BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55620.2
Length=2749
Score E
Sequences producing significant alignments: (Bits) Value
Ahg474623 jgi|Araly1|474623|fgenesh2_kg.1__4577__AT1G55620.2 4222 0.0
> Ahg474623 jgi|Araly1|474623|fgenesh2_kg.1__4577__AT1G55620.2
Length=2713
Score = 4222 bits (2286), Expect = 0.0
Identities = 2570/2707 (95%), Gaps = 20/2707 (1%)
Strand=Plus/Plus
Query 43 ACTCGGAATCTGAATCCGATCAAATCTGAACAACACCGGCGACGAATCTCTGCGGCGTAG 102
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 18 ACTCGGAATCTGAATCCGATCAAATCTGAACAGCACCGGCGACGAATCTCTGCGGCGTAG 77
Query 103 ATTTAGATTTCATCCCGGGGAGACTTAAATTGATGCAGTAGTGAAATATCACGGCGAAGG 162
||||| ||||| |||||| ||||| ||||||||||| | ||||| ||||||||||||||
Sbjct 78 ATTTATATTTCGTCCCGGAGAGAC-GAAATTGATGCAATCGTGAACTATCACGGCGAAGG 136
Query 163 GATGGTTTGTTGGTAAAAGAGCCAATTGAAATCAG-TTATGTCATCGGGAGGAGCCGGAG 221
|||| | ||||||| || |||||||||||||||| | ||||||||||||||||||||||
Sbjct 137 GATGATGTGTTGGT--AACAGCCAATTGAAATCAGATAATGTCATCGGGAGGAGCCGGAG 194
Query 222 AGTATAACGAAGACAGACATCTGTTACGATCCACCGACGGAGATGAAGTCGGCATTGGCG 281
|||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 195 AGTACAACGAAGACAGACATCTGTTACGATCCACCGACGGCGATGAAGTAGGCATTGGCG 254
Query 282 GAGGAGAGGGTGATCTAGATGTTGAATCTCAGTCTCCGGCTATCAGAAGTGGAGCTGGAG 341
||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 255 GAGGAGATGGTGATCTCGATGTTGAATCTCAGTCTCCGGCTGTCAGAAGTGGAGCTGGAG 314
Query 342 GAGTTAGGGATCTGTTCAAGCATATAGATCGGAGATTTTCTCTTTCCGGTCGTCGTTTAA 401
|||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 315 GAGTTAGGGATCTGTTCATGCATCTAGATCGGAGATTTTCTCTTTCCGGTCGTCGTTTAA 374
Query 402 GTTTTAAACGGATGGAGAATATCAGAGTCGATAGAGAGCGCCATAATCCTTCTTCTTCTT 461
| |||||||||||||||||||||||||| ||||||||||| |||||||| ||||| ||||
Sbjct 375 GCTTTAAACGGATGGAGAATATCAGAGTGGATAGAGAGCGACATAATCCGTCTTCCTCTT 434
Query 462 CAGCGTTTTCGGCTGCTGGAGAAGAAGATGGTGGTGGTATCAGTAATTTACATAGCGTTG 521
| ||||| ||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 435 CCGCGTTATCGGCTGCTGGAGTAGAAGATGGTGGTGGTATCAGTAATTTACATAGCGGCG 494
Query 522 ATGATCGAAATGACGAGTACGGGTTTGATGAAGAAGTTCTCGGAGATAGTGCTCCACCTG 581
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 495 ATGATCGAAATGACGAGTACGGGTTTGATGAAGAAGTGCTCGGAGATAGTGCTCCACCTG 554
Query 582 AGTGGGCTCTGCTTCTCATTGGCTGTCTTATTGGTGTTGCCGCTGGAATTTGTGTCGCCG 641
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 555 AGTGGGCTCTGCTTCTCATCGGATGTCTTATCGGTGTTGCCGCTGGAATTTGTGTCGCCG 614
