BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55630.1
Length=1890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924077 jgi|Araly1|924077|scaffold_105358.1 2279 0.0
Ahg939040 jgi|Araly1|939040|scaffold_503231.1 850 0.0
> Ahg924077 jgi|Araly1|924077|scaffold_105358.1
Length=1477
Score = 2279 bits (1234), Expect = 0.0
Identities = 1388/1464 (95%), Gaps = 3/1464 (0%)
Strand=Plus/Plus
Query 295 ATTTTGGATTAAGCTCAAATATGAACTCTGTAATTCATTATAGCACTAGTGTTGCGGTTC 354
|||||||||||| |||||||||||||||| || ||||||||||||| ||||||| ||||
Sbjct 1 ATTTTGGATTAAACTCAAATATGAACTCTTTAGTTCATTATAGCACAAGTGTTGTAGTTC 60
Query 355 GTAAAGCTTCTCGCTTTCTCTTCACATCGAGGAAATTTTGCAATGGTAGCATCGGTGGTG 414
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 GTAAAGCTTCTCGCTTTCTCTTCACATCGAGGAGATTTTGCAATGGTAGCATCGGTGGTG 120
Query 415 ATGTAACCGATAACGGGACCGAAGAGCCCTTGAAGATAACTTGGGAATCTTCGGAGATGG 474
||||||||||||| ||||||||||||||||||||||| | ||||||||||| |||||||
Sbjct 121 ATGTAACCGATAATGGGACCGAAGAGCCCTTGAAGATTTCCTGGGAATCTTCTGAGATGG 180
Query 475 ATTGTGAGTTTGACCAGGAGGAAAATGGTGAGAAAATCTCTGTTAGAAAAAGGTTTATGG 534
|||||| ||||||| |||||||| |||||||||||||||||||||||| |||||||||||
Sbjct 181 ATTGTGGGTTTGACGAGGAGGAACATGGTGAGAAAATCTCTGTTAGAAGAAGGTTTATGG 240
Query 535 AGAGTACTAAACTCAGTGCGTCTCGGGTTCTCGATACGTTACAGCAAGATTGTCCCGGTT 594
||||| |||| ||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 AGAGTGCTAAGCTCGGTGCGTCTCGGGTTCTCGATACTTTACAGCAAGATTGTCCCGGTT 300
Query 595 TCAATACGAAATCAGCTTTAGATGAATTGAATGTTTCAATCTCAGGGCTATTAGTGAGAG 654
||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 301 TCAATACGAAATCAGCTTTAGATGATTTGAACGTTACAATCTCAGGGCTATTAGTGAGAG 360
Query 655 AGGTTCTTGTTGGGATCTTAAGAACTCTGAGCTTTGATAATAAAACAAGGTGTGCTAAGC 714
|||||||||||||||||||||| || ||||||| ||||||||| ||||||||||||||||
Sbjct 361 AGGTTCTTGTTGGGATCTTAAGGACACTGAGCTATGATAATAAGACAAGGTGTGCTAAGC 420
Query 715 TCGCTTACAAGTTCTTTGTGTGGTGTGGTGGACAAGAGAATTTCAGGCACACTGCGAATT 774
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 TAGCTTACAAGTTCTTTGTGTGGTGTGGTGGACAAGAGAATTTCAGGCACACTGCGAATT 480
Query 775 GTTATCATTTACTTATGAAGATATTTGCTGAATGTGGTGAGTATAAAGCCATGTGCAGGC 834
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 481 GTTATCATTTACTTATGAAGATATTTGCAGAGTGTGGTGAGTATAAAGCCATGTGCAGGC 540
Query 835 TAATTGATGAGATGATCAAAGACGGTTATCCAACAACAGCATGCACGTTTAATCTATTGA 894
||||||| |||||||||||||||||||||||||| || ||||||||||||||||| ||||
Sbjct 541 TAATTGACGAGATGATCAAAGACGGTTATCCAACGACGGCATGCACGTTTAATCTGTTGA 600
Query 895 TATGTACTTGCGGGGAAGCAGGCCTTGCTAGAGATGTTGTTGAGCAGTTCATCAAGTCGA 954
||||||||||||| ||||||||||||||||||||||| || ||||| |||||||||||||
