BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55610.1
Length=3925
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924075 jgi|Araly1|924075|scaffold_105356.1 5433 0.0
Ahg478719 jgi|Araly1|478719|fgenesh2_kg.3__1420__AT3G13380.1 2551 0.0
> Ahg924075 jgi|Araly1|924075|scaffold_105356.1
Length=3562
Score = 5433 bits (2942), Expect = 0.0
Identities = 3349/3545 (94%), Gaps = 29/3545 (1%)
Strand=Plus/Plus
Query 406 CGAACTCTTGCTGTGCCAAATGAAGCAGAGAT-G--G---CTGTTAGTGTTGATACTCTG 459
||||| |||| |||||||||||||||||| || | | ||||||||||||||||||||
Sbjct 2 CGAACACTTGGTGTGCCAAATGAAGCAGAAATGGCTGTCCCTGTTAGTGTTGATACTCTG 61
Query 460 TTTCTTTACGACTTCTCTTGTGATGGGCATTCATGGAAAACACCTAATCAACGATGACTT 519
||||||| ||||||||||| |||||||| ||||||||||||| ||||||||||| |||||
Sbjct 62 TTTCTTTGCGACTTCTCTTATGATGGGCCTTCATGGAAAACAACTAATCAACGAGGACTT 121
Query 520 CAACGAAACTGCTCTGTTATTGGCGTTCAAGCAAAACTCTGTAAAATCTGATCCTAATAA 579
||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |||||
Sbjct 122 CAACGAAACTGCTCTGTTAATGGCGTTCAAGCAAATCTCTGTAAAATCTGATCCAAATAA 181
Query 580 CGTTCTTGGTAACTGGAAATACGAGTCGGGTCGTGGTTCATGCTCTTGGCGAGGGGTTTC 639
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 182 CGTTCTTGGTAACTGGAAATACGAGTCGGGTCGTGGCTCATGCTCTTGGCGAGGCGTTTC 241
Query 640 TTGCTCTGACGATGGTCGAATCGTCGGATTAGATCTCCGAAACAGTGGACTCACCGGAAC 699
||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 242 TTGCTCTGACGATGGTCGAATCGTCGGTTTAGATCTCCGAAACGGCGGACTCACCGGAAC 301
Query 700 CCTAAACCTAGTTAACCTCACGGCGTTGCCTAATCTCCAGAATCTTTACTTGCAAGG-AA 758
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||
Sbjct 302 CCTAAACCTAGTTAACCTCACGGCGTTGCCTAATCTCCAGAATCTTTACCTGCAAGGAAA 361
Query 759 --ATTACT--TC-TCCTCTGGAGGAGATTCGTCT-G----G-TTC-T--GATTGTTATCT 804
||| || || ||||||| ||||||||||||| | | ||| | | |||||||||
Sbjct 362 CTATTTCTCCTCTTCCTCTGCAGGAGATTCGTCTGGCTCTGATTCTTCCGGTTGTTATCT 421
Query 805 TCAAGTTCTGGATTTGTCTTCGAATTCTATTTCAGACTATTCAATGGTGGATTACGTTTT 864
|||||||||||||||||||||||| || || |||||||||||||||||||||||||||||
Sbjct 422 TCAAGTTCTGGATTTGTCTTCGAACTCGATCTCAGACTATTCAATGGTGGATTACGTTTT 481
Query 865 CTCAAAATGTTCGAATCTGGTTTCGGTGAATATCTCCAACAACAAGCTCGTCGGAAAATT 924
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 482 CTCAAAATGTTCGAATCTGGTTTCTGTTAATATCTCCAACAACAAGCTCGTCGGAAAATT 541
Query 925 AGGTTTTGCTCCGTCGTCTTTACAGAGCTTGACGACTGTTGATCTCTCTTACAACATCTT 984
||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||
Sbjct 542 GGGTTTTGCTCCGTCGTCTTTAAAGAGCTTAACGACTGTTGATCTCTCTTACAATATCTT 601
Query 985 ATCAGATAAGATTCCGGAGAGTTTTATTTCAGATTTTCCGGCGTCGTTGAAATATCTCGA 1044
||| || || ||||||||||||||||| |||||||| ||| |||||||||||||||||||
Sbjct 602 ATCGGAGAAAATTCCGGAGAGTTTTATCTCAGATTTGCCGTCGTCGTTGAAATATCTCGA 661
Query 1045 TCTAACTCACAACAACTTATCCGGCGACTTCTCCGATCTCAGTTTCGGTATCTGTGGGAA 1104
||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 662 TCTAACTCACAACAATTTATCCGGCGATTTCTCCGATCTCAGTTTCGGTTTCTGTGGGAA 721
Query 1105 TCTCACCTTCTTCAGTCTATCACAGAACAATCTCTCCGGTGATAAATTCCCAATCACTCT 1164
||||| |||| |||||||||||||||||||| ||||||| |||||||| ||||| |||||
Sbjct 722 TCTCAGCTTCCTCAGTCTATCACAGAACAATATCTCCGGCGATAAATTGCCAATTACTCT 781
Query 1165 ACCAAACTGCAAATTCCTCGAGACATTAAACATCTCTCGGAACAATCTCGCCGGAAAAAT 1224