Query 642 GCTTCAATAAAGGGGTTCATGTCATTCATGAGTGGGCATGGGCTGGTACTCCCAACGAAG 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 615 GCTTCAATAAAGGGGTTCATGTCATTCATGAGTGGGCATGGGCTGGTACTCCCAACGAAG 674
Query 702 GTGCTGCATGGCTTCGTCTACAGAGACTAGCTGATACTTGGCATCGGATTCTTCTAATTC 761
|||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||
Sbjct 675 GTGCTGCATGGCTTCGTCTACAGAGACTTGCTGATACTTGGCACCGAATTCTTCTAATTC 734
Query 762 CGGTCACTGGAGGTGTTATAGTAGGAATGATGCACGGTTTGCTTGAGATCTTAGACCAAA 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CGGTCACTGGAGGTGTTATAGTAGGAATGATGCACGGTTTGCTTGAGATCTTAGACCAAA 794
Query 822 TAAGGCAATCTAATTCTTCTCAAAGACAAGGACTAGATTTTCTTGCTGGTATTTATCCAG 881
| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 795 TCAGGCAATCTACTTCTTCTCAAAGACAAGGACTAGATTTTCTTGCTGGTATTTATCCAG 854
Query 882 TGATAAAGGCCATCCAAGCTGCTGTGACCCTTGGTACAGGATGTTCACTGGGTCCTGAGG 941
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 855 TGATAAAGGCCATCCAAGCTGCTGTGACCCTTGGTACAGGATGTTCACTGGGGCCTGAGG 914
Query 942 GACCTAGCGTTGACATTGGAAAATCATGTGCCAACGGTTTTGCACTCATGATGGAAAACA 1001
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 915 GACCTAGCGTCGACATTGGAAAGTCATGTGCCAACGGTTTTGCACTCATGATGGAAAACA 974
Query 1002 ACAGAGAAAGAAGAATAGCTCTCACCGCAGCTGGTGCGGCTTCTGGGATTGCATCTGGTT 1061
|||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 975 ACAGAGAAAGGAGAATAGCTCTCACTGCAGCTGGTGCGGCTTCCGGGATTGCATCTGGTT 1034
Query 1062 TCAATGCAGCAGTGGCGGGTTGTTTCTTTGCTATTGAAACTGTTTTAAGACCTTTACGTG 1121
|||||||||||||||||||||||||||||||||| || || |||||||||||| |||| |
Sbjct 1035 TCAATGCAGCAGTGGCGGGTTGTTTCTTTGCTATCGAGACCGTTTTAAGACCTCTACGGG 1094
Query 1122 CCGAGAACTCGCCTCCATTTACCACTGCAATGATAATATTGGCCTCTGTTATATCATCGA 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1095 CCGAGAACTCGCCTCCATTTACCACTGCAATGATAATATTGGCCTCTGTTATATCATCGA 1154
Query 1182 CTGTGTCAAATGCTCTGCTTGGGACTCAATCAGCTTTCACAGTTCCCTCATACGACCTGA 1241
| ||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |
Sbjct 1155 CCGTGTCAAATGCACTGCTTGGGACTCAATCCGCTTTCACAGTTCCATCATACGACCTTA 1214
Query 1242 AGTCTGCTGCAGAGCTCCCTCTGTACCTGATACTAGGCATGCTTTGCGGTGCTGTCAGTG 1301
|||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
Sbjct 1215 AGTCAGCTGCAGAGCTCCCTCTGTACCTGATATTAGGCATGCTTTGCGGTGCTGTCAGCG 1274
Query 1302 TTGTTTTTTCTCGGCTCGTCACGTGGTTTACCAAGTCATTCGATTTCATCAAAGACAAAT 1361
||||||||||||| |||||||| |||||||||||||| ||||| ||||||||||||||||
Sbjct 1275 TTGTTTTTTCTCGTCTCGTCACATGGTTTACCAAGTCGTTCGACTTCATCAAAGACAAAT 1334
