BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55590.1
Length=2095
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474620 jgi|Araly1|474620|fgenesh2_kg.1__4574__AT1G55590.1 3110 0.0
> Ahg474620 jgi|Araly1|474620|fgenesh2_kg.1__4574__AT1G55590.1
Length=1995
Score = 3110 bits (1684), Expect = 0.0
Identities = 1846/1924 (96%), Gaps = 12/1924 (1%)
Strand=Plus/Plus
Query 114 TCATGGAGGAAGTGACGAGATCTGTGTTAGCAGAAGAAATACTGAAGCGTTTAGATCTGG 173
||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||||
Sbjct 79 TCATGGAGGAAGTGACGAGATCTGTGTTAGCGGAGGAGATACTAAAGCGTTTAGATCTGG 138
Query 174 AGAATCTCTGTTCCGTCGCATGCGTTTCCACCACTCTCCGCTCCGCCGTTGTTTCCGGCG 233
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 139 AGAATCTCTGTTCCGTCGCCTGCGTTTCCACCACTCTCCGCTCCGCCGTTGTCTCCGGCG 198
Query 234 TTCTTCCTTCTCTTACCTCCCTCGATCTCTCTGTTTTCTCTCCGGACGATGAAACTCTGA 293
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 199 TTCTACCTTCTCTTACCTCTCTCGATCTCTCTGTTTTCTCTCCGGACGATGAAACTCTGA 258
Query 294 ATCACGTGCTGCGTGGTTGTATCGGACTCAGCAGCTTAACTCTGAATTGTCTCCGCCTTA 353
|||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 259 ATCACGTGTTGCGTGGTTGTATCGGACTTAGTAGCTTAACTCTGAATTGTCTCCGCCTTA 318
Query 354 ACGCTGCTTCTGTGCGTGGA-GTTCTCGGGCCACATCTCCGAGAACTTCACTTGCTCAGG 412
||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 319 ACGCTGCTTCTGTGCGT-GAGGTTCTCGGGCCACATCTCCGAGAGCTTCACTTGCTCAGG 377
Query 413 TGTTCACTTTTATCCTCCACCGTCCTCACTTACATTGGCACCCTCTGCCCAAATCTCCGG 472
||||| ||||||||||||||||||||||||| ||| |||| |||||||||||||||||||
Sbjct 378 TGTTCGCTTTTATCCTCCACCGTCCTCACTTCCATCGGCATCCTCTGCCCAAATCTCCGG 437
Query 473 GTTCTTACTCTGGAAATGGCAGACCTGGATTCTCCCGATGTTTTTCAGTCTAACTTGACG 532
|||||| | |||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 438 GTTCTTTCCCTGGAAATGGCAGACCTGGATTCTCCTGCTGTTTTTCAGTCTAACTTGACG 497
Query 533 CAGATGCTTAACGGGTGTCCTTATCTGGAGTCTCTGCAACTTAATATCCGAGGTATCCTA 592
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 498 CAGATGCTTAACGGGTGTCCGTATCTGGAGTCTCTGCAACTTAATATCCGAGGTATCCTA 557
Query 593 GTAGATGCCACCGCTTTCCAGTCTGTTAGATTCTCCTTGCCAGAAACTCTCAAAGCTCTA 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 558 GTAGATGCCACCGCTTTCCAGTCTGTTAGATTCTCCTTGCCAGAAACTCTCAAAGTTCTA 617
Query 653 AGGTTACAGCCACTTCTTGAGTCTGAGGCAATTCTTCTCATGAACAGATTCAAAGTGACT 712
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 618 AGGTTACAGCCACTTCTTGAGTCTGAGGCAATTCTTCTCATGAACAGATTCAAAGTCACT 677
Query 713 GGAACTTATTTATCTCAGCCTGATTATAATAGTGCCTTGCTATCTCCTTCACCTTCTTTT 772
||||||||||| ||||||||||| | | ||||||||||||| ||||||||||||||||||
Sbjct 678 GGAACTTATTTGTCTCAGCCTGA-T-T-ATAGTGCCTTGCTTTCTCCTTCACCTTCTTTT 734
Query 773 ACTTTGCAAAGCCTGTCTCTTGTCCTGGACTTGATATCTGACAGGCTTATCATAGCTATC 832
|||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 735 ACTTTGCAAACCCTGTCTCTTGTCCTGGACTTGATATCTGACAGGCTAATCATAGCTATC 794
Query 833 ACAGGTTCTCTTCCTCAACTTGTCAAACTGGACCTTGAAGATCGTCCTGAAAAAGAGCCA 892
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 795 ACAGGTTCTCTTCCTCAGCTTGTCAAACTGGACCTTGAAGACCGTCCTGAAAAAGAGCCA 854
Query 893 TTTCCCGACAATGACTTGACTTACACTGGGCTTCAGGCTCTCGGTTTTTGTCAGCAACTC 952
||||| |||| |||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 855 TTTCCTGACAGTGACTTGACTTACACTGGGCTTCAGGCTCTGGGTTATTGTCAGCAACTC 914
Query 953 ACAAGCCTCTCTCTGGTTCGAACTTGTTACAACCGCAAGATATCATTCAAGAGAATAAAC 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 915 ACAAGCCTCTCTCTGGTTCGAACTTGTTACAACCGCAAGATATCATTCAAGAGAATAAAC 974
Query 1013 GATATGGGTATATTTCTTCTCTCCGAGGCTTGCAAGGGTTTAGAGTCTGTGAGACTCGGT 1072