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 782 ACCTAACTGCAAATTCCTCGAGACGTTAAACATCTCTCGGAACAATCTCGCCGGAAAAAT 841
Query 1225 CCCTAACGGA-GAGTATTGGGGAAGTTTCCAGAATCTGAAACAGCTCTCTCTAGCTCATA 1283
||| |||| || ||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct 842 CCCCGGCGGAGGA-TATTGGGGAAGTTTCCAGAATCTGAAACATCTCTCTCTAGCTCACA 900
Query 1284 ACCGTCTCTCCGGCGAAATCCCACCGGAGCTTTCTCTACTCTGCAAAACCCTAGTGATTC 1343
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 901 ACCGTCTCTCCGGCGAAATCCCACCGGAACTTTCTCTACTCTGCAAAACCCTAGTGGTTC 960
Query 1344 TTGATCTATCCGGAAACACTTTCTCCGGCGAGCTTCCTTCACAGTTCACCGCCTGCGTCT 1403
||||||| ||||||||| |||||||||||||||| ||| ||||||||||||| |||||||
Sbjct 961 TTGATCTCTCCGGAAACGCTTTCTCCGGCGAGCTCCCTCCACAGTTCACCGCATGCGTCT 1020
Query 1404 GGTT-ACAGAATCTTAACCTCGGAAACAACTACCTCTCCGGAGATTTCTTAAACACGGTC 1462
||| | |||| ||||||||||||||||||| ||||||||| |||||||||| ||| |||
Sbjct 1021 CGTTGA-AGAACCTTAACCTCGGAAACAACTTCCTCTCCGGCGATTTCTTAAGCACCGTC 1079
Query 1463 GTGAGTAAAATCACCGGAATCACTTATCTATACGTTGCTTACAACAACATCTCAGGCTCT 1522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 GTGAGTAAAATCACCGGAATCACTTATCTATACGTTGCTTACAACAACATCTCAGGCTCT 1139
Query 1523 GTTCCGATTTCTCTCACAAACTGTTCAAATCTTCGTGTTCTTGATCTAAGCTCAAATGGT 1582
||||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 GTTCCAATTTCTCTGACCAACTGTTCAAATCTTCGTGTTCTTGATCTAAGCTCAAATGGT 1199
Query 1583 TTCACCGGAAATGTACCGTCTGGTTTCTGCTCTCTGCAAAGCTCGCCGGTTCTTGAAAAG 1642
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1200 TTCACCGGAAATGTACCGTCTGGTTTCTGCTCTCTGCAAAGCTCTCCGGTTCTTGAAAAG 1259
Query 1643 ATTCTCATAGCTAACAATTACCTCTCAGGAACAGTTCCTATGGAGCTTGGTAAATGCAAG 1702
|||||||||||||||||||||||||||||||| |||||| |||| |||||||||||||||
Sbjct 1260 ATTCTCATAGCTAACAATTACCTCTCAGGAACTGTTCCTGTGGAACTTGGTAAATGCAAG 1319
Query 1703 AGCTTGAAGACAATTGATCTTAGCTTCAATGAGCTTACTGGTCCGATTCCGAAAGAGATA 1762
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1320 AGCTTGAAGACAATTGATCTCAGCTTCAATGAGCTTACTGGTCCGATTCCGAAAGAGATA 1379
Query 1763 TGGATGTTGCCGAATCTGTCGGATTTGGTTATGTGGGCGAACAATCTCACTGGGACG-AT 1821
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||| | ||
Sbjct 1380 TGGATGTTACCGAATCTGTCGGATTTGGTTATGTGGGCGAACAATCTCACT-GGAAGAAT 1438
Query 1822 CCCGGAAGGTGTTTGTGTTAAAGGAGGAAATTTGGAAACTCTTATCCTCAACAACAATCT 1881
||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1439 CCCAGAAGGTGTTTGTGTTAAAGGTGGAAACTTGGAAACTCTTATCCTCAACAACAATCT 1498
Query 1882 CTTAACCGGTTCAATCCCTGAGTCGATCTCGAGATGCACCAATATGATCTGGATCTCTCT 1941
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 CTTAACCGGTTCAATCCCTAAGTCGATCTCGAGATGCACCAATATGATCTGGATCTCTCT 1558
Query 1942 TTCTAGTAATCGTCTCACCGGGAAAATCCCGAGCGGGATTGGTAATCTTTCCAAGTTAGC 2001
||||||||| ||||| |||||||||||||| || ||||| ||||||||||||||||||||
Sbjct 1559 TTCTAGTAACCGTCTGACCGGGAAAATCCCTAGTGGGATCGGTAATCTTTCCAAGTTAGC 1618
Query 2002 AATCTTGCAGCTAGGGAATAACT-CTCTGTCCGGGAACGTTCCTCGCCAGCTTGGGAACT 2060
|||| ||||||| || || || | || |||||||||| ||||||||| |||| |||||||
Sbjct 1619 AATCCTGCAGCTTGGCAACAATTCCT-TGTCCGGGAATGTTCCTCGCGAGCTCGGGAACT 1677
Query 2061 GCAAGAGTCTGATCTGGCTTGATCTGAACAGCAACAATCTAACCGGGGACCTCCCGGGTG 2120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1678 GCAAGAGTCTGATCTGGCTTGATCTGAACAGCAACAATCTAACCGGGGACCTCCCGGGTG 1737
