BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55600.1
Length=1462
Score E
Sequences producing significant alignments: (Bits) Value
Ahg337643 jgi|Araly1|337643|fgenesh1_pg.C_scaffold_1004208 987 0.0
> Ahg337643 jgi|Araly1|337643|fgenesh1_pg.C_scaffold_1004208
Length=1488
Score = 987 bits (534), Expect = 0.0
Identities = 782/896 (87%), Gaps = 40/896 (4%)
Strand=Plus/Plus
Query 572 GTTGACCCAATTGGAACTCCTTTAGTCACATCCTTTGAATCTGAACTCGTTGACGATGCC 631
||||||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||
Sbjct 625 GTTGACCCAATTGGAACTCCTTTAGTCGCTTCCTTTGAATCTGAACTCGGTGACGATGCC 684
Query 632 CATACCGACATCATCTCCATTGAGGACAGTGAGAGCGAGGATGGAAACAAAGATGATGAC 691
|||| ||||||||| |||||||| |||||||||||||| ||| |||||||||||| |||
Sbjct 685 CATATCGACATCATTTCCATTGAAGACAGTGAGAGCGAAAATGAAAACAAAGATGAAGAC 744
Query 692 GACGAGGACTTCCAATACGAAGACGAAGACGAAGACCAATACGACCAAGATCAAGATGTA 751
|||||||| | ||||| ||| ||||||||||||||| | | | |||||| |||||||||
Sbjct 745 GACGAGGAATACCAATTCGATTACGAAGACGAAGACC-A-A-GGCCAAGACCAAGATGTA 801
Query 752 GATGAAGATGAAGAGGAAGAAAAAGATGAAGACAATGTTGCATTAGATGATCCTCAACCT 811
|| ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 802 TATCTAGATGAAGAGGAAGAGGAAGATGAAGACAATGTTGCATTAGATGATGCTCAACCT 861
Query 812 CCACCTCCAAAGAGAAGGAGA--T-ATGAGGTATCAAAC-ATGATTGGAGCCACAAGAAC 867
| ||| ||||||||||||| | || ||| ||||||| || |||||||||||||||||
Sbjct 862 TCGTCTCGAAAGAGAAGGAGATTTGATCAGGCATCAAACAAT-ATTGGAGCCACAAGAAC 920
Query 868 AAGCAAGACACAAAGGATCATACTTCAGATGGAAAGCGACGAAGACAATCCTAACGATGG 927
|||||||||||||||| |||||||||| ||||||| |||||||||||||||||| |||||
Sbjct 921 AAGCAAGACACAAAGGGTCATACTTCAAATGGAAACCGACGAAGACAATCCTAATGATGG 980
Query 928 TTATCGCTGGAGAAAATACGGTCAGAAAGTCGTCAAAGGAAATCCTAATCCGAGGAGTTA 987
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 981 TTATCGCTGGAGAAAATACGGTCAGAAAGTCGTCAAAGGAAATCCTAATCCGAGGAGTTA 1040
Query 988 CTTCAAGTGCACAAACA-TCGAGTGCAGAGTGAAAAAACATGTGGAGAGAGGAGCAGACA 1046
|| ||| |||||||||| | || |||| |||||| |||||||||||||||||||||||||
Sbjct 1041 CTACAAATGCACAAACAAT-GAATGCAAAGTGAAGAAACATGTGGAGAGAGGAGCAGACA 1099
Query 1047 ATA-TCAAGTTGGTTGTGACTACATACGATGGGATACACAACCATCCTTCACCACCTGCA 1105
| | | ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1100 ACAAT-AAGTTAGTTGTGACTACATACGATGGGATACACAACCATCCTTCACCACCTGCA 1158
Query 1106 CGTAGAAGCAATTCCAGTTCAAGGAACCGGTCTGCAGGGGCAACAATACCTCAAAATCAG 1165
|||||||||||| || |||||||||| ||||||||||| ||||||| |||||||||||
Sbjct 1159 CGTAGAAGCAATACCGGTTCAAGGAATCGGTCTGCAGGTACAACAATGTCTCAAAATCAG 1218
Query 1166 A-ATGATCGAACCAGTCGGTTAGGTAGGGctcctcctactcctactcctcctactcctcc 1224
| |||| |||||||||||||| ||||||||||||| | | | || || | |
Sbjct 1219 GTA-GATCAAACCAGTCGGTTAGCTAGGGCTCCTCCT-C-C-T--TCGTC-T-C------ 1264
Query 1225 tcctTCGTCTTACACACCTGAGGAGATGAGGCCTTTCTCTTCGTTGGCTACAGAAATTGA 1284
| | |||| | || |||||||||||||||||||||| ||||| || || ||||
Sbjct 1265 ------G-C--ACAC-C-TGTGGAGATGAGGCCTTTCTCTTCGATGGCTCCACAAGTTGA 1313
Query 1285 TCTGACAGAGGTTTATATGACCGGAATCTCTATGCTGCCGAATATACCGGTTTACGAGAA 1344
