BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT1G55680.1
Length=1960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg924080 jgi|Araly1|924080|scaffold_105361.1 2265 0.0
Ahg929072 jgi|Araly1|929072|scaffold_301529.1 1363 0.0
> Ahg924080 jgi|Araly1|924080|scaffold_105361.1
Length=1378
Score = 2265 bits (1226), Expect = 0.0
Identities = 1324/1373 (96%), Gaps = 0/1373 (0%)
Strand=Plus/Plus
Query 212 TTTATCAACTTAAGAATGTCTAATTATCAAGGggatgatgctgagtacatggaagatgtg 271
|||||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 6 TTTATCAACTGAACTATGTCTAATTACCAAGGGGACGATGCTGAGTACATGGAAGATGTG 65
Query 272 gatgatgaaatggatgaggatgatttagatgaggattttcgtggggatgatatggCTGCC 331
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 66 GATGATGAAATGGAAGAGGATGATTTGGATGAGGATTTTCGTGGGGATGATATGGCTGCC 125
Query 332 TCTGATTCCGATGTCGATGAGTTTGACTACTCTAATAATAAAATAGCTGACACTTCAGCT 391
|| ||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 126 TCGGATTCTGATGTCGATGAGTTTGACTACTCAAATAATAAAATAGCTGATACTTCAGCT 185
Query 392 GACCAAGCCCGGAAAGGGAAAGACATCCAGGGGATTCCTTGGGACAGGCTTAGTATTACG 451
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 186 GACCAAGCTCGCAAAGGGAAAGACATCCAGGGGATTCCTTGGGACAGGCTTAGTATTACG 245
Query 452 AGAGAGACATACAGACAAACTAGACTAGAACAGTATAAAAATTATGAAAATGTCCCTAAC 511
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 246 AGAGAGAAATACAGACAAACTAGACTAGAACAGTATAAAAATTATGAAAATGTCCCTAAT 305
Query 512 TCTGGGGAATCTTCAGGGAAAGATTGCATGGCCACACAGAAAGGGGCTCTTTTTTATGAT 571
||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 306 TCTGGTGAATCCTCAGGGAAAGATTGCATGGCCACACAGAAAGGGGCCCTTTTTTACGAT 365
Query 572 TTCTGGCGGAATACAAGATCTATCAAATCAAGTATTCTTCATTTCCAGTTGAGGAATTTG 631
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 366 TTCTGGCGGAATACAAGATCTATCAAATCAAGTATTCTTCATTTCCAGTTGAGGAATTTG 425
Query 632 GTTTGGGCAACTTCTAAGCACGATGTCTACCTTATGTCACAATATTTGGTGAGCCACTAT 691
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 GTTTGGGCAACTTCTAAGCACGATGTCTACCTTATGTCACAATATTTGGTGAGCCACTAT 485
Query 692 TCTACTTTGACATCCGGAAAGCATGATGTTCTCAATGTTCAAGGTCATGTTTCCCCATCT 751
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 486 TCTACTTTGACATCTGGAAAGCATGAAGTTCTCAATGTTCAAGGTCATGTTTCCCCAGCT 545
Query 752 GAGAAACATCCTGGAAGTTTGTTGGAGGGATTTACAAAGACTCAAGTGAGTACACTCGCA 811
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 546 GAGAAACATCCTGGAAGTTTGTTGGAGGGATTTACAAAGACTCAAGTGAGTACACTCGCA 605
Query 812 GTGAGAGATAAATTTTTAGTTGCCGGTGGATTTCAAGGAGAACTTATATGCAAGCATCTT 871