Query 2121 AGCTAGCTAGCCAAGCCGGGTTAGTAATGCCTGGGAGCGTTTCAGGTAAACAGTTTGCGT 2180
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1738 AGCTAGCGAGCCAAGCCGGGTTAGTAATGCCTGGGAGCGTTTCAGGTAAACAGTTTGCAT 1797
Query 2181 TTGTGAGAAACGAAGGTGGAACAGACTGCAGAGGTGCAGGTGGGTTAGTAGAGTTTGAAG 2240
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1798 TTGTGAGGAACGAAGGTGGAACAGACTGCAGAGGTGCAGGTGGGTTAGTAGAGTTTGAAG 1857
Query 2241 GCATTCGTGCTGAACGATTAGAGCGGCTACCAATGGTTCATTCGTGTCCCGCGACACGGA 2300
|||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1858 GCATTCGTGCAGAACGATTAGAGCGGTTACCAATGGTTCATTCGTGTCCCGCGACACGGA 1917
Query 2301 TATACTCAGGCATGACAATGTACACATTCTCAGCAAATGGAAGCATGATCTATTTCGACA 2360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1918 TATACTCAGGCATGACAATGTACACATTCTCAGCAAATGGAAGCATGATCTACTTCGACA 1977
Query 2361 TCTCGTATAATGCTGTTTCAGGTTTTATACCTCCTGGTTATGGTAACATGGGCTATCTCC 2420
|||| || || || ||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1978 TCTCCTACAACGCAGTTTCGGGTTTTATACCTCCTGGTTATGGTAACATGGGCTATCTCC 2037
Query 2421 AGGTCTTGAATTTGGGACATAACCGGATAACCGGAACCATCCCGGACAGTTTTGGAGGAT 2480
| ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||
Sbjct 2038 AAGTCTTGAATTTGGGACATAACCGGATAACTGGAACCATCCCGGACAATCTTGGAGGAT 2097
Query 2481 TGAAAGCGATTGGTGTTCTCGATCTATCTCACAACAATCTTCAAGGGTACTTACCCGGGT 2540
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 2098 TGAAAGCGATTGGTGTTCTTGATCTATCTCACAACAATCTTCAAGGGTACTTACCCGGAT 2157
Query 2541 CGCTGGGGTCGCTTTCTTTCCTCAGTGATCTTGATGTCTCTAACAACAACCTTACTGGTC 2600
| ||||| ||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 2158 CCCTGGGATCGCTTTCTTTCCTCAGTGATCTCGATGTCTCTAACAACAATCTCACTGGTC 2217
Query 2601 CAATCCCATTTGGAGGTCAGCTTACAACGTTCCCTGTCTCGAGATACGCAAACAACTCAG 2660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2218 CAATCCCATTTGGAGGTCAGCTTACAACGTTCCCTGTCTCGAGATACGCAAACAACTCTG 2277
Query 2661 GCCTCTGTGGTGTTCCTTTGCGTCCCTGCGGTTCAGCTCCTCGACGGCCCATTACCTCCC 2720
|||||||||||||||| |||||||| ||||||||||||||| | ||||||||||| ||||
Sbjct 2278 GCCTCTGTGGTGTTCCCTTGCGTCCGTGCGGTTCAGCTCCTAGGCGGCCCATTACTTCCC 2337
Query 2721 GTATCCATGCCAAGAAGCAAACTGTTGCAACCGCTGTGATCGCTGGAATTGCGTTTTCTT 2780
| ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 2338 GCGTCCATGCCAAGAAGCAAACTGTTGCAACCGCTGTGATTGCTGGAATCGCGTTTTCTT 2397
Query 2781 TCATGTGCTTTGTGATGCTAGTCATGGCGCTTTACAGGGTGAGGAAAGTTCAGAAGAAGG 2840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2398 TCATGTGCTTTGTGATGCTAGTCATGGCGCTTTACAGGGTGAGGAAAGTTCAGAAGAAGG 2457
Query 2841 AACAGAAGAGGGAGAAATACATTGAGAGCCTTCCAACTTCCGGAAGCTGCAGCTGGAAGC 2900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2458 AACAGAAGAGGGAGAAATACATTGAGAGCCTTCCAACTTCCGGAAGCTGCAGCTGGAAAC 2517
Query 2901 TCTCTAGCGTTCCTGAACCGCTTAGCATCAACGTTGCTACATTCGAGAAACCGCTGAGAA 2960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2518 TCTCTAGCGTTCCTGAACCGCTTAGCATCAACGTTGCTACATTCGAGAAACCGCTGAGAA 2577
Query 2961 AACTCACTTTCGCTCATCTTCTTGAAGCTACAAACGGGTTTAGCGCAGAGACTATGGTCG 3020
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2578 AACTCACTTTCGCGCATCTTCTTGAAGCTACAAACGGGTTTAGCGCAGAGACTATGATCG 2637
