BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55580.1
Length=1742
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924071 jgi|Araly1|924071|scaffold_105352.1 2183 0.0
> Ahg924071 jgi|Araly1|924071|scaffold_105352.1
Length=1381
Score = 2183 bits (1182), Expect = 0.0
Identities = 1318/1384 (95%), Gaps = 7/1384 (1%)
Strand=Plus/Plus
Query 76 ATCTTTTTCTATCTTTTCAAATGCTTACTTCCTTCAAATCCTCTAGCTCCTCCTCCGAAG 135
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATCTTTTTCTATCTTTTCAAATGCTTACTTCCTTCAAATCCTCTAGCTCCTCCTCCGAAG 60
Query 136 ATGCCACCGCTACCACCACCGAGAATCCTCCTCC-TTTGTGCATCGCCTCCTCCTCGGCC 194
|||||||||| ||||||||||| ||||||||||| ||| | | | |||||||| || |||
Sbjct 61 ATGCCACCGCCACCACCACCGATAATCCTCCTCCTTTTTTTC-TGGCCTCCTCTTCCGCC 119
Query 195 GCAACCTCCGCCTCACATCACCTCCGTCGTCTTCTTTTCACCGCTGCGAATTTCGTCTCC 254
|||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 120 GCAACCTCCGCCTCCCATCACCTCCGTCGTCTCCTTTTCACCGCTGCGAATTTCGTCTCC 179
Query 255 CAGTCAAACTTCACCGCCGCTCAAAACTTACTCTCAATCCTCTCCCTTAACTCTTCTCCT 314
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 180 CAGTCAAACTTCACCGCCGCTCAAAACTTACTCTCGATCCTGTCCCTTAACTCTTCTCCT 239
Query 315 CACGGCGACTCCACCGAGCGACTTGTACACCTCTTCACTAAAGCCTTGTCCGTACGAATC 374
||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||| |||
Sbjct 240 CACGGTGACTCCACCGAGCGACTTGTCCACCTCTTCACAAAAGCCTTGTCCGTACGGATC 299
Query 375 AACCGTCAGCAACAAGATCAGACGGCTGAAACGGTTGCCACGTGGACGACGAACGAAATG 434
|||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 300 AACCGTCAACAACAAGATCCGACGGCTGAAACGGTGGCCACGTGGACGACGAACGAAATG 359
Query 435 ACGATGAGTAACTCCACGGTGTTCACGAGCAGTGTATGCAAAGAACAGTTCTTGTTTCGA 494
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 360 ACGATGAGTAACTCCACGGTGTTCACGAGCAGTGTATGCAAAGAACAGTTCTTATTTCGG 419
Query 495 ACCAAGAACAACAATTCTGACTTCGAGTCTTGTTACTATCTTTGGCTAAACCAACTAACG 554
|||||||||||||||||||| ||||| |||||||||||||||||||| || |||||||||
Sbjct 420 ACCAAGAACAACAATTCTGATTTCGAATCTTGTTACTATCTTTGGCTGAATCAACTAACG 479
Query 555 CCGTTTATTCGGTTCGGTCATTTAACGGCGAACCAAGCTATCCTCGACGCGACGGAGACA 614
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 480 CCGTTTATTCGGTTCGGTCATTTAACGGCGAACCAAGCGATCCTTGACGCGACGGAGACA 539
Query 615 AACGATAACGGAGCTCTACATATACTTGATTTAGATATATCACAAGGACTTCAATGGCCT 674
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AACGATAACGGAGCTCTACATATACTTGATTTAGATATATCACAAGGACTTCAATGGCCT 599
Query 675 CCATTGATGCAAGCCCTAGCAGAGAGGTCATCAAACCCTAGCAGTCCACCTCCATCTCTC 734
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 600 CCATTGATGCAAGCCCTAGCAGAGAGGTCATCAAACCCTAACAGTCCACCTCCATCTCTC 659
Query 735 CGCATAACCGGATGCGGTCGAGATGTAACCGGATTAAACCGAACTGGAGACCGGTTAACC 794