Sbjct 601 TATGTACTTGCGGTGAAGCAGGCCTTGCTAGAGATGTCGTGGAGCAATTCATCAAGTCGA 660
Query 955 AAACTTTCAATTACCGACCTTATAAACACTCTTACAATGCCATTTTGCATTCTTTGCTAG 1014
|||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||
Sbjct 661 AAACTTTCAATTACCGACCTTACAAACACTCTTATAACGCCATTTTGCATTCTTTGCTAG 720
Query 1015 GGGTGAAACAGTACAAGCTGATTGATTGGGTTTACGAGCAGATGTTAGAAGACGGGTTTA 1074
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GGGTGAAACAGTACAAGCTGATTGATTGGGTTTACGAGCAGATGTTAGAAGACGGGTTTT 780
Query 1075 CGCCAGATGTTCTGACTTACAACATTGTAATGTTTGCAAACTTTAGGTTAGGGAAAACAG 1134
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 CGCCGGATGTTCTGACTTACAACATTGTAATGTTTGCAAACTTTAGGTTAGGGAAAACAG 840
Query 1135 ATCGGCTTTATAGATTGCTAGATGAAATGGTTAAAGACGGGTTTTCTCCTGATTTGTATA 1194
|||||||||| ||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 841 ATCGGCTTTACAGATTACTCGATGAAATGGTTAAAGACGGGTTTTCTCCTGATTTATATA 900
Query 1195 CATACAACATCCTCCTCCATCATCTAGCAACAGGAAACAAGCCTCTCGCTGCTCTTAACC 1254
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 901 CATACAACATCCTCCTCCACCATCTAGCAACAGGAAACAAGCCTCTCGCTGCTCTTAACC 960
Query 1255 TTCTGAA-TCATATGAGGGAAGTAGGAGTTGAGCCCGGTGTCATCCATTTCACTACTCTG 1313
| || || ||||||||||||||| ||||| ||||||||||| ||||||||||||||||||
Sbjct 961 TACT-AACTCATATGAGGGAAGTTGGAGTAGAGCCCGGTGTGATCCATTTCACTACTCTG 1019
Query 1314 ATAGACGGGCTGAGCCGAGCTGGGAAGTTAGAAGCTTGCAAATACTTTATGGACGAAACG 1373
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1020 ATAGACGGGCTGAGCCGAGCTGGGAAGTTAGAAGCTTGCAAATACTTTATGGACGAAATG 1079
Query 1374 GTGAAAGTTGGATGCACGCCAGATGTTGTTTGCTACACTGTTATGATCACAGGATATATA 1433
|||||||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 1080 GTGAAAGTTGGATGCAAGCCGGATGTTGTTTGCTACACTGTTATGATCACAGGTTATATA 1139
Query 1434 TCAGGTGGGGAGCTCGAGAAAGCCGAAGAAATGTTCAAAGAAATGACAGAAAAGGGGCAA 1493
||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||
Sbjct 1140 TCAGGTGGGGAGCTCGAGAAAGCTGAAGAAATGTTTAAAGAGATGACAGAAAAGGGTCAA 1199
Query 1494 CTCCCGAATGTTTTCACATACAATTCGATGATCCGCGGGTTTTGTATGGCGGGGAAATTC 1553
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1200 CTCCCTAATGTTTTCACATACAACTCGATGATCCGCGGGTTTTGTATGGCGGGGAAATTC 1259
Query 1554 AAAGAGGCGTGCGCGTTGCTCAAGGAAATGGAGTCAAGAGGGTGTAACCCTAATTTTGTA 1613
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1260 AAAGAGGCGTGCTCGTTGCTCAAGGAAATGGAGTCAAGAGGGTGTAACCCTAATTTCGTG 1319
Query 1614 GTGTATAGTACACTGGTGAACAATCTAAAAAACGCGGGGAAGGTTTTAGAGGCTCATGAA 1673
|||||||||| ||||||||||||||||| |||||| |||||||||||||||||||| ||
Sbjct 1320 GTGTATAGTATACTGGTGAACAATCTAAGAAACGCAGGGAAGGTTTTAGAGGCTCACGAG 1379