Query 3021 GGTCTGGTGGGTTTGGAGAAGTATACAAGGCCCAACTCAGAGACGGATCTGTTGTAGCGA 3080
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2638 GATCTGGTGGGTTTGGAGAAGTATACAAGGCTCAACTCAGAGACGGATCTGTTGTAGCGA 2697
Query 3081 TCAAGAAGTTGATTCGAATCACGGGACAAGGCGACAGAGAGTTCATGGCTGAGATGGAAA 3140
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2698 TCAAGAAGTTGATTCGAATCACGGGACAAGGCGATAGAGAGTTCATGGCTGAGATGGAAA 2757
Query 3141 CAATCGGAAAAATCAAACACAGAAACCTTGTTCCACTTTTGGGATATTGCAAGGTTGGTG 3200
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 2758 CAATCGGAAAAATCAAACACAGAAACCTCGTTCCGCTTTTGGGATATTGCAAGGTTGGTG 2817
Query 3201 AAGAGAGGCTTCTTGTCTACGAATACATGAAATGGGGAAGCTTAGAAACCGTTCTTCACG 3260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2818 AAGAGAGGCTTCTTGTCTACGAATACATGAAATGGGGAAGCTTAGAAACCGTTCTTCACG 2877
Query 3261 AGAAATCATCGAAGAAAGGCGGAATATATCTGAATTGGGCCGCAAGGAAGAAGATCGCGA 3320
||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||||
Sbjct 2878 AGAAATCATCGAAGAAAGGCGGAATATTTCTAAATTGGGCCTCAAGGAAGAAGATCGCGA 2937
Query 3321 TTGGAGCTGCAAGAGGGCTAGCGTTTTTGCACCATAGCTGCATTCCTCACATTATCCACA 3380
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2938 TTGGAGCTGCAAGAGGGCTAGCGTTTTTGCACCATAGCTGCATTCCTCACATAATCCACA 2997
Query 3381 GAGACATGAAATCAAGCAATGTTCTTCTGGACGAAGATTTCGAAGCACGTGTTTCGGATT 3440
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 2998 GAGACATGAAATCAAGCAATGTTCTTCTGGACGAAGATTTTGAAGCACGTGTCTCGGATT 3057
Query 3441 TCGGAATGGCGAGGCTGGTCAGCGCTCTAGACACGCATCTGAGCGTGAGCACGCTCGCGG 3500
| ||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 3058 TTGGAATGGCGAGACTGGTCAGCGCTCTAGACACACATCTGAGCGTGAGCACACTCGCGG 3117
Query 3501 GTACACCAGGTTACGTTCCACCGGAATATTACCAGAGTTTCCGGTGTACAGCTAAAGGGG 3560
|||| ||||| |||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 3118 GTACTCCAGGATACGTTCCACCGGAATATTACCAGAGTTTCCGGTGTACGGCCAAAGGGG 3177
Query 3561 ATGTTTACAGCTACGGAGTTATACTTCTTGAGCTTCTGTCTGGTAAGAAACCAATTGATC 3620
||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 3178 ATGTTTACAGCTACGGAGTTATACTTCTTGAGCTTCTCTCTGGTAAGAAACCAATCGATC 3237
Query 3621 CAGGGGAGTTTGGAGAAGATAATAACCTTGTAGGGTGGGCGAAACAGCTATACAGAGAGA 3680
||||||||||||||||||| ||||| || || ||||||||||||||||| || |||||||
Sbjct 3238 CAGGGGAGTTTGGAGAAGACAATAATCTCGTCGGGTGGGCGAAACAGCTCTATAGAGAGA 3297
Query 3681 AAAGAGGAGCTGAGATTCTTGATCCGGAGCTTGTAACCGATAAATCAGGCGATGTTGAGC 3740
||||||||||||||||||||||||| |||||||||| || ||||||||||||||||| |
Sbjct 3298 AAAGAGGAGCTGAGATTCTTGATCCCGAGCTTGTAATTGAGAAATCAGGCGATGTTGAAC 3357
Query 3741 TGTTTCATTATTTGAAGATCGCGTCTCAATGCTTGGATGATCGACCGTTTAAGCGGCCGA 3800
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 3358 TGTTTCATTACTTGAAGATCGCGTCTCAATGCTTGGATGATCGACCGTTCAAGCGGCCGA 3417
Query 3801 CAATGATTCAACTGATGGCAATGTTCAAAGAGATGAAGGCTGATACAGAGGAAGACGAAA 3860
||||||||||| |||||||||||||||||||| | |||||||||||||||||||||||||
Sbjct 3418 CAATGATTCAAGTGATGGCAATGTTCAAAGAGCTTAAGGCTGATACAGAGGAAGACGAAA 3477
Query 3861 GTCTCGATGAGTTTTCGCTCAAGGAAACTCCGTTGGTCGAAGAATCGCGAGATAAGGAGC 3920
|||| |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||
Sbjct 3478 GTCTGGATGAGTTTTCGCTTAAGGAAACTCCATTGGTCGAAGAATCGCGAGATAAAGAGC 3537
Query 3921 CTTAA 3925
|||||
Sbjct 3538 CTTAA 3542