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 606 GTGAGAGATAAATTTTTAGTTGCCGGTGGATTTCAAGGAGAACTTATATGCAAGCATCTT 665
Query 872 GATAGACCTGGTGTGAGCTTTTGTTCACGTACTACTTATGATGATAATGCTATAACCAAT 931
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 666 GATAGACCTGGTGTGAGCTATTGTTCACGTACAACTTATGATGATAATGCTATAACCAAT 725
Query 932 GCTATTGAGATTTATAACAAACCCAGTGGGGCACTTCATTTTACTGCGTCGAATAATGAT 991
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 726 GCTATTGAGATTTATAACAAACCCAGTGGGGCACTTCATTTTACTGCCTCGAATAATGAT 785
Query 992 TGTGGAGTCAGAGATTTTGATATGGAGAGATACCAGCTTGTTAACCAGTTTCGCTTTCCA 1051
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 786 TGTGGAGTCAGAGATTTTGATATGGAGAGATACCAGCTTGTTAACCATTTTCGCTTTCCA 845
Query 1052 TGGCCGGTGAATCACACATCTTTAAGTCCTGATGGTAAATTGTTGACGATTGTGGGAGAC 1111
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 846 TGGCCGGTGAATCACACATCTTTAAGTCCTGATGGTAAATTATTGACGATTGTGGGAGAT 905
Query 1112 AACCCTGAAAGCCTTCTGGTAGACCCCAACACTGGAAAGACACTGGCAACGCTATCAGGA 1171
||||| ||| ||||||||||||| ||||||||||||||||| ||||||||| ||||||||
Sbjct 906 AACCCAGAAGGCCTTCTGGTAGAACCCAACACTGGAAAGACGCTGGCAACGTTATCAGGA 965
Query 1172 CATCTGGACTTTTCCTTTGCATCAGCATGGCACCCAGATGGATTCACGTTCTCCACAGGT 1231
||| ||||||||||||||||||| |||||||| |||||||| ||||| |||||||| |||
Sbjct 966 CATTTGGACTTTTCCTTTGCATCGGCATGGCATCCAGATGGGTTCACTTTCTCCACTGGT 1025
Query 1232 AACCAGGACAAGACCTGCCGGGTTTGGGACATTCGTAACCTGTCAAAATCTGTTGCTGTC 1291
||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1026 AACCAGGACAAAACCTGCCGGGTTTGGGACATTCGTAACCTTTCTAAATCTGTTGCTGTC 1085
Query 1292 TTGAGGGGTAACCTTGGAGCAATCCGATCCATTCGCTACACATCTGATGGGAAGTACATG 1351
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1086 TTGAGGGGTAACCTTGGAGCAATCCGATCCATCCGCTACACATCTGATGGGAAATACATG 1145
Query 1352 GCCATGGCTGAGCCGGCTGACTTTGTCCATGTGTATGATGTCTCAAACGGGTATGAAACG 1411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 GCCATGGCTGAGCCGGCTGACTTTGTCCATGTGTATGATGTCTCAAACGGGTATGAAACG 1205
Query 1412 GAGCAAGAGATCGACTTCTTTGGGGAGATCTCGGGAATATCATTTAGCCCCGACACAGAA 1471
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1206 GAGCAAGAGATCGACTTCTTTGGGGAGATCTCGGGAATATCATTTAGCCCCGACACAGAA 1265
Query 1472 GCACTCTTCATAGGCGTTTGGGACCGCACTTACGGAAGTCTAATTGAGTATAGCCGGCGC 1531
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1266 GCACTCTTCATCGGCGTTTGGGACCGCACTTACGGAAGTCTAATTGAGTATGGCCGGCGC 1325
Query 1532 CACAACTACTCCTACCTTGATTCATTTCTATGATCACCCGACATACCAGAGGA 1584
||||||||||||||||||||||||||||||| ||||||||| ||| |||||||
Sbjct 1326 CACAACTACTCCTACCTTGATTCATTTCTATAATCACCCGAGATATCAGAGGA 1378