Query 1362 TTGGTCTTCCTGCTATCGTGTGCCCTGCACTAGGTGGTTTAGGAGCTGGAATTATTGCTC 1421
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1335 TTGGTCTTCCTGCTATTGTGTGCCCTGCACTAGGTGGTTTAGGAGCTGGAATTATTGCTC 1394
Query 1422 TCAAGTACCCTGGAATTTTGTATTGGGGGTTTACAAATGTTGAGGAAATCCTGCATACTG 1481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1395 TCAAGTACCCTGGAATTTTGTATTGGGGGTTTACAAATGTTGAGGAAATCCTGCATACTG 1454
Query 1482 GAAAAAGTGCTTCAGCTCCTGGAATCTGGTTATTAGCTCAGTTAGCCGCTGCAAAAGTTG 1541
||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||
Sbjct 1455 GAAAAAGTGCTTCAGCTCCTGGAATCTGGTTGTTAGCTCAGTTAGCCGCAGCCAAAGTTG 1514
Query 1542 TGGCTACAGCTCTTTGCAAAGGCTCTGGGCTTGTAGGTGGTCTATATGCACCAAGTTTGA 1601
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1515 TGGCTACAGCTCTTTGCAAAGGCTCTGGGCTTGTAGGCGGTCTATATGCACCAAGTTTGA 1574
Query 1602 TGATTGGTGCTGCTGTTGGTGCTGTATTTGGGGGTTCGGCTGCTGAGATTATTAACAGAG 1661
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1575 TGATTGGTGCTGCTGTTGGTGCTGTATTTGGTGGTTCGGCTGCTGAGATTATTAACAGAG 1634
Query 1662 CTATTCCTGGTAATGCTGCTGTTGCTCAACCACAAGCTTATGCTCTGGTTGGAATGGCAG 1721
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1635 CTATTCCTGGTAATGCTGCTGTTGCTCAACCACAAGCTTACGCTCTGGTTGGAATGGCAG 1694
Query 1722 CGACACTAGCTTCAATGTGCTCTGTTCCCTTAACATCAGTATTACTGCTGTTCGAGCTAA 1781
|||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1695 CGACTCTAGCTTCCATGTGCTCTGTTCCTTTAACATCAGTATTACTGCTGTTCGAGCTAA 1754
Query 1782 CGAAAGATTATAGAATTTTGCTTCCCCTCATGGGAGCAGTTGGTTTAGCAATATGGGTTC 1841
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1755 CGAAAGATTATAGAATTTTGCTTCCCCTCATGGGAGCTGTTGGTTTAGCAATATGGGTTC 1814
Query 1842 CCTCTGTGGCAAACCAAGGCAAAGAGAGTGATTCATCTGAAGGTCGTAGCACAGGAAGAG 1901
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1815 CCTCTGTGGCAAACCAAGGCAAAGAGAGTGATTCGTCTGAAGGTCGCAGCACAGGAAGAG 1874
Query 1902 GATACTCTTCTCTTTCACCTTCCGAACGTAAAACCGAAGGAGTCTGGAGACATACGGATA 1961
||||||||||| ||||||||||||| |||||||||||||| ||||||||||| || |||
Sbjct 1875 GATACTCTTCTATTTCACCTTCCGACCGTAAAACCGAAGGCGTCTGGAGACACACTGATG 1934
Query 1962 ATGCTGACTCCCTTGAGCTTACCGTCATAGAGAACCCTGACCATAATTCCTTTTTGGATG 2021
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1935 ATGCTGACTCCCTTGAGCTTACTGTCATAGAGAACCCTGACCATAATTCCTTTTTGGATG 1994
Query 2022 AAGAGACTATTCTGGAAGACTTAAAAGTTA-TGCGGGTTATGTCAAAGAACTATGTGAAA 2080
|||| |||||||||||||||||||| | || |||||||||||||||||||||| ||||||
Sbjct 1995 AAGAAACTATTCTGGAAGACTTAAA-GATAATGCGGGTTATGTCAAAGAACTACGTGAAA 2053