> Ahg478719 jgi|Araly1|478719|fgenesh2_kg.3__1420__AT3G13380.1
Length=4262
Score = 2551 bits (1381), Expect = 0.0
Identities = 2804/3476 (81%), Gaps = 158/3476 (5%)
Strand=Plus/Plus
Query 530 GCTCTGTTATTGGCGTTCAAGCAAAACTCTGTAAAATCTGATCCTAATAACGTTCTTGGT 589
||||||||| |||||||||||| ||| || || || |||||||| ||| |||| |||
Sbjct 689 GCTCTGTTAACAACGTTCAAGCAAATCTCCGTTAAGTCGGATCCTAACAACTTTCTGGGT 748
Query 590 AACTGGAAATACGAGTCGGGTCGTGGTTCATGCTCTTGGCGAGGGGTTTCTTGCTCTGA- 648
||||||||||||| ||||||||||| |||| ||||||||||| || ||||| ||| |
Sbjct 749 AACTGGAAATACGGGTCGGGTCGTGACCCATGTTCTTGGCGAGGCGTCTCTTGTTCT-AG 807
Query 649 CGATGGTCGAATCGTCGGA-TTAGATCTCCGAAACAGTGGACTCACCGGAACCCTAAACC 707
||||||| || || | ||| || ||||| |||||| |||| || |||||||||||||| |
Sbjct 808 CGATGGTAGAGTCATTGGACTT-GATCTACGAAACGGTGGCCTTACCGGAACCCTAAATC 866
Query 708 T-AGTTAACCTCACGGCGTTGCCTAATCTCCAGAATCTTTACTTGCAAGGAAATTACTTC 766
| | ||| |||||||||||| | ||||||| ||||||||| ||||||||||| |||||
Sbjct 867 TCA-ATAATCTCACGGCGTTGTCGAATCTCCGGAATCTTTATTTGCAAGGAAACAACTTC 925
Query 767 TCCTCTGGAGGAGATTCGTCTGG---TTCTGATTGTT----A---TCT-TC-AAGTTCTG 814
|| || || || || || ||||| |||| || || | ||| || | | ||||
Sbjct 926 TCGTC-GG-GG-GACTCCTCTGGTACTTCTTCTTCTTCAGGATGTTCTCTCGAGGCTCTG 982
Query 815 GATTTGTCTTCGAATTCTATTTCAGACTATTCAATGGTGGATTACGTTTTCTCAAAATGT 874
||| | ||||| || || ||| | |||| |||||||||||| ||||||||||| | |||
Sbjct 983 GATATATCTTCAAACTCGATTACGGACTCTTCAATGGTGGAATACGTTTTCTCTAGCTGT 1042
Query 875 TCGAATCTGGTTTCGGTGAATATCTC-CAACAACAAGCTCGTCGGAAAATT-AGGTTTTG 932
| ||||||||||| || ||| |||| | |||||||||||| ||||||||| | || ||
Sbjct 1043 TTGAATCTGGTTTTTGTCAATTTCTCGC-ACAACAAGCTCGCCGGAAAATTAAAGTCTT- 1100
Query 933 CTCCGTCGTC--TTTAC-AGAGCTTGACGACTGTTGATCTCTCTTACAA-CATCTTATCA 988
|||||| | | | || |||| | || || ||||||||||| |||| | ||| ||
Sbjct 1101 CTCCGTTGACGAGTAACAAGAGAATCACCACCGTTGATCTCTCCAACAATC-GCTTCTCC 1159
Query 989 GATAAGATTCCGGAGAGTTTTATTTCAGATTTTCCGGCGTCGT-TGAAATATC-TCGATC 1046
||| |||| ||||||| ||| | | ||||| ||| |||| | ||||| | | |||||
Sbjct 1160 GATGAGATACCGGAGACTTTCGTCGCCGATTTCCCGACGTC-TCTGAAACA-CATCGATT 1217
Query 1047 TAACTC-ACAACAACTT-ATCCGGCGACTTCTC-CGATCTCAGTTTCGGTATCTGTGGGA 1103
|| | | | ||| || | ||||||||||||| || ||||||||| ||| |||||||||
Sbjct 1218 TATC-CGGTAGCAATTTCA-CCGGCGACTTCTCTCG-TCTCAGTTTTGGTCTCTGTGGGA 1274
Query 1104 ATCTCACCTTCTTCAGTC-TATCACAGAACAATC-TCTCCGGTGATAAATTCCCAATCAC 1161
| |||||| | ||||| | ||||||||||| | | ||||||| || | ||| || | |
Sbjct 1275 ACCTCACCGTATTCAG-CTTATCACAGAAC-AGCATCTCCGGCGACAGATTTCCGGTTAG 1332
Query 1162 TCTAC-CAAACTGCAAATTCCTCGAGACATTAAACATCTCTCGGAACAATCTCGCCGGAA 1220
||| | |||| || || ||||||| || |||||| |||||||||||| |||||||||||
Sbjct 1333 TCT-CTCAAATTGTAAGCTCCTCGAAACGTTAAACCTCTCTCGGAACAGTCTCGCCGGAA 1391
Query 1221 A-AATCCCTAACGGA-GAGTATTGGGGAAGTTTCCAGAATCTGAAACAGCTCTCTCTAGC 1278
| | |||| | || || |||||||||| ||| ||||| ||||| |||||||| || ||
Sbjct 1392 ATATTCCC-GGC-GATGAATATTGGGGAAATTTTCAGAACCTGAAGCAGCTCTCCCTCGC 1449
Query 1279 TCATAACCGTCT-CTCCGGCGAAATCCCACCGGAGCTTTCTCTACTCTG-CAAAACCCTA 1336
|| |||| | | |||||| || || ||||||||||||||||| || || | ||| |||
Sbjct 1450 ACACAACC-TTTACTCCGGTGAGATTCCACCGGAGCTTTCTCTGCTATGTC-GAACTCTA 1507