> Ahg929072 jgi|Araly1|929072|scaffold_301529.1
Length=1384
Score = 1363 bits (738), Expect = 0.0
Identities = 1148/1346 (85%), Gaps = 28/1346 (2%)
Strand=Plus/Plus
Query 223 AAGAATGTCTAATTATCAAGGggatgatgctgagtacatggaagatgtggatgatgaaat 282
||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||| ||
Sbjct 17 AAGAATGTCCAATTATCAAGGAGATGATGCTGAGTACATGGAAGACGTAGATGATGAGAT 76
Query 283 -g--ga---tgaggatgatttagatgaggattttcgtggggatgat-atggCTGCCTCTG 335
| || ||| |||||| | ||||| || |||||||| |||||| ||| ||| ||||
Sbjct 77 GGAAGATGTTGAAGATGATATGGATGACGAGTTTCGTGGCGATGATCTTGG-TGCTTCTG 135
Query 336 ATTCCGATGTCGATGAGTTTGACTACTCTAATAATAAAATAGCTGACACTTCAGCTGACC 395
|||| || || || || ||||||||||| ||||||||| ||||||| || || ||||| |
Sbjct 136 ATTCTGACGTTGAGGAATTTGACTACTCGAATAATAAAGTAGCTGATACCTCGGCTGAGC 195
Query 396 AAGCCCGGAAAGGGAAAGACATCCAGGGGATTCCTTGGGACAGGCTTAGTATTACGAGAG 455
|||| |||||||||||||| |||||||||||||| |||||||| ||||||||| | ||||
Sbjct 196 AAGCTCGGAAAGGGAAAGATATCCAGGGGATTCCGTGGGACAGACTTAGTATTTCTAGAG 255
Query 456 AGACATACAGACAAACTAGACTAGAACAGTATAAAAATTATGAAAATGTCCCTAACTCTG 515
||| |||||||||||||||| ||||||||||||| |||||||||||||||||||| ||||
Sbjct 256 AGAAATACAGACAAACTAGATTAGAACAGTATAAGAATTATGAAAATGTCCCTAATTCTG 315
Query 516 GGGAATCTTCAGGGAAA-GATTGCATGGCCACACAGAAAGGGGCTCTTTTTTATGATTTC 574
||||||| ||| | ||| | ||||| || |||||||||||||| || ||||||||||||
Sbjct 316 GGGAATCCTCA-GAAAAGGTTTGCAAGGTCACACAGAAAGGGGGACTATTTTATGATTTC 374
Query 575 TGGCGGAATACAAGATCTATCAAATCAAGTATTCTTCATTTCCAGTTGAGGAATTTGGTT 634
||||||||| || ||||||| || || | ||| || ||||||||| |||||||||||||
Sbjct 375 TGGCGGAATTCACGATCTATTAAGTCTACTATACTACATTTCCAGCTGAGGAATTTGGTG 434
Query 635 TGGGCAACTTCTAAGCACGATGTCTACCTTATGTCACAATATT--TGGTGAGC-CACTAT 691
||||||||||||||||| || || || ||||||||| || || |||| | | || |||
Sbjct 435 TGGGCAACTTCTAAGCATGACGTGTATCTTATGTCA-AA-CTTCCTGGTTA-CACATTAT 491
Query 692 TCTACTTTGACATCCGGAAAGCATGATGTTCTCAATGTTCAAGGTCATGTTTCCCCATCT 751
||| || | || |||||||||||||| ||||||||||||| ||||||||| | |||||
Sbjct 492 TCTTCTCTAACTTCCGGAAAGCATGAAGTTCTCAATGTTCGTGGTCATGTTGCACCATCC 551
Query 752 GAGAAACATCCTGGAAGTTT-GTTGGAGGGATTTAC-AAAGACTCAAGTGAGTACACTCG 809
|||||||||||||||||||| || || |||||||| || |||||||| |||||||| |
Sbjct 552 GAGAAACATCCTGGAAGTTTACTT-GAAGGATTTACGCAA-ACTCAAGTAAGTACACTTG 609
Query 810 CAGTGAGAGATAAATTTTTAGTTGCCGGTGGATTTCAAGGAGAACTTATATGCAAGCATC 869
|||| | ||| | ||| ||||||| || || ||||||||||||||||| ||||||||||
Sbjct 610 CAGTAAAAGACGACTTTCTAGTTGCTGGCGGGTTTCAAGGAGAACTTATTTGCAAGCATC 669
Query 870 TTGATAGACCTGGTGTGAGCTTTTGTTCACGTACTACTTATGATGATAATGCTATAACCA 929
