BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT1G55675.1 Length=870 Score E Sequences producing significant alignments: (Bits) Value Ahg338115 jgi|Araly1|338115|fgenesh1_pg.C_scaffold_2000214 148 5e-35 > Ahg338115 jgi|Araly1|338115|fgenesh1_pg.C_scaffold_2000214 Length=507 Score = 148 bits (80), Expect = 5e-35 Identities = 132/157 (84%), Gaps = 3/157 (2%) Strand=Plus/Plus Query 488 TCTGTGCCGCTGTGTTTTTGGAATTCGGGAATCAATTGTCTTTTGGAAGATCCTTT-CTT 546 ||| ||||| ||| | || ||| ||||||||||||||| |||| ||| ||| ||| ||| Sbjct 225 TCTATGCCGATGT-TCTTCGGAGTTCGGGAATCAATTGCCTTTGGGAGGAT-GTTTCCTT 282 Query 547 TGCAAATTTGATGATGATGTTTGTTGGGATTCTCTAATTAAAAACCGATGGACTTCTGTG 606 |||| ||| |||||||| ||| ||||||||||||||||||||||||||||||||| || Sbjct 283 TGCAGATTCGATGATGAAAATTGGTGGGATTCTCTAATTAAAAACCGATGGACTTCTTTG 342 Query 607 TTTAAAGTTCTAGCTGTTTCCGGTGGCTTTGGAGTTT 643 || ||| ||| || ||||||||||| |||||||||| Sbjct 343 CTTGAAGCTCTGGCGGTTTCCGGTGGTTTTGGAGTTT 379 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 32213864865 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5