Query 1674 GTAGTGAAGGACATGGTAGAGAAAGGGCATTATGTTCATCTTATTTCAAAGTTGAAAAAA 1733
||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 GTAGTAAAAGACATGGTGGAGAAAGGGCATTATGTTCATCTTATTTCAAAGTTGAAAAAA 1439
Query 1734 TATAGAAGATCTTAGttttt-ttt 1756
|||||||||||||||||||| |||
Sbjct 1440 TATAGAAGATCTTAGTTTTTGTTT 1463
> Ahg939040 jgi|Araly1|939040|scaffold_503231.1
Length=1470
Score = 850 bits (460), Expect = 0.0
Identities = 1008/1266 (80%), Gaps = 64/1266 (5%)
Strand=Plus/Plus
Query 510 ATCTCTGTTAGAAAAAGGTTTATGGAGAGTACTAAACTCAGTGCGTCTCGGGTTCTCGAT 569
||||||||| | | |||||| |||||||| | || | |||||||||| ||||||||
Sbjct 214 ATCTCTGTTCGGAGTAGGTTTTTGGAGAGTGCCAAGGTTGGTGCGTCTCGTGTTCTCGAG 273
Query 570 ACGTTACAGCAAGATTG--TCCCGG-TTTCAATACGAAA-TCAGCTTTAGATGAATTGAA 625
|| || |||| ||| || | | || ||| ||||| ||| |||| |||||||||||||||
Sbjct 274 ACATTGCAGCTAGA-TGAAT-CTGGATTT-AATAC-AAAGTCAGTTTTAGATGAATTGAA 329
Query 626 TGTTTCAATCTCAGGGCTAT-TAGTGAGAGAGGTTCTTGTTGGGATCTTAA-GAACTCTG 683
|||| | |||||||||| | ||||||| ||||||||||| |||||||||| ||||| ||
Sbjct 330 TGTTAGAGTCTCAGGGCT-TCTAGTGAGGGAGGTTCTTGTAGGGATCTTAAGGAACT-TG 387
Query 684 AGCTT-TGATAATAAAACAAGGTGTGCTAAG-CTCGCTTACAAG-TTCTTTGTGTGGTGT 740
|| || ||||||||| || || ||||| || | ||||| || ||||| ||||||| |
Sbjct 388 AG-TTATGATAATAAGACCAGATGTGC-GAGATTAGCTTA-TAGATTCTTCGTGTGGTCT 444
Query 741 GGTGGACAAGAGAATTTCAGGCACACTGCGAATTGTTATCATTTACTTATGAAGATATTT 800
|| | |||||| |||||||||||| | ||||| ||||||| | |||||||||||||||
Sbjct 445 GGAGAACAAGATTGTTTCAGGCACACAGTGAATTCTTATCATCTGCTTATGAAGATATTT 504
Query 801 GCTGAATGTGGTGAGTATAAAGCCATGTGCAGGCTAATTGATGAGAT-GATCAAAGACGG 859
|| |||||||| |||||||| || ||||| || || |||||||||| | || |||||||
Sbjct 505 GCAGAATGTGGAGAGTATAAGGCAATGTGGAGATTAGTTGATGAGATGGTTC-AAGACGG 563
Query 860 -TTATCCAACAACAGC-ATGCACGTTTAATCTATTGATATGTACTTGCGGGGAAGCAGGC 917
|| || |||||||| | | ||||||||||| ||||| |||| | |||| ||||||||
Sbjct 564 ATT-CCCGACAACAGCGA-GGACGTTTAATCTGTTGATTTGTAGTCGCGGTGAAGCAGG- 620
Query 918 CTT-GCTAGAGATGTTGTTGAGCAGTTCATCAAGTCGAAAACTTTCAATTACCGACCTTA 976
|| || | | | | ||||| |||||| || ||||| || |||||||||||||||||||
Sbjct 621 TTTGGCGAAACAAGCTGTTGTGCAGTTTATGAAGTCCAAGACTTTCAATTACCGACCTT- 679
Query 977 T-AAACACTCTTACAATGCCATTTTGCATTCTTTGCTAGGGGTGAA-ACAGTACAAGCTG 1034
| ||||||||||| || || |||||| ||||||||||||| || || |||||| || ||
Sbjct 680 TCAAACACTCTTATAACGCAATTTTGAATTCTTTGCTAGGTGT-AAGACAGTATAAATTG 738
Query 1035 ATTGATTGGGTTTACGAGCAGATGTTAGAAGACGGGTTTACGCCAGATGTTCTGACTTAC 1094
|| || ||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 739 ATCGAGTGGGTTTACGAGCAGATGTTAGAAGACGGGTTTTCGCCTGATGTTCTGACTTAT 798