|||||||||| ||||| |||||||| || ||||| |||||||||||||||||||||||||
Sbjct 670 TTGATAGACCAGGTGTCAGCTTTTGCTCTCGTACGACTTATGATGATAATGCTATAACCA 729
Query 930 ATGCTATTGAGATTTATAACAAACCCAGTGGGGCACTTCATTTTACTGCGTCGAATAATG 989
||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||
Sbjct 730 ATGCTATTGAGATCTACAACAAACCCAGTGGTGCACTTCATTTTACTGCCTCGAATAATG 789
Query 990 ATTGTGGAGTCAGAGATTTTGATATGGAGAGATACCAGCTTGTTAACCAGTTT-CGCTTT 1048
| |||||||| ||||| ||||| ||||||||||||||||||||||| || ||| || |||
Sbjct 790 ACTGTGGAGTTAGAGACTTTGACATGGAGAGATACCAGCTTGTTAAGCA-TTTCCGTTTT 848
Query 1049 CCATGGCCGGTGAATCACACATCTTTAAGTCCTGATGGTAAATTGTTGACGATTGTGGGA 1108
|| ||||| ||||||||| | ||||| ||||||||||||||||| || | ||||| |||
Sbjct 849 CCTTGGCCAGTGAATCACGCTTCTTTGAGTCCTGATGGTAAATTACTGGCTATTGTTGGA 908
Query 1109 GACAACCCTGAAAGCCTTCTGGTAGACCCCAACACTGGAAAGACACTGGCAACGCTATCA 1168
|||||||| || ||||| | |||||||||||||| |||||||| ||| ||| ||||||
Sbjct 909 GACAACCCGGAGGGCCTTATAGTAGACCCCAACACAGGAAAGACGTTGGAAACTCTATCA 968
Query 1169 GGACATC-TGGACTTTTCCTTTGCATCAGCATGGCACCCAGATGGATTCACGTTCTCCAC 1227
||||| | |||||||||||||||| || || ||||| || |||||| |||| ||||| ||
Sbjct 969 GGACA-CTTGGACTTTTCCTTTGCCTCTGCGTGGCATCCGGATGGAGTCACTTTCTCAAC 1027
Query 1228 AGGTAACCAGGACAAGACCTGCCGGGTTTGGGACATTCGTAACCTGTCAAAATCTGTTGC 1287
||| |||||||||||||| ||||| || |||||||| || ||||| || || || |||||
Sbjct 1028 AGGAAACCAGGACAAGACTTGCCGTGTATGGGACATCCGAAACCTATCTAAGTCCGTTGC 1087
Query 1288 TGTCTTGAGGGGTAACCTTGGAGCAATCCGATCCATTCGCTACACATCTGATGGGAAGTA 1347
|||||||| ||||||||| ||||||||||| || || ||||||||||| ||||| || ||
Sbjct 1088 TGTCTTGAAGGGTAACCTAGGAGCAATCCGGTCAATCCGCTACACATCAGATGGAAAATA 1147
Query 1348 CATGGCCATGGCTGAGCCGGCTGACTTTGTCCATGTGTATGATGTCTCAAACGGGTATGA 1407
||||||||||||||| || ||||||||||||||||| |||||||||||||||||||||||
Sbjct 1148 CATGGCCATGGCTGAACCAGCTGACTTTGTCCATGTCTATGATGTCTCAAACGGGTATGA 1207
Query 1408 AACGGAGCAAGAGATCGACTTCTTTGGGGAGATCTCGGGAATATCATTT-AGCCCCGACA 1466
||| ||||| || ||||||||||||||||||||||| |||||||| ||| ||||| ||||
Sbjct 1208 AACAGAGCAGGAAATCGACTTCTTTGGGGAGATCTCAGGAATATC-TTTCAGCCCTGACA 1266
Query 1467 CAGAAGCACTCTTCATAGGCGTTTGGGACCGCACTTACGGAAGTCTAATTGAGTATAGCC 1526
|||| || || || || || || |||||||||||||| || || || |||||| | | |
Sbjct 1267 CAGAGGCGCTGTTTATTGGGGTATGGGACCGCACTTATGGTAGCCTCCTTGAGTTTGGTC 1326
Query 1527 GGCGCCAC-AACTACTCCTACCTTGA 1551
||||| | ||||| |||||||||||
Sbjct 1327 GGCGC-AGGAACTATTCCTACCTTGA 1351
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73666533830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5