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 975 GATATGGGTATATTTCTTCTTTCCGAGGCTTGCAAGGGTTTAGAGTCAGTGAGACTCGGT 1034
Query 1073 GGGTTCCCAAAAGTCAGCGACGCTGGTTTTGCGTCGCTCCTTCACTCATGTCGGAACTTG 1132
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1035 GGGTTCCCAAAAGTCAGCGACGCTGGTTTTGCATCGCTCCTTCACTCATGTCGGAACTTG 1094
Query 1133 AAAAAGTTTGAAGTTCGAGGTGCCTTCCTGTTGTCTGATTTGGCATTTCATGATGTCACA 1192
|||||||||||| | ||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1095 AAAAAGTTTGAAATACGAGGTGCCTTCCTGTTATCTGATTTGGCATTCCATGACGTCACA 1154
Query 1193 GGGTCTTCCTGTTCTCTTCAAGAGGTCAGACTCTCGACGTGCCCTCTCATAACAAGTGAA 1252
|||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||
Sbjct 1155 GGGTCTTCCTGTTCTCTTCAAGAGGTCAGACTCTTGACGTGCCCTCTCATAACCAGCGAA 1214
Query 1253 GCTGTGAAGAAACTGGGGTTGTGTGGCAATCTTGAGGTGCTCGACTTGGGCAGCTGCAAA 1312
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 GCCGTGAAGAAACTGGGGTTGTGTGGCAATCTTGAGGTGCTCGACTTGGGCAGCTGCAAA 1274
Query 1313 AGTATATCAGATTCTTGCCTCAACTCTGTTTCAGCCCTCAGAAAGTTAACTTCTCTGAAT 1372
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1275 AGTATATCAGATTCTTGCCTCAACTCTGTTTCAGCCCTCAGAAAGTTAACGTCTCTGAAT 1334
Query 1373 CTCGCTGGAGCTGATGTAACCGATAGTGGCATGCTTGCACTTGGTAAGTCAGATGTTCCC 1432
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1335 CTCGCAGGAGCTGATGTAACCGATAGTGGCATGCTTGCACTTGGTAAATCAGATGTTCCC 1394
Query 1433 ATCACGCAACTGTCTCTCCGCGGCTGTAGGAGAGTCAGTGACAGAGGAATATCCT-ATCT 1491
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1395 ATCACGCAACTGTCTCTCCGCGGCTGTAGGAGAGTCAGTGACAGAGGAATAT-CTCATCT 1453
Query 1492 GTTGAACAATGAAGGAACAATCAGCAAAACATTGTCAACACTTGATCTCGGTCATATGCC 1551
|| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1454 ATTAAACAATGAAGGAACAATCAGCAAAACATTATCAACACTTGATCTCGGTCACATGCC 1513
Query 1552 AGGAATCTCAGACAGAGCCATCCACACAATCACACACTGTTGCAAGGCTTTAACAGAGCT 1611
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1514 AGGAATCTCAGACAGAGCCATCCACACAATCACACACTGTTGCAAGGCTTTAACAGAGCT 1573
Query 1612 GAGTATCAGGAGTTGCTTTCACGTAACAGATTCTTCGATAGAGTCCCTGGCTACATGGGA 1671
||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||
Sbjct 1574 GAGTATCAGGAGTTGCTTTCACGTAACAGATTCTTCGATAGAGTCGCTGGCTACAAGGGA 1633
Query 1672 AAGACAAGCAGAGGGAGGAAGCAAACAATTGAGGAAGCTCAATGTCCATAACTGTGTGAG 1731
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1634 AAGACAAGCAGAGGGAGGAAGCAAACAATTGAGGAAGCTCAATGTCCATAACTGTGTGAG 1693
Query 1732 CTTAACTACTGGAGCACTGAGATGGTTAAGCAAGCCGTCTTTTGCGGGTCTGCATTGGCT 1791
|||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1694 CTTAACGACTGGAGCTCTGAGATGGTTAAGCAAGCCGTCTTTCGCGGGTCTGCATTGGCT 1753
Query 1792 CGGAATGGGACAAACACGATTCGCGGGTCGAAAAGAGACGGTTACAGCTATGATTTGTGG 1851
|||| | ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||
Sbjct 1754 CGGATTAGGACAAACACGATTCGCTGGTCGCAAAGAGACGGTTACAGCTACGATTTGTGG 1813
Query 1852 ACAGAGGCCGTGGCTCACGTTGTGCTTCGATGGATGTGAGCTTGGATGCTCTGATGGTTG 1911
||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1814 ACAGAGGCCATGGCTCACGTTGTGCTTTGATGGATGTGAGCTTGGATGCTATGATGGTTG 1873
Query 1912 GGAATTCCACACGCCACAACGCCACTGAAGAACTCA-TTGTCTCACTAGTTCATGTATTG 1970
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1874 GGAATTCCACACGCCACAACGCCACTGAAGAACTCAATTGTCTCACTAGTTCATGTATTG 1933
Query 1971 TATAAAATCGTTCAGAAACATGATTCAGTAGGATGTGT-AATTTTATTTAAACCTT-TTA 2028
|||||||||||||||||||||||||||||||| ||||| ||||| |||||||| || |||
Sbjct 1934 TATAAAATCGTTCAGAAACATGATTCAGTAGGCTGTGTTAATTT-ATTTAAAC-TTCTTA 1991
Query 2029 AAAA 2032
||||
Sbjct 1992 AAAA 1995
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78808716905
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5