGTGGAAC-TTGACAGCCAGCGCCGCTAGACCTAACCCACAAGGCT 1145 || | ||||||||||||||| || || || || || || || ||||||||||| |||| Sbjct 1086 GTTTAGGTCTTTCAGGTGGAACCTT-ACCGCTAGTGCTGCCAGGCCTAACCCACAGGGCT 1144 Query 1146 CGTACCACTACGGAAAAATTAATATCACTCGCACCATCAAGCTCGTGAACACTCAGGGAA 1205 | ||||| ||||||||||| || ||||| || | ||||||||| || ||| || || | Sbjct 1145 CATACCATTACGGAAAAATCAACATCACCCGTAGCATCAAGCTTGTCAACTCTAAGAGCG 1204 Query 1206 AGGTCGATGGCAA-GCTTAGGTACGCGTTG-AGCGGGGTCTCCCACACCGAC-CCTGAGA 1262 ||| || ||||| | | ||| | ||| | ||| || || || ||| || |||| Sbjct 1205 TGGTTGACGGCAAAG-TCCGGTTTG-GTTTCAACGGTGTATCACATGTTGACACC-GAGA 1261 Query 1263 CACCTCTCAAGCTTGCTGAGTACTTCGGCGTTG-CTGATAAGGTTTTCAAGTACGACACC 1321 | ||| | ||||| |||||||||||| | || | || ||||| ||||||||| | Sbjct 1262 CTCCTTTGAAGCTAGCTGAGTACTTCCA-GATGTCAGAGAAGGTGTTCAAGTACAATGTG 1320 Query 1322 ATCTCGGACAACCCAAATCCTGATCAGA-TCA-AGAACATCAAGATCGAAC--CC-AATG 1376 ||| |||| | || | | | || | ||| || ||| | | | || || |||| Sbjct 1321 ATCAAGGACGAGCC---TGCAGC-CAAAATCACAG--CATTGAC-T-GTACAGCCTAATG 1372 Query 1377 TTCTTAACATCACTCACCGCACCTTCATTGA-AGTCGTGTTCGAGAACCACGAGAGGAGT 1435 |||| ||||||||| ||| ||||| | || | || | |||||||||||||||| ||| Sbjct 1373 TTCTCAACATCACTTTCCGTACCTTTGTAGAGA-TCATTTTCGAGAACCACGAGAAGAGC 1431 Query 1436 GTCCAGTC-TTGGCATTTGGACGGCTATTCCTTCTTCGCTGTAGCGGT-TGAGCCAGGGA 1493 | ||||| || |||||||| || || |||||||||||||| ||| | ||||||||| | Sbjct 1432 ATGCAGTCATTC-CATTTGGATGGTTACTCCTTCTTCGCTGTCGCG-TCTGAGCCAGGAA 1489 Query 1494 CATGGACACCAGAGAAGAGGAAGAACTACAACCTT-CTAGATGCAGTGAGCCGACACACA 1552 |||||||| || ||||| |||||||||||| || || ||||| || ||| ||||||| Sbjct 1490 GGTGGACACCTGAAAAGAGAAAGAACTACAAC-TTGCTCGATGCGGTTAGCAGACACACC 1548 Query 1553 GTCCAGGTCTACCCCAAGTGTTGGGCTGCAATCTTGCTC-ACATTCGACAACTGT-GGAA 1610 || || || |||||||||| |||| | || ||| | || |||||||||||| | || | Sbjct 1549 GTGCAAGTATACCCCAAGTCTTGGTCAGCTATCCT-CTTGACATTCGACAAC-GCCGGTA 1606 Query 1611 TGTGGAACATTAGGTCGGAGAACGCAGAAAG-ACGCTACTTGGGAC-AGCAACTGTACG- 1667 |||||||||| ||||| |||||| || || | | ||| | || | ||||| |||| | Sbjct 1607 TGTGGAACATCAGGTCTGAGAACTTGGAGAGGA-GATACCTAGG-CGAGCAATTGTATGT 1664 Query 1668 CAAGCGT-CTTGTCACCAGAAAAATCTCTCCGGGACGAATACAACAT 1713 || | || || ||||| || ||||| || ||||||| |||||||| Sbjct 1665 CA-GTGTTCTA-TCACCCGAGAAATCGCTAAGGGACGAGTACAACAT 1709 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78542085190 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5