||||||| ||||||||| |||||||||||||| |||||||||| |||| |||||| ||||
Sbjct 1314 TCTGACACAGGTTTATACGACCGGAATCTCTAAGCTGCCGAATGTACCAGTTTACCAGAA 1373
Query 1345 TTCGGGTTTTATGTACCAGAATGATGAACCGACGATGAATGCGATGCCGGATGGTTCAGA 1404
| ||||||||||||||| || ||||||||||| |||||||| ||||||||||||| ||||
Sbjct 1374 TCCGGGTTTTATGTACCGGACTGATGAACCGATGATGAATGTGATGCCGGATGGTGCAGA 1433
Query 1405 TGTGTACGATGGGATCATGGAACGCCTGTATT-TTAAGTTTGGTGTCGACATGTAG 1459
|||||||| |||||||| | | ||||| | || ||||||||||||||||||| |||
Sbjct 1434 TGTGTACGGTGGGATCAAGCATCGCCTAT-TTGTTAAGTTTGGTGTCGACATTTAG 1488
Score = 869 bits (470), Expect = 0.0
Identities = 585/639 (92%), Gaps = 13/639 (2%)
Strand=Plus/Plus
Query 2 ATGAGTGATTTTGATGAAAACTTCATCGAAATGACGTCGTATTGGGCTCCACCATCCAGT 61
|||||||||||||||| ||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1 ATGAGTGATTTTGATGGAAACTTCATAGAAATGACGTCGTATTGGGCTCCACCGTCCAGC 60
Query 62 CCTAGCCCAAGAACGATATTGGCAATGCTGGAGCAAACCGACAATGGTCTGAATCCAATC 121
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||
Sbjct 61 CCTAGCCCAAGAACGATATTGGCGATGCTGGAGCAAACCGACAATGGTATGAATCCGATA 120
Query 122 AGTGAGATCTTCCCTC-AAGAAAGCTTGCCAAGAGATC---ATACTGATCAATCTGGACA 177
|||||||||||||||| || || | | |||||||||| |||||||||| || |||||
Sbjct 121 AGTGAGATCTTCCCTCAAACCAA-CATACCAAGAGATCATGATACTGATCAGTCCGGACA 179
Query 178 AAGATCTGGTCTTCGTGAGAGACTGGCTGCAAGAGTAGGATTCAATCTTCCAACACTCAA 237
|||||||||||| ||||||||| | ||||||||| ||||||||| ||||||||||||| |
Sbjct 180 AAGATCTGGTCTCCGTGAGAGATTAGCTGCAAGAATAGGATTCAGTCTTCCAACACTCGA 239
Query 238 TACAGAAGAAAACATGAGTCCTTTGGATGCATTTTTCAGGAGCTCGAATGTTCCTAATTC 297
||| ||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 240 TAC---AGAAAACATGAGTCCTTTGGATGCATTTTTCAGGAGCTCGACTGTTCCCAATTC 296
Query 298 TCCTGTCGTTGCAATCTCTCCAGGATTCAGTCCATCAGCACTATTGCA-TACTCCCAATA 356
||||||||||||||||||||||||||| || ||||||||||||||||| | |||||||||
Sbjct 297 TCCTGTCGTTGCAATCTCTCCAGGATTTAGCCCATCAGCACTATTGCAAT-CTCCCAATA 355
Query 357 TGGTCAGTGATTCTTCCCAGATTATCCCTCCGTCTTCAGCCACCAATTACGGACCTCTAG 416
||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
Sbjct 356 CGGTCAGTGATTCTTCACAGATTATCCCTCCGTCTCCAGCCACCAATTACGGACCTCCGG 415
Query 417 AGATGGTGGAAACTTCCGGTGAAGACAATGCAGCGATGATGATGTTCAACAACGATCTTC 476
|||||||||||||||||||||||||||||||| || |||| | |||||||| |||||||
Sbjct 416 AGATGGTGGAAACTTCCGGTGAAGACAATGCAATGACGATGGTATTCAACAATGATCTTC 475
Query 477 CTTATCAGCCGTACAATGTTGATCTGCCTTCTCTAGAAGTCTTTGATGATATTGCAACGG 536
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 476 CTTATCAGCCGTACAATGTTGATCTGCCTCCTCTAGAAGTCTTTGATGATATTCCAACGG 535
Query 537 AAGAGTCCTTTTATATCCCATCTTATGAACCTCATGTTGACCCAATTGGAACTCCTTTAG 596
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 536 AAGAGTCCTTTTATATCCCATCTTATGAACCTGATGTTGACCCAATTGGAACTCCTTTAG 595
Query 597 TCACATCCTTTGAATCTGAACTC-GTTGACGATG-CCCA 633
|| | |||||||||||||||||| || |||| || ||||
Sbjct 596 TCGCTTCCTTTGAATCTGAACTCAGT-GACGTTGACCCA 633
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54697591820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5