BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55640.1
Length=564
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924078 jgi|Araly1|924078|scaffold_105359.1 688 0.0
> Ahg924078 jgi|Araly1|924078|scaffold_105359.1
Length=604
Score = 688 bits (372), Expect = 0.0
Identities = 503/567 (89%), Gaps = 6/567 (1%)
Strand=Plus/Plus
Query 1 ATGTTAGCACCGGGGGAGAGTGTTCTGATCCCGGCGGAGGAGATAAGTCTCTCCGCT-GG 59
||||||||||||| ||||| |||||||||| || ||||||||||||||| ||| | | ||
Sbjct 21 ATGTTAGCACCGGCGGAGACTGTTCTGATCACGACGGAGGAGATAAGTCCCTCTG-TCGG 79
Query 60 TGATGTTATCTCCTTGTCGGTGCACAATCTAATAGCTTCTGTTTCTAGCTACCGTCCATG 119
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 80 TGATGTTATCTCCATGTCGGTGCACAATCTAATAGCTTCTGTTTCTAGCTACCGTCCATG 139
Query 120 GTGGTCAGAATTTCTAGCATTCGGTTCCATCGACCGTCCAAGCTCTTTCTCCCCCGCTGT 179
|||||| ||||| ||||||||||||||||| |||||||||| |||||||||| ||||||
Sbjct 140 GTGGTCGGAATTCCTAGCATTCGGTTCCATTGACCGTCCAACCTCTTTCTCCTCCGCTGC 199
Query 180 TTCGCGCGTTAAACTTAACCTTCACCACTTTGCGGTTAACTACGTACTTTTAACCGCTGC 239
||||| | |||||| |||||| |||||||| |||||||| | ||||||||||| ||
Sbjct 200 CTCGCGTGCTAAACTCAACCTTTGCCACTTTGTTGTTAACTATTTTCTTTTAACCGCAGC 259
Query 240 TTCCATCACACTCTTCTTGATCGGTGATCCGATGGCTCTTGTCACGGTTGCATCCTTTGT 299
|| |||||||||||||||||||||||||| |||||||| ||||| |||| |||||||
Sbjct 260 TTTGGTCACACTCTTCTTGATCGGTGATCCGGTGGCTCTTCTCACGCTTGCCTCCTTTGC 319
Query 300 AGCCATGTGGCTACTCCTATATTTCTATAGAGACCATCCGTTGGTCTTGTACGGTCGACA 359
| ||||||| | |||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 320 GGTCATGTGGATGCTCCTATATTGCTTTAGAGACCATCCGTTGGTCTTGTACGGTCGACA 379
Query 360 TATTAGCGACCGTGTTATCGTCTTTGGGTTGATTC-TTGGCTCGCTTTGGGCATTGTGGT 418
|||||| |||||| | || || ||||| |||| | ||||||||||||||||||||||||
Sbjct 380 TATTAGTGACCGTATAATTGTAGTTGGGCTGAT-CATTGGCTCGCTTTGGGCATTGTGGT 438
Query 419 TCATTAA-TAGCCTCCAATGCCTGATTCTTGGCGTCGTTACAAGTGTCTTGCTTTGTTTG 477
|||| || | |||||||| ||||| ||||||| | ||||||||||||||||||||||||
Sbjct 439 TCATAAACT-GCCTCCAAAGCCTGGTTCTTGGTATTGTTACAAGTGTCTTGCTTTGTTTG 497
Query 478 GTCCACGCAATCATACGGAATTCAGACGACCTCTTTGTACAAGAGAAAGATGTTGTTGTT 537
|||||||| || |||| |||||||||||||||||||||||||| |||||||||||| ||
Sbjct 498 GTCCACGCCGTCGTACGAAATTCAGACGACCTCTTTGTACAAGAAAAAGATGTTGTTATT 557
Query 538 CCTTCCAATTTCCTTCATTGGAGCTGA 564
|||||||||||||||||||||||||||
Sbjct 558 CCTTCCAATTTCCTTCATTGGAGCTGA 584
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20604018060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5