Query 2081 GTTTCTTCAGGAACAACTCTAAGAGAAGCAAGAAACATCCTTAAAGAGAGCCACCAAAAC 2140
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2054 GTTTCTTCAGGAACAACTCTAAGAGAAGCAAGAAACATCCTTAAAGACAGCCACCAAAAC 2113
Query 2141 TGCATTATGGTGGTCGATGACGATGATTTTCTAGCTGGAATCCTAACACACGGTGACATA 2200
||| ||||||||||||||||||||||||||||||| ||||| ||||||||||| || ||
Sbjct 2114 TGCCTTATGGTGGTCGATGACGATGATTTTCTAGCCGGAATTCTAACACACGGCGATATC 2173
Query 2201 AGAAGATACTTGTCCAATAACGCCTCTACAATCTTAGATGAGAATACATGTCCGGTTTCT 2260
||||||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 2174 AGAAGATTCTTGTCAAATAACGTCTCTACAATCTTTGATGAGAATACATGTCCGGTTTCT 2233
Query 2261 TCTGTATGTACTAAGAAAATAAGCTATC-GAGGCCAAGAACGCGGTTTACTTACTTGTTA 2319
||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct 2234 TCTGTGTGTACTAAGAAAATAAGCTA-CAGAGGCCAAGAACGCGGTTTACTTACTTGTTA 2292
Query 2320 TCCAGACGCCACAGTTGGTGTAGCCAAGGAGTTGATGGAGGCTAGAGGTGTAAAGCAATT 2379
||||||||| || ||||||||||| ||||||||||||||||| |||||||| ||||||||
Sbjct 2293 TCCAGACGCGACGGTTGGTGTAGCGAAGGAGTTGATGGAGGCAAGAGGTGTGAAGCAATT 2352
Query 2380 ACCTGTTGTAAAACGAGGTGAAGTAATTCACAAAGGGAAACGAAGGAAACTGCTTGGCCT 2439
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 2353 ACCTGTTGTAAAACGAGGTGAAGTAATTCACAAAGGAAAACGGAGGAAACTGCTTGGCCT 2412
Query 2440 CCTTCATTACGATTCCATTTGGACTTTTCTCAGAGATGAAATGAGTCGTAGGAGATCGAT 2499
||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2413 CCTTCATTATGACTCCATTTGGAGTTTTCTCAGAGATGAAATGAGTCGTAGGAGATCGAT 2472
Query 2500 CAACGACCGGAGAAAAGACAAAGAGGTTGGTACAAATGGGCATTGATTGGGTTTGTGCCC 2559
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2473 CAACGACCGGAGAAAAGACAAAGAGGTTGGTGCAAATGGGCATTGATTGGGTTTGTGCCC 2532
Query 2560 ATTTTGGTATAGCttttt-ttttatatttttcttcttttaaatttttGAGGTC-AAATTG 2617
|||||||||||||||||| |||| ||| || |||||||| ||||||||||||| ||||||
Sbjct 2533 ATTTTGGTATAGCTTTTTATTTT-TATATT-CTTCTTTTTAATTTTTGAGGTCCAAATTG 2590
Query 2618 ATTAGAACGAGGCAAA--CAAGATCGTAAAAATAATATTAATATATACCTCT--ATTAGT 2673
|||||||||||| ||| ||||||| ||||| |||||||||||||||||||| |||| |
Sbjct 2591 ATTAGAACGAGGAAAAAACAAGATCCTAAAAGTAATATTAATATATACCTCTGTATTAAT 2650
Query 2674 TTTGAAAATATTGCTTCTCACCAAAGTAACAGACTCATCTCATATAATCAAAAGAAATCT 2733
||||||||||||| |||||||||||| ||||||||| ||| || ||||||||||||||
Sbjct 2651 TTTGAAAATATTG-TTCTCACCAAAG---CAGACTCATATCACATCATCAAAAGAAATCT 2706
Query 2734 AGTGAAA 2740
|||||||
Sbjct 2707 AGTGAAA 2713
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103719737135
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5