BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT1G55675.1

Length=870
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg338115 jgi|Araly1|338115|fgenesh1_pg.C_scaffold_2000214           148    5e-35


> Ahg338115 jgi|Araly1|338115|fgenesh1_pg.C_scaffold_2000214
Length=507

 Score =  148 bits (80),  Expect = 5e-35
 Identities = 132/157 (84%), Gaps = 3/157 (2%)
 Strand=Plus/Plus

Query  488  TCTGTGCCGCTGTGTTTTTGGAATTCGGGAATCAATTGTCTTTTGGAAGATCCTTT-CTT  546
            ||| ||||| ||| | || ||| ||||||||||||||| |||| ||| |||  ||| |||
Sbjct  225  TCTATGCCGATGT-TCTTCGGAGTTCGGGAATCAATTGCCTTTGGGAGGAT-GTTTCCTT  282

Query  547  TGCAAATTTGATGATGATGTTTGTTGGGATTCTCTAATTAAAAACCGATGGACTTCTGTG  606
            |||| ||| ||||||||   ||| ||||||||||||||||||||||||||||||||| ||
Sbjct  283  TGCAGATTCGATGATGAAAATTGGTGGGATTCTCTAATTAAAAACCGATGGACTTCTTTG  342

Query  607  TTTAAAGTTCTAGCTGTTTCCGGTGGCTTTGGAGTTT  643
             || ||| ||| || ||||||||||| ||||||||||
Sbjct  343  CTTGAAGCTCTGGCGGTTTCCGGTGGTTTTGGAGTTT  379



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32213864865


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5