||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||
Sbjct 660 CGCATAACCGGATGCGGTCGAGACGTAACCGGATTAAACCGAACCGGAGACAGGTTAACC 719
Query 795 CGGTTCGCTGACTCTTTAGGTCTCCAATTCCAGTTTCACACGCTAGTGATCGTAGAAGAA 854
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 720 CGGTTCGCTGACTCTTTAGGTCTCCAATTTCAGTTTCACACGCTAGTGATCGTAGAAGAA 779
Query 855 GA---TCTCGCCGGACTTTTGCTACAGATCCGATTGTTAGCTCTCTCAGCCGTACAAGGA 911
|| |||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||
Sbjct 780 GAAGATCTCGCCGGACTTTTGTTACAGATCCGATTGTTAGCTCTCTCTGCCGTGCAAGGA 839
Query 912 GAGACCATTGCCGTCAATTGTGTTCACTTCCTCCACAAAATATTTAACGACGATGGAGAT 971
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 840 GAGACCATTGCCGTCAATTGTGTTCACTTCCTCCACAAAATCTTTAACGACGATGGAGAT 899
Query 972 ATGATCGGTCACTTCTTGTCAGCGATCAAGAGCTTAAACTCTAGAATCGTTACAATGGCA 1031
||||| |||||||| |||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 900 ATGATAGGTCACTTTTTGTCAGCGATCAAGAGCTTAAACCCTAGAATCGTGACAATGGCG 959
Query 1032 GAGAGAGAAGCTAATCATGGAGATCACTCGTTCTTGAATAGATTCTCTGAGGCAGTGGAT 1091
||||||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||||
Sbjct 960 GAGAGAGAAGCGAATCACGGAGATCATTCGTTCTTGAATAGATTCTCCGAGGCAGTGGAT 1019
Query 1092 CATTACATGGCGATCTTTGATTCGTTGGAAGCGACGTTGCCGCCAAATAGCCGAGAGAGA 1151
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 CATTACATGGCGATATTTGATTCGTTGGAAGCGACGTTGCCGCCAAATAGCCGAGAGAGA 1079
Query 1152 CTAACCCTAGAGCAACGGTGGTTCGGTAAGGAGATTTTGGATGTTGTGGCGGCGGAAGAG 1211
|||||||||||||||||||||| |||| ||||||||||||||||||||| || |||| |
Sbjct 1080 TTAACCCTAGAGCAACGGTGGTTTGGTATGGAGATTTTGGATGTTGTGGCAGCAGAAGCG 1139
Query 1212 ACGGAGAGAAAGCAAAGACATCGGAGGTTTGAGATTTGGGAAGAGATGATGAAGAGGTTT 1271
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1140 ACGGAGAGAAAGCAAAGACATCGGAGGTTTGAGATTTGGGAAGAGATGATGAAGAGATTT 1199
Query 1272 GGTTTCGTTAACGTTCCTATTGGAAGCTTTGCTTTGTCTCAAGCTAAGCTTCTTCTTAGA 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 GGTTTCGTTAACGTTCCTATTGGAAGCTTTGCTTTGTCTCAAGCTAAGCTTCTTCTTAGA 1259
Query 1332 CTTCATTATCCTTCAGAAGGTTATAATCTTCAGTTCCTTAACAATTCTTTGTTTCTTGGC 1391
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1260 CTCCATTATCCTTCAGAAGGATATAATCTTCAGTTCCTTAACAATTCTTTGTTTCTTGGC 1319
Query 1392 TGGCAAAATCGTCCCCTCTTCTCCGTTTCGTCGTGGAAATGATCCAAAGAGAAGGACaaa 1451
||||||||||||| |||||| || ||||| ||||||||||||||||||||| || | |||
Sbjct 1320 TGGCAAAATCGTCTCCTCTTTTCTGTTTCATCGTGGAAATGATCCAAAGAGGAG-A-AAA 1377
Query 1452 aaaa 1455
||||
Sbjct 1378 AAAA 1381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65362860420
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5