Query 1337 GTGATTCTTGATCTATCCGGAAACACTTTCTCCGG-CGAGCTTCCTTC-A-CAGTTCACC 1393
| | |||| ||||| ||||| |||| | || |||| | ||||||| | | || ||||||
Sbjct 1508 GAGGTTCTCGATCTCTCCGGCAACAGTCTCACCGGTC-AGCTTCC-GCAATCA-TTCACC 1564
Query 1394 GCCTGCGTCTGGTTACAGAA-TCTTAACCTCGGAAACAACTACCTCTCCGGAGATTTCTT 1452
|||| | || |||| || || || || ||||||||| | |||||||| ||||||||
Sbjct 1565 TCCTGTGGCTCACTACA-AAGCCTAAATCTTGGAAACAACAAGCTCTCCGGCGATTTCTT 1623
Query 1453 AAACACGGTCGTGAGTAAAATCACCGGAATCACTTATCTATACGTT--GCTTACAACAAC 1510
|| ||| |||||||||||| || | |||||| | |||| ||| || ||| |||||||
Sbjct 1624 AAGCACCGTCGTGAGTAAACTCTCTAGAATCAGTAATCTTTAC-TTACCCTT-CAACAAC 1681
Query 1511 ATCTCAGGCTCTGTTCCGATTTCTCTCACAAACTGTTCAAATCTTCGTGTTCTTGATCTA 1570
||||| || |||||||||| ||| ||||| |||||| | ||||| || |||||||||||
Sbjct 1682 ATCTCCGGTTCTGTTCCGAGTTCGCTCACCAACTGTACTAATCTCCGAGTTCTTGATCTG 1741
Query 1571 AGCTCAAATG-GTTTCACCGGA-AATGTACCGTCTGGTTTCTGCTCTCTGCAAAGCTCGC 1628
|||||||| | | ||||| ||| || ||||| ||||| ||||||||||| ||||| ||
Sbjct 1742 AGCTCAAACGAG-TTCACTGGAGAA-GTACCATCTGGCTTCTGCTCTCTTCAAAGATCTT 1799
Query 1629 CGGTTCTTGAAAAGATT-CTCATAGCTAACAATTACCTCTCAGGAACAGTTCCTATGGAG 1687
||||||| |||||| || || || || |||||||||||||||||||| |||||| | |||
Sbjct 1800 CGGTTCTGGAAAAG-TTCCTTATTGCCAACAATTACCTCTCAGGAACTGTTCCTGTTGAG 1858
Query 1688 CTTGGTAAATGCAAGAGCTTGAAGACAATTGATCTTAGCTTCAATGAGCTTACTGGTCCG 1747
||||||||||| |||||||||||||||||||||||||||||||||| || |||||| |
Sbjct 1859 CTTGGTAAATGTAAGAGCTTGAAGACAATTGATCTTAGCTTCAATGCTCTCACTGGTTCA 1918
Query 1748 ATTCCGAAAG-AGATATGGATGTTGCCGAATCTGTCGGATTTGGTTATGTGGGCGAACAA 1806
||||| |||| ||||||||| ||||||||||| || ||||| |||||||||||||||||
Sbjct 1919 ATTCC-AAAGGAGATATGGACATTGCCGAATCTCTCTGATTTAGTTATGTGGGCGAACAA 1977
Query 1807 TCTCACTGG-GACGA-TCCCGGA-AGGTGTTTGTGTTAAAGGAGGAAATTTGGAAACTCT 1863
|||||| || | || | | ||| || |||||||| | |||||||| |||||||| |
Sbjct 1978 TCTCACCGGTG--GAATTCTGGAGAGCA-TTTGTGTTGATGGAGGAAACTTGGAAACG-T 2033
Query 1864 TA-TCCTCAACAACAATCTCTTAACCGGTTCAATCCCTGAGTCGATCTCGAGATGCACCA 1922
|| || | ||||||||||||||||||||||| | || || || ||||| | ||||||||
Sbjct 2034 TAATCTTAAACAACAATCTCTTAACCGGTTCTGTTCCAGAATCAATCTCCAAATGCACCA 2093
Query 1923 ATATGATCTGGATCTCTCTTTCTAGTAATC-GTCTCACCGG-GAAAATCCCGAGCGGGAT 1980
| ||| | |||||||| ||||||||||| | | || ||||| |||| ||||| | |||
Sbjct 2094 ACATGCTTTGGATCTCCCTTTCTAGTAACCTG-CTTACCGGCGAAA-TCCCG-GTAGGAA 2150
Query 1981 T-GGTAATCTTTCCAAGTTAGCAAT-CTTGCAGCTAGGGAATAACTCTCTGTCCGGGAAC 2038
| || || ||| |||||||| || || ||| || ||||| || ||| || | ||||||
Sbjct 2151 TCGGAAAGCTTGAGAAGTTAGCGATTCT-GCAACTTGGGAACAATTCTTTGACTGGGAAC 2209
Query 2039 GTTCCTCGCCAGCTTGGGAACTGCAAGAGTCTGATCTGGCTTGATCTGAACAGCAACAAT 2098
|||| || ||||||| |||||||||| || |||||||||||||| |||||||| |||
Sbjct 2210 ATTCCACGTGAGCTTGGAAACTGCAAGAACCTTATCTGGCTTGATCTTAACAGCAATAAT 2269
Query 2099 CTAACCGGGGACCTCCCGGGTGAGCTAGCTAGCCAAGCCGGGTTAGTAATGCCTGGGAGC 2158
||||| ||| | ||||| ||||| || || ||||| ||||| | |||||||| || |||
Sbjct 2270 CTAACTGGGAATCTCCCAGGTGAACTTGCAAGCCAGGCCGGACTGGTAATGCCCGGAAGC 2329
Query 2159 GTTTCAGGTAAACAGTTTGCGTTTGTGAGAAACGAAGGTGGAACAGACTGCAGAGGTGCA 2218
|| || ||||||||||||||||||||||| ||||||||||| || || ||||||||||||
Sbjct 2330 GTCTCTGGTAAACAGTTTGCGTTTGTGAGGAACGAAGGTGGGACGGATTGCAGAGGTGCA 2389