Query 1095 AACATTGTAATGTTTG-CAAACTTTAGGTTAGGGAAAACAGATCGGCTTT-ATAGATTGC 1152
|||||| | ||| | |||||| |||||||||||||| ||| | || | || ||
Sbjct 799 AACATTCTCTTGTG-GACAAACTATAGGTTAGGGAAAATGGATAGA-TTCGACAGGCTGT 856
Query 1153 TAGATGAAATGGTTAAAGACGGGTTTTCTCCTGATTTGTATACATACAACATCCTCCTCC 1212
| ||||| |||| | ||| ||||| ||||| ||||| || ||||||||||| | || |
Sbjct 857 TTGATGAGATGGCTCGAGATGGGTTGTCTCCGGATTTCTACACATACAACATTTTGCTGC 916
Query 1213 ATCATCTAGC--AACAGGAAACAAGCCTCTCGCTGCTCTTA--ACCTTCTGAATCATATG 1268
| ||| | | || |||||| || || ||||||||||||| || || ||| ||||||
Sbjct 917 A-CATTTTGGGGAA-AGGAAATAAACCGCTCGCTGCTCTTACTACGTT--GAACCATATG 972
Query 1269 AGGGAAGTAGGAGTTGAGCCCG-GTGTCATCCATTTCACTACTCTGATAGACGGGCTGAG 1327
| |||||||||| | || || | ||||| |||||| ||||||| |||||||||| |||||
Sbjct 973 AAGGAAGTAGGAATCGA-CCTGAGTGTCCTCCATTACACTACTTTGATAGACGGTCTGAG 1031
Query 1328 CCGAGCTGGGAAGTTAGAAGCTTGCAAATACTTTATGGACGAAACGGTGAAAGTTGGATG 1387
||| || ||||| || || || ||||| |||||| | || |||| |||||||| ||| ||
Sbjct 1032 CCGTGCAGGGAATTTGGAGGCGTGCAAGTACTTTCTAGATGAAATGGTGAAAGCTGGGTG 1091
Query 1388 CACG-CCAGATGTTGTTTGCTACACTGTTATGATCACAGGATATATA-TCAGGTGGGGAG 1445
|| | || ||||||||||| ||||| || ||||| ||||| ||| | | | ||| |||
Sbjct 1092 CA-GACCGGATGTTGTTTGTTACACCGTCATGATAACAGGGTATGTTGT-ATCTGGAGAG 1149
Query 1446 CTCGAGAAAGCCGAAGAA-ATGTTCAAAGAAATGACAGAA-AAGGGGCAACTCCCGAATG 1503
|||||||| || ||| | ||||| | ||| ||||| | | ||||| ||| | |||||||
Sbjct 1150 CTCGAGAAGGCA-AAGGAGATGTTTAGAGAGATGACGGTAGAAGGG-CAATTACCGAATG 1207
Query 1504 TTTTCACATACAATTCGATGATCCGCGGGTTTTGTATGGCGGG-GAAATTCAAAGAGGCG 1562
| ||||||||||| |||||||| |||||||| ||||||||||| || |||| |||||||
Sbjct 1208 TATTCACATACAACTCGATGATTCGCGGGTTGTGTATGGCGGGAGAG-TTCAGAGAGGCG 1266
Query 1563 TGC-GCGTTGCTCAAGGAAATGGAGTCAAGAGGGTGTAACCCTAATTTTGTAGTGTATAG 1621
|| | |||||| ||||||||||| || |||||||||||||| ||||| |||||||||||
Sbjct 1267 TGTTG-GTTGCTAAAGGAAATGGAATCTAGAGGGTGTAACCCGAATTTCGTAGTGTATAG 1325
Query 1622 TACACTGGTGAACAATCTAAAAAACGCGGGGAAGGTTTTAGAGGCTCATGAAG-TAGTGA 1680
||||||||| | | || ||| ||| || |||||| ||| |||||||| ||| || | |
Sbjct 1326 TACACTGGTTAGCTATTTAAGAAAGGCAGGGAAGCTTTCAGAGGCTCGC-AAGGTAAT-A 1383
Query 1681 AG-GACATGGTAGA-GAAAGGGCATTATGTTCATCTTATTTC-AAAGTTGAAAAAATATA 1737
|| || ||||| || |||||| || ||||||||| ||| ||| |||| || |||||||
Sbjct 1384 AGAGAGATGGT-GAAGAAAGGACACTATGTTCAT-TTAGTTCCAAAGATGTTGAAATATA 1441
Query 1738 GAAGAT 1743
| ||||
Sbjct 1442 GGAGAT 1447
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71000216680
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5