Query 2219 GGTGGGTTAG-TAGAGTTTGAAGGCATTCGTGCTGAACGATTAGAGCGGCTACCAATGGT 2277
|| ||||| | | |||||||||||||||||||| || || ||||||| | || |||||
Sbjct 2390 GG-GGGTTTGGTTGAGTTTGAAGGCATTCGTGCAGAGCGGTTAGAGCATTTTCCGATGGT 2448
Query 2278 TCATTCGTGTCCCGCGACACGGATATACTCAGGCATGACAATGTACACATTCTCAGCAAA 2337
|||||| |||||| ||| |||||||||||||||||||| ||||||| ||||| | ||
Sbjct 2449 TCATTCATGTCCCAAGACTCGGATATACTCAGGCATGACCATGTACATGTTCTCCGGGAA 2508
Query 2338 TGGAAGCATGATCTATTTCGACATCTCGTATAATGCTGTTTCAGGTTTTATACCTCCTGG 2397
|| ||||||||||| || ||| |||| || ||||| |||||||||| ||| ||| |||
Sbjct 2509 CGGGAGCATGATCTACTTGGACCTCTCCTACAATGCGGTTTCAGGTTCTATTCCTT-TGG 2567
Query 2398 -TTATGGTAACA-TGGGCTATCTCCAGGTCTTGAATTTGGGACATAACCGGATAACCGGA 2455
||||||| || |||| || || ||||||||||||||||||||||||| | |||| |||
Sbjct 2568 GTTATGGTG-CAATGGGATACCTTCAGGTCTTGAATTTGGGACATAACCTGTTAACTGGA 2626
Query 2456 ACCATCCCGGACAGTTTTGGAGGATTGAAAGCGATTGGTGTTCTCGATCTATCTCACAAC 2515
||||| ||||| || ||||||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 2627 ACCATACCGGATAGCTTTGGAGGATTGAAAGCAATTGGAGTTCTTGATCTATCTCACAAC 2686
Query 2516 AATCTTCAAGGGTACTTACCCGGGTCGCT-GG-GGTCGCTTTCTTTCCTCAGTGATCTT- 2572
||||| ||||| | |||||| || || || || || | || | |||| | || || |||
Sbjct 2687 AATCTCCAAGGATTCTTACCTGGATCACTAGGAGGACTCTCT-TTTC-TAAGCGA-CTTA 2743
Query 2573 GATGTCTCTAACAACAACCTTACTGGTCCAATCCCATTTGGAGGTCAGCTTACAACGTTC 2632
|| |||||||||||||| || || || ||||||||||| ||||| || ||||| ||||||
Sbjct 2744 GACGTCTCTAACAACAATCTAACCGGACCAATCCCATTCGGAGGCCAACTTACGACGTTC 2803
Query 2633 CCTGTCTCGAGATACGCAAACAACTCAGGCCTCTGTGGTGTTCCTTTGCGTCCCTGCGGT 2692
|| ||| | |||||||| || ||||| |||||||| || |||||| ||| ||||| |
Sbjct 2804 CCAGTCACAAGATACGCCAATAACTCTGGCCTCTGCGGGGTTCCTCTGCCACCCTGTAGC 2863
Query 2693 TC-AGCTCCTCGACGGCCCATTACCTCCCGTA-TCCATGCC-AAGAAGCAAA-CTGTTGC 2748
|| || ||| || | |||| | || | | || | || || || || | | ||||
Sbjct 2864 TCTAGTTCC-CG--G-CCCACGAGATCTCATGCTC-AC-CCTAAAAAACAGAGCA-TTGC 2916
Query 2749 AACCGCTG-TGATCGCTGGAATTGCGTTTTCTTTCATGTGCT-TTGTGATGCT-AGTCAT 2805
|| | | ||||| ||||||||| ||||||||||||||| | |||||||||| | | ||
Sbjct 2917 GACTGG-GATGATCACTGGAATTGTGTTTTCTTTCATGTG-TATTGTGATGCTTATT-AT 2973
Query 2806 GGCGCTTTACAGGGTGAGGAAAGTTCAGAAGAAGGAACAGA-AGAGGGAGAAATACATTG 2864
|||||||||||| || ||||| ||||||||||||||| | | |||| ||||| ||||| |
Sbjct 2974 GGCGCTTTACAGAGTAAGGAAGGTTCAGAAGAAGGAAAA-ACAGAGAGAGAAGTACATCG 3032
Query 2865 AGAGCCTTCCAACTTCCGGAAGCTGCAGCTGGAAGCTCTCTAGCGTTCCTGAACCGCTT- 2923
|||||||||| || ||||| ||| |||||||||||||||||||||||| ||||||| ||
Sbjct 3033 AGAGCCTTCCGACCTCCGGTAGCAGCAGCTGGAAGCTCTCTAGCGTTCATGAACCG-TTG 3091
Query 2924 AGCATCAACGTTGCTACATTCGAGAAACCGCTGAGAAAACTCACTTTCGCTCATCTTCTT 2983
||||||||||| || || || ||||| |||||| ||||||| |||||||| || ||| ||
Sbjct 3092 AGCATCAACGTCGCAACCTTTGAGAAGCCGCTGCGAAAACTTACTTTCGCACACCTT-TT 3150
Query 2984 -GAAGCTACAAACGGGTTTAGCGCAGAGACTATGGTCGGGTCTGGTGGGTTTGGAGAAGT 3042
||||| ||||||||||||||||| || | |||| | || || || ||||||||||| ||
Sbjct 3151 AGAAGCCACAAACGGGTTTAGCGCTGATAGTATGATTGGATCAGGCGGGTTTGGAGATGT 3210
Query 3043 ATACAAGGCCCAACTCAGA-GACGGATCTGTTGTAGCGATCAAGAAGTTGATTCGAA-TC 3100
|||||||| |||||| | || |||||||||||||||||||||||| |||||| || ||
Sbjct 3211 CTACAAGGCTCAACTC-GCTGATGGATCTGTTGTAGCGATCAAGAAGCTGATTC-AAGTC 3268
Query 3101 ACGGGACAAGGCGACAGAGAGTTCATGGCTGAGATGGAAACAATCGGAAAAATCAAACA- 3159
||||||||||| || |||||||||||||| ||||||||||| || ||||||||||||||
Sbjct 3269 ACGGGACAAGGTGATAGAGAGTTCATGGCAGAGATGGAAACGATTGGAAAAATCAAACAT 3328
Query 3160 CAGAAACCTTGTT-CCACTT-TTGGGATATTGCAAGGTTGGTGAAGAGAGGCTTCTTGTC 3217
| |||| ||| | || ||| |||| |||||||||| ||||||||||| | |||||||||
Sbjct 3329 C-GAAAT-TTGGTGCCTCTTCTTGG-ATATTGCAAGATTGGTGAAGAGCGACTTCTTGTC 3385
Query 3218 TACGAATACATGAAATGGGGAAGCTTAGAAACCGTTCTTCACGAGAAATCATCGAAGAAA 3277
||||| |||||||||| ||||||||||| |||||||| ||||| ||| | | |||||
Sbjct 3386 TACGAGTACATGAAATACGGAAGCTTAGAGACCGTTCTACACGA-AAAG-ACC-AAGAAG 3442
Query 3278 GGCGGAATATATCT-GAATTGGGCCGCAAGGAAGAAGATCGCGATTGGAGCTGCAAGAGG 3336
|| ||||| | ||| || |||| |||| ||||||||||| || ||||||||||| | ||
Sbjct 3443 GGTGGAATCTTTCTTGA-TTGGTCCGCGAGGAAGAAGATTGCAATTGGAGCTGCGCGTGG 3501
Query 3337 GCTAGCGTTTT-TGCACCATAGCTGCATTCCTCACATTATCCACAGAGACATGAAATCAA 3395
|||||| ||| |||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 3502 GCTAGC-TTTCCTGCACCATAGCTGCATTCCTCATATAATCCACAGAGACATGAAGTCAA 3560
Query 3396 GCAATGTTCTTCTGGACGAAGATTTCGAAGCACGTGTTTCGGATTTCGGAATGGCGAGGC 3455
|||| |||||||| ||| ||||||| | ||| ||||| || ||||| || ||||| ||||
Sbjct 3561 GCAACGTTCTTCTAGACCAAGATTTTGTAGCCCGTGTCTCAGATTTTGGTATGGCAAGGC 3620
Query 3456 TGGTCAGCGCTCTAGACACGCATCT-GAGCGTGAGCACGCTCGCGGGTACACCAGGTTAC 3514
|||| |||||||| ||||| || || ||| || ||||| ||||||||||| || || ||
Sbjct 3621 TGGTGAGCGCTCTGGACACACA-CTTGAGTGTTAGCACTCTCGCGGGTACTCCCGGATAT 3679
Query 3515 GTTCCACCGGAATATTACCAGAGTTTCCGGTGTACAGCTAAAGGGGATGTTTACAGCTAC 3574
|||||||| || |||||||||||||||||||| || || ||||| ||||| |||||||||
Sbjct 3680 GTTCCACCAGAGTATTACCAGAGTTTCCGGTGCACTGCAAAAGGAGATGTATACAGCTAC 3739
Query 3575 GGAGTTATACTTCTTGAGCTTCTGTCTGGTAAGAAACCAATTGATCCAGGGGAGTTTGGA 3634
|||||||||||||| ||||| || || || |||||||| || ||||||| ||||||||
Sbjct 3740 GGAGTTATACTTCTGGAGCTCCTCTCAGGCAAGAAACCGATCGATCCAGAAGAGTTTGGT 3799
Query 3635 GAAGATAATAACCTTGTAGGG-TGGGCGAAACAGCTATACAGAGAGAAAAGAGGAGCTGA 3693
||||| || |||||||| ||| ||||| ||||| || ||||| ||||| |||||||| ||
Sbjct 3800 GAAGACAACAACCTTGT-GGGATGGGCTAAACAACTCTACAGGGAGAAGAGAGGAGCCGA 3858
Query 3694 GATTCTTGATCCGGAGCTT-GTAACCGATAAATCAGGCGATGTTGAGCTGTTTCATTATT 3752
||||||||| || ||| || || || || ||||| |||||||||||||| ||||||| |
Sbjct 3859 GATTCTTGACCCAGAG-TTAGTGACAGACAAATCTGGCGATGTTGAGCTACTTCATTACT 3917
Query 3753 TGAAGATCGCGTCTCAATGCTTGGATGATCGACCGTTTAAGCGGCCGACAATGATTCAAC 3812
||||||| ||||||||||| ||||| ||||| |||||||| |||| || |||||||||
Sbjct 3918 TGAAGATTGCGTCTCAATGTTTGGACGATCGGCCGTTTAAAAGGCCAACTATGATTCAAG 3977
Query 3813 TGATGGCA-ATGTTCAAAGAGAT-GA--AGG-CTGATACAGAGGAAGACGAAAGTCTCGA 3867
| ||| | |||||||||||| | | ||| | ||||||||| || ||| ||||| ||
Sbjct 3978 TCATGA-AGATGTTCAAAGAGCTCGTTCAGGTC-GATACAGAG-AA--CGATAGTCTGGA 4032
Query 3868 TGAGTTTTCGCTCAAGGAAACTCCGTTGGTCGAAGAATCGCGAGATAAGGAGCCTT 3923
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 4033 TGAGTTTTCGCTCAAGGAAACGCCGTTGGTCGAAGAATCACGAGATAAGGAGCCTT 4088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 